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The map label for this gene is yibD [C]

Identifier: 220905433

GI number: 220905433

Start: 2617677

End: 2618651

Strand: Reverse

Name: yibD [C]

Synonym: Ddes_2171

Alternate gene names: 220905433

Gene position: 2618651-2617677 (Counterclockwise)

Preceding gene: 220905434

Following gene: 220905432

Centisome position: 91.13

GC content: 58.87

Gene sequence:

>975_bases
ATGAGCGCTCCCGTTGTTTCCGTTATCATGAACTGTCTGAACAGTTCGCGCGACCTGCGCGAAGCTATGGACAGCGTCAT
GGCCCAGACATTTACGGACTTCGAGATAGTGTTCTGGGACAACGGTTCCACAGACGAAAGCCCGGCCATCGCCCGGAGTT
ACGGCGAAAAAGTACGCTATTTCAGGGGGGAAACCACGGTTCCCCTGGGAGCGGCGCGCAATCTGGCTCTGGCGCAGGCC
AGGGGCCGGTACATCGCTTTTCTGGATTGTGATGACCTCTGGCGCCCGCGCAAGCTGGAGCTTCAGACAGCCCTGCTTGA
AGCCGATGACCGCGTGGGGCTGGTCAGCACCGATACGGAGATTTTTGACGGCAGGCGTGTGCTCAAGCGTGTTTTTGGCG
AAGCGCGGCCCGAGCGGGGGATGGTTTTTGCAGCCTTGATGGAACGGCAGTGGATATCCATGTCCTCCGCTGTGGTCAGG
GCGGAGGCCCTTGCCGGGCTTTCTGCGGAAGGGACGGCTACAGGGCTGGGCAGCAATGGCGGCTGGTTTGACGAGAGCCT
CAATGTCTGCGAAGAGGCCGATGTTTTTTATCGCATCGCCCACGACTGGAGGCTGGACCATGTGGACGAGGCCCTTACTG
TCTGGCGCGTACACGGAACCAATACGACGTTCCGCAAGTTCGGGCAGTTCGCTGACGAAACCCTGCGCATACTGGAAAAG
CACCGCAGGCTTTACCCGGGCTATGACCGGGAACACGCAGATCTTGTGCTGCTGCTTACACGGCGGGCCGCTTTCCAGAA
AGGGGTGGCCTTGTGGCGTGAAGGAAAAAATGCCGAAGCCCGCAAGGCCGTGGCTCCGTGGAAAAACAGCGGTAGAAAAT
ATAAAGTATTCTGGTTTGCCAGCTATCTGCCGGGTTCGTTCTTTGATCTTGCCGCGCGCCTGTATTTTGCGCTGCCTGGG
GCTTTTCGCCGCTAG

Upstream 100 bases:

>100_bases
GTAAATACTGGGTGTTCCGGCAGCGGCCCCCCATGGCAGCATCCGTGTCGTCGCGCGGGCCGACGCCGCCCGCTCAGCTC
CCAAACAGTGAGGAAAAGCC

Downstream 100 bases:

>100_bases
AGGCAACATTTTTTACTTATACATCTCCCAACTTTCAAAAAAGCATTGTTTTTTACTCGGGAAACAGTTATCCGTCCAAG
AGCTATTCTTGGGGACAGTC

Product: family 2 glycosyl transferase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 324; Mature: 323

Protein sequence:

>324_residues
MSAPVVSVIMNCLNSSRDLREAMDSVMAQTFTDFEIVFWDNGSTDESPAIARSYGEKVRYFRGETTVPLGAARNLALAQA
RGRYIAFLDCDDLWRPRKLELQTALLEADDRVGLVSTDTEIFDGRRVLKRVFGEARPERGMVFAALMERQWISMSSAVVR
AEALAGLSAEGTATGLGSNGGWFDESLNVCEEADVFYRIAHDWRLDHVDEALTVWRVHGTNTTFRKFGQFADETLRILEK
HRRLYPGYDREHADLVLLLTRRAAFQKGVALWREGKNAEARKAVAPWKNSGRKYKVFWFASYLPGSFFDLAARLYFALPG
AFRR

Sequences:

>Translated_324_residues
MSAPVVSVIMNCLNSSRDLREAMDSVMAQTFTDFEIVFWDNGSTDESPAIARSYGEKVRYFRGETTVPLGAARNLALAQA
RGRYIAFLDCDDLWRPRKLELQTALLEADDRVGLVSTDTEIFDGRRVLKRVFGEARPERGMVFAALMERQWISMSSAVVR
AEALAGLSAEGTATGLGSNGGWFDESLNVCEEADVFYRIAHDWRLDHVDEALTVWRVHGTNTTFRKFGQFADETLRILEK
HRRLYPGYDREHADLVLLLTRRAAFQKGVALWREGKNAEARKAVAPWKNSGRKYKVFWFASYLPGSFFDLAARLYFALPG
AFRR
>Mature_323_residues
SAPVVSVIMNCLNSSRDLREAMDSVMAQTFTDFEIVFWDNGSTDESPAIARSYGEKVRYFRGETTVPLGAARNLALAQAR
GRYIAFLDCDDLWRPRKLELQTALLEADDRVGLVSTDTEIFDGRRVLKRVFGEARPERGMVFAALMERQWISMSSAVVRA
EALAGLSAEGTATGLGSNGGWFDESLNVCEEADVFYRIAHDWRLDHVDEALTVWRVHGTNTTFRKFGQFADETLRILEKH
RRLYPGYDREHADLVLLLTRRAAFQKGVALWREGKNAEARKAVAPWKNSGRKYKVFWFASYLPGSFFDLAARLYFALPGA
FRR

Specific function: Unknown

COG id: COG0463

COG function: function code M; Glycosyltransferases involved in cell wall biogenesis

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyltransferase 2 family [H]

Homologues:

Organism=Escherichia coli, GI1790044, Length=120, Percent_Identity=38.3333333333333, Blast_Score=72, Evalue=7e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001173 [H]

Pfam domain/function: PF00535 Glycos_transf_2 [H]

EC number: 2.-.-.- [C]

Molecular weight: Translated: 36743; Mature: 36612

Theoretical pI: Translated: 8.44; Mature: 8.44

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSAPVVSVIMNCLNSSRDLREAMDSVMAQTFTDFEIVFWDNGSTDESPAIARSYGEKVRY
CCCHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCHHHHHHHHHHHH
FRGETTVPLGAARNLALAQARGRYIAFLDCDDLWRPRKLELQTALLEADDRVGLVSTDTE
CCCCCCCCCCCCCCHHHHHCCCCEEEEECCHHCCCCCHHHHHHHHHCCCCCEEEEECCCH
IFDGRRVLKRVFGEARPERGMVFAALMERQWISMSSAVVRAEALAGLSAEGTATGLGSNG
HHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
GWFDESLNVCEEADVFYRIAHDWRLDHVDEALTVWRVHGTNTTFRKFGQFADETLRILEK
CCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHEEEEEEECCCHHHHHHHHHHHHHHHHHHH
HRRLYPGYDREHADLVLLLTRRAAFQKGVALWREGKNAEARKAVAPWKNSGRKYKVFWFA
HHHCCCCCCCCCCCEEEEHHHHHHHHHHHHHHHCCCCCCHHHHCCCHHCCCCEEEEEEEE
SYLPGSFFDLAARLYFALPGAFRR
CCCCCHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure 
SAPVVSVIMNCLNSSRDLREAMDSVMAQTFTDFEIVFWDNGSTDESPAIARSYGEKVRY
CCHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCHHHHHHHHHHHH
FRGETTVPLGAARNLALAQARGRYIAFLDCDDLWRPRKLELQTALLEADDRVGLVSTDTE
CCCCCCCCCCCCCCHHHHHCCCCEEEEECCHHCCCCCHHHHHHHHHCCCCCEEEEECCCH
IFDGRRVLKRVFGEARPERGMVFAALMERQWISMSSAVVRAEALAGLSAEGTATGLGSNG
HHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
GWFDESLNVCEEADVFYRIAHDWRLDHVDEALTVWRVHGTNTTFRKFGQFADETLRILEK
CCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHEEEEEEECCCHHHHHHHHHHHHHHHHHHH
HRRLYPGYDREHADLVLLLTRRAAFQKGVALWREGKNAEARKAVAPWKNSGRKYKVFWFA
HHHCCCCCCCCCCCEEEEHHHHHHHHHHHHHHHCCCCCCHHHHCCCHHCCCCEEEEEEEE
SYLPGSFFDLAARLYFALPGAFRR
CCCCCHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA