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The map label for this gene is csrA

Identifier: 220905261

GI number: 220905261

Start: 2410789

End: 2411025

Strand: Reverse

Name: csrA

Synonym: Ddes_1999

Alternate gene names: 220905261

Gene position: 2411025-2410789 (Counterclockwise)

Preceding gene: 220905262

Following gene: 220905260

Centisome position: 83.91

GC content: 52.32

Gene sequence:

>237_bases
ATGCTTATACTGACGCGCCGCCCGGGTGAAAGCCTGTATCTCGGCGAAAACATACGCATAACCGTTCTGGGTATGCAGGG
CAAACAGGTCAAGCTTGGCCTTGAAGTGCCGGGCGACACAACCGTTTACCGCGAGGAAGTGTATAAACGGGTTGTGGAGG
AAAACCGCCGCGCCCTTGAAACCAGTAACAACGACCTTATGGTGGCTGCTGAATTATGGCACGAAACAAAGAAATAG

Upstream 100 bases:

>100_bases
AAAGCTTACGCGGCAGCAGCTGACGTACCAGACGGTGCTTCAGTCTTCTTCTATGATCATGCAGATGAGTCTTGCCAAGT
ACATATAACAGGTAGCATCT

Downstream 100 bases:

>100_bases
AAATCGATACCCGCCTTGGCCGCCGGAGTGTCGATGCCGACAAGGTTGTACACTTTCCGCGCGGGCTGGCCGGTTTTGAA
AATGAACGGGATTTCATTCT

Product: carbon storage regulator CsrA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 78; Mature: 78

Protein sequence:

>78_residues
MLILTRRPGESLYLGENIRITVLGMQGKQVKLGLEVPGDTTVYREEVYKRVVEENRRALETSNNDLMVAAELWHETKK

Sequences:

>Translated_78_residues
MLILTRRPGESLYLGENIRITVLGMQGKQVKLGLEVPGDTTVYREEVYKRVVEENRRALETSNNDLMVAAELWHETKK
>Mature_78_residues
MLILTRRPGESLYLGENIRITVLGMQGKQVKLGLEVPGDTTVYREEVYKRVVEENRRALETSNNDLMVAAELWHETKK

Specific function: Could accelerate the degradation of some genes transcripts potentially through selective RNA binding

COG id: COG1551

COG function: function code T; Carbon storage regulator (could also regulate swarming and quorum sensing)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CsrA family

Homologues:

Organism=Escherichia coli, GI1789047, Length=54, Percent_Identity=50, Blast_Score=64, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): CSRA_DESDA (B8J2X6)

Other databases:

- EMBL:   CP001358
- RefSeq:   YP_002480573.1
- GeneID:   7285715
- GenomeReviews:   CP001358_GR
- KEGG:   dds:Ddes_1999
- HOGENOM:   HBG724655
- ProtClustDB:   CLSK704676
- HAMAP:   MF_00167
- InterPro:   IPR003751
- ProDom:   PD009007
- TIGRFAMs:   TIGR00202

Pfam domain/function: PF02599 CsrA

EC number: NA

Molecular weight: Translated: 8988; Mature: 8988

Theoretical pI: Translated: 7.53; Mature: 7.53

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLILTRRPGESLYLGENIRITVLGMQGKQVKLGLEVPGDTTVYREEVYKRVVEENRRALE
CEEEECCCCCCEEECCCCEEEEEECCCCEEEEEEECCCCCCHHHHHHHHHHHHHCHHEEC
TSNNDLMVAAELWHETKK
CCCCCEEEEEEHHCCCCC
>Mature Secondary Structure
MLILTRRPGESLYLGENIRITVLGMQGKQVKLGLEVPGDTTVYREEVYKRVVEENRRALE
CEEEECCCCCCEEECCCCEEEEEECCCCEEEEEEECCCCCCHHHHHHHHHHHHHCHHEEC
TSNNDLMVAAELWHETKK
CCCCCEEEEEEHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA