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The map label for this gene is mdcF [H]

Identifier: 220905339

GI number: 220905339

Start: 2499675

End: 2500658

Strand: Reverse

Name: mdcF [H]

Synonym: Ddes_2077

Alternate gene names: 220905339

Gene position: 2500658-2499675 (Counterclockwise)

Preceding gene: 220905340

Following gene: 220905335

Centisome position: 87.03

GC content: 61.38

Gene sequence:

>984_bases
ATGTTTCATGCTTTTTTTGCTGTTTTTCCGGTGTTTTGCATTATCGCCCTCGGAGTGCTGCTCAGGGCGCGTGATGTATT
GCCCGAAAACGCCGGGCCGGTACTCGGCGTGTATGTGCTCAAGCTGGCCCTGCCCCTGCTCATTTTTCACCTGCTGGCCG
GAGCGAGTCCGGAGGACCTGGCCAGAGGTGGCTTCTGGCTGGCCGTTATCGGCTCTCAGGTTATTGTCTACATGCTCGGC
TATGTGGGCGACAGGCTGTTTTGCCGTCGTGGGGCCGGTCCGGCGGTAATCAGCGGGCTTTCCTGCTCGGCCTGCAACGC
GGCCTTTGTGGGGCTGCCCATTGTGTCAAACCTCTGGCCGGGCAACAGCGAGGCCATGCTGGTTGCGGGTCTGGCTATCC
TCACGCCCAATGTGGTCATGATCATGGCGCAGACCCGGCTGGACATCCTGTCCGGCTCTCTGGCCTGGAAGGGCGGTAAT
CCGCTGGTTTTTGCGGGCAGCGTGGCGCGTATCTTCATTCTGGGTAATCCCATCCTGCTGGCTACACTGGCCGGGGGGGC
GCTTTCCCTGACCGGGCTTGGCCTGTGGGAGCCGCTGGACCGTGCCATCAGCCTTGTGGGCTACACCGCCGCCCCCTGCA
TGCTGCTGGCGCTCGGGCTGGATCTGCAGCAAAAACTGGCCGTGGCCACACGCCGCGCCCAGGGGGGAGTGCTGCTGCGC
CAGATATGGTTTTCTCTGTGCAAGCTTGTGCTGCACCCCCTGCTGTGCTGGGGGATTATGTACGCGCTCGGCATTACGGG
CCTGTGGCTGACCATTGGTGTGCTTATCAGCGCTACAGCTACAGCCCTGCTGGTCAGCGTGCTGGCCCAGGTTTACAACG
CTGTGCCGGAAGAAGCCGCCCTGACTGCTGTGGTCAATAACGGCCTGAGCATACTGACCCTCACTGGTTTTGTCTGGCTG
TTTCAGACCTTGGGCATGGTTTAG

Upstream 100 bases:

>100_bases
TGTGCGTGCTGGACAGCAGCGGCCCGCAGGGTCATGATGCGGCCGCGCGACAGTGTGCGGCCGTTTGTGTTTTTCACCTT
TTCCGTTCTTGAGAATTGCC

Downstream 100 bases:

>100_bases
AGCAATTTGTCTGCGCGGTTAAGTGCCATAACGAGCGTGTTTTCAATGCCGGGAATACATATTCTCAAAGCTGCAATGCG
TTAGCAGGCGCACGTGCAAA

Product: auxin efflux carrier

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 327; Mature: 327

Protein sequence:

>327_residues
MFHAFFAVFPVFCIIALGVLLRARDVLPENAGPVLGVYVLKLALPLLIFHLLAGASPEDLARGGFWLAVIGSQVIVYMLG
YVGDRLFCRRGAGPAVISGLSCSACNAAFVGLPIVSNLWPGNSEAMLVAGLAILTPNVVMIMAQTRLDILSGSLAWKGGN
PLVFAGSVARIFILGNPILLATLAGGALSLTGLGLWEPLDRAISLVGYTAAPCMLLALGLDLQQKLAVATRRAQGGVLLR
QIWFSLCKLVLHPLLCWGIMYALGITGLWLTIGVLISATATALLVSVLAQVYNAVPEEAALTAVVNNGLSILTLTGFVWL
FQTLGMV

Sequences:

>Translated_327_residues
MFHAFFAVFPVFCIIALGVLLRARDVLPENAGPVLGVYVLKLALPLLIFHLLAGASPEDLARGGFWLAVIGSQVIVYMLG
YVGDRLFCRRGAGPAVISGLSCSACNAAFVGLPIVSNLWPGNSEAMLVAGLAILTPNVVMIMAQTRLDILSGSLAWKGGN
PLVFAGSVARIFILGNPILLATLAGGALSLTGLGLWEPLDRAISLVGYTAAPCMLLALGLDLQQKLAVATRRAQGGVLLR
QIWFSLCKLVLHPLLCWGIMYALGITGLWLTIGVLISATATALLVSVLAQVYNAVPEEAALTAVVNNGLSILTLTGFVWL
FQTLGMV
>Mature_327_residues
MFHAFFAVFPVFCIIALGVLLRARDVLPENAGPVLGVYVLKLALPLLIFHLLAGASPEDLARGGFWLAVIGSQVIVYMLG
YVGDRLFCRRGAGPAVISGLSCSACNAAFVGLPIVSNLWPGNSEAMLVAGLAILTPNVVMIMAQTRLDILSGSLAWKGGN
PLVFAGSVARIFILGNPILLATLAGGALSLTGLGLWEPLDRAISLVGYTAAPCMLLALGLDLQQKLAVATRRAQGGVLLR
QIWFSLCKLVLHPLLCWGIMYALGITGLWLTIGVLISATATALLVSVLAQVYNAVPEEAALTAVVNNGLSILTLTGFVWL
FQTLGMV

Specific function: Unknown

COG id: COG0679

COG function: function code R; Predicted permeases

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the auxin efflux carrier (TC 2.A.69) family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004776 [H]

Pfam domain/function: PF03547 Mem_trans [H]

EC number: NA

Molecular weight: Translated: 34377; Mature: 34377

Theoretical pI: Translated: 8.49; Mature: 8.49

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFHAFFAVFPVFCIIALGVLLRARDVLPENAGPVLGVYVLKLALPLLIFHLLAGASPEDL
CHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHH
ARGGFWLAVIGSQVIVYMLGYVGDRLFCRRGAGPAVISGLSCSACNAAFVGLPIVSNLWP
HCCCCHHHHHHHHHHHHHHHHHCCHHHHHCCCCHHHCCCCCCCCCCHHHHHHHHHHHCCC
GNSEAMLVAGLAILTPNVVMIMAQTRLDILSGSLAWKGGNPLVFAGSVARIFILGNPILL
CCCCHHHHHHHHHHCCCCEEEEHHHHHHHHCCCCEECCCCCEEEECCEEEEEEECCHHHE
ATLAGGALSLTGLGLWEPLDRAISLVGYTAAPCMLLALGLDLQQKLAVATRRAQGGVLLR
EECCCCCCEECCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCHHHH
QIWFSLCKLVLHPLLCWGIMYALGITGLWLTIGVLISATATALLVSVLAQVYNAVPEEAA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHH
LTAVVNNGLSILTLTGFVWLFQTLGMV
HHHHHHCCCHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MFHAFFAVFPVFCIIALGVLLRARDVLPENAGPVLGVYVLKLALPLLIFHLLAGASPEDL
CHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHH
ARGGFWLAVIGSQVIVYMLGYVGDRLFCRRGAGPAVISGLSCSACNAAFVGLPIVSNLWP
HCCCCHHHHHHHHHHHHHHHHHCCHHHHHCCCCHHHCCCCCCCCCCHHHHHHHHHHHCCC
GNSEAMLVAGLAILTPNVVMIMAQTRLDILSGSLAWKGGNPLVFAGSVARIFILGNPILL
CCCCHHHHHHHHHHCCCCEEEEHHHHHHHHCCCCEECCCCCEEEECCEEEEEEECCHHHE
ATLAGGALSLTGLGLWEPLDRAISLVGYTAAPCMLLALGLDLQQKLAVATRRAQGGVLLR
EECCCCCCEECCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCHHHH
QIWFSLCKLVLHPLLCWGIMYALGITGLWLTIGVLISATATALLVSVLAQVYNAVPEEAA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHH
LTAVVNNGLSILTLTGFVWLFQTLGMV
HHHHHHCCCHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 10858449; 11481430 [H]