Click here to switch to the map view.

The map label for this gene is rbpE [H]

Identifier: 220905282

GI number: 220905282

Start: 2432885

End: 2433151

Strand: Reverse

Name: rbpE [H]

Synonym: Ddes_2020

Alternate gene names: 220905282

Gene position: 2433151-2432885 (Counterclockwise)

Preceding gene: 220905283

Following gene: 220905281

Centisome position: 84.68

GC content: 56.93

Gene sequence:

>267_bases
ATGTCCAAGTCCATCTATGTCGGGAACCTTCCCTGGTCTGCTACGGAAGAACAGGTTCAGGATCTTTTTGCCGAATACGG
CAACGTTCTGTCTGTGAAACTTGTCAGCGACAGGGATACCGGCCGTGCCCGCGGCTTCGGCTTTGTGGAAATGGAAGACG
GCGAAGCCGACTCCGCCATTGAAGCTCTTGACAACTTCAGCTTCGGCGGTCGCACGCTTCGCGTCAACGAAGCCAAACCC
AGGGCTCCTCGTCAGCCCCGCTACTAG

Upstream 100 bases:

>100_bases
TCGTCAAAGCGTGTTTCTGTGATTTGCATGGGCCGCGTACCGGTAATACGTTTTATCGGGTGTAAGCGCGGGAAGATTGT
TTTTTTTGAGAGGGTGTTTC

Downstream 100 bases:

>100_bases
GGTTCAGCAGCAACATAACGCCCCTCGCTTTTTGGGGCGTTTTTTGTTCGTTGCGTTTTTAACCCCGCACAGGCACTGCG
CCTTGTGGCGTAAAAACGGC

Product: RNP-1 like RNA-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 88; Mature: 87

Protein sequence:

>88_residues
MSKSIYVGNLPWSATEEQVQDLFAEYGNVLSVKLVSDRDTGRARGFGFVEMEDGEADSAIEALDNFSFGGRTLRVNEAKP
RAPRQPRY

Sequences:

>Translated_88_residues
MSKSIYVGNLPWSATEEQVQDLFAEYGNVLSVKLVSDRDTGRARGFGFVEMEDGEADSAIEALDNFSFGGRTLRVNEAKP
RAPRQPRY
>Mature_87_residues
SKSIYVGNLPWSATEEQVQDLFAEYGNVLSVKLVSDRDTGRARGFGFVEMEDGEADSAIEALDNFSFGGRTLRVNEAKPR
APRQPRY

Specific function: Unknown

COG id: COG0724

COG function: function code R; RNA-binding proteins (RRM domain)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 RRM (RNA recognition motif) domain [H]

Homologues:

Organism=Homo sapiens, GI14149675, Length=77, Percent_Identity=50.6493506493506, Blast_Score=85, Evalue=1e-17,
Organism=Homo sapiens, GI4557493, Length=77, Percent_Identity=50.6493506493506, Blast_Score=84, Evalue=2e-17,
Organism=Homo sapiens, GI4757926, Length=79, Percent_Identity=35.4430379746835, Blast_Score=64, Evalue=2e-11,
Organism=Homo sapiens, GI35493811, Length=79, Percent_Identity=35.4430379746835, Blast_Score=64, Evalue=2e-11,
Organism=Homo sapiens, GI116734696, Length=78, Percent_Identity=37.1794871794872, Blast_Score=64, Evalue=2e-11,
Organism=Homo sapiens, GI116734694, Length=78, Percent_Identity=37.1794871794872, Blast_Score=64, Evalue=2e-11,
Organism=Homo sapiens, GI116734698, Length=78, Percent_Identity=37.1794871794872, Blast_Score=64, Evalue=3e-11,
Organism=Caenorhabditis elegans, GI17508567, Length=77, Percent_Identity=50.6493506493506, Blast_Score=80, Evalue=2e-16,
Organism=Caenorhabditis elegans, GI17553656, Length=77, Percent_Identity=41.5584415584416, Blast_Score=77, Evalue=2e-15,
Organism=Caenorhabditis elegans, GI17508585, Length=77, Percent_Identity=46.7532467532467, Blast_Score=77, Evalue=2e-15,
Organism=Caenorhabditis elegans, GI17508587, Length=79, Percent_Identity=46.8354430379747, Blast_Score=76, Evalue=3e-15,
Organism=Saccharomyces cerevisiae, GI6321394, Length=75, Percent_Identity=37.3333333333333, Blast_Score=65, Evalue=2e-12,
Organism=Drosophila melanogaster, GI17137710, Length=77, Percent_Identity=51.9480519480519, Blast_Score=89, Evalue=5e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012677
- InterPro:   IPR000504
- InterPro:   IPR015465 [H]

Pfam domain/function: PF00076 RRM_1 [H]

EC number: NA

Molecular weight: Translated: 9816; Mature: 9685

Theoretical pI: Translated: 4.60; Mature: 4.60

Prosite motif: PS50102 RRM

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKSIYVGNLPWSATEEQVQDLFAEYGNVLSVKLVSDRDTGRARGFGFVEMEDGEADSAI
CCCCEEECCCCCCCCHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCEEEECCCCCHHHH
EALDNFSFGGRTLRVNEAKPRAPRQPRY
HHHHCCCCCCEEEEECCCCCCCCCCCCC
>Mature Secondary Structure 
SKSIYVGNLPWSATEEQVQDLFAEYGNVLSVKLVSDRDTGRARGFGFVEMEDGEADSAI
CCCEEECCCCCCCCHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCEEEECCCCCHHHH
EALDNFSFGGRTLRVNEAKPRAPRQPRY
HHHHCCCCCCEEEEECCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11759840 [H]