Click here to switch to the map view.

The map label for this gene is ybeQ [H]

Identifier: 220904871

GI number: 220904871

Start: 1932364

End: 1933032

Strand: Reverse

Name: ybeQ [H]

Synonym: Ddes_1606

Alternate gene names: 220904871

Gene position: 1933032-1932364 (Counterclockwise)

Preceding gene: 220904903

Following gene: 220904860

Centisome position: 67.27

GC content: 56.35

Gene sequence:

>669_bases
ATGAAAAAATATTATGGGGTGATCGTTCTGGCTCTGGCGCTTTTTCTGTTCCAGGGCATGACTGTAAGCGCTCAGCCGAC
GGATCAGGTAGAGCAAAAACTCAACGAAGCGTGGGTGGCCTACAATATCGGGCAGTACAAAAAGGTGTTGCAACTGGTGC
AGCCTCTTGCCTCTGACGGCAACGCCCGTGCCCAGATCATCCTTGGCCGTTGCTATGAAAACGGGCTTGGTGTGCCGCAG
GATATGGAAACCGCCGCCAAGTGGTTCCGTCTTGCCGCCGAGCAGAACAACAGCGAGGCCCAGGTGCTGCTGGCGTACCA
GTATGAACTGGGCCAGGGCGTGCCCAAAGACGATGCCGCCGTAGTCAGGCTTATGACCAGCGCCGCCAATGCGGGCAATG
CCGAAGCCCTGTTCAATCTGGCGCTGTACCACGGGCAAGGCAAGTACGGCTTTGCCAAAAATCCCGCCGAAAGCTTCCGT
CTGGCAAAAATGGCGGCAGATCAGGGCAATGCCCAGGCACAGCGCTATGTGGGTGCTTGCTATGAATACGGCGTGGGTGT
GCCGGAAAACGCCACCGAAGCGCAGGTGTGGTATGGCAAGGCCAAAGCGCAAGGCCTGGAAATAGAAGGCAATGTCTTTA
ATTTTGTGCGCGAATACACCATGCCGTAA

Upstream 100 bases:

>100_bases
GTGCGCCGGGCCGGGCCAGTTGCCACCTTGCCAAGCCTTTTTCCCGGCGCTACTCTTTATACATCAGGTCCGGCATGAAT
ACGGGCCATGAGGAGGTTTT

Downstream 100 bases:

>100_bases
AGCTACGGTTGAGCCTGTAGGCGCATGGTTGCGGGGGAAGGCCCAGAGGCTGCCCACGGGCGTTCACGGTATTGCATGCC
GGAATGCGCAGGGTGGCCTC

Product: Sel1 domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 222; Mature: 222

Protein sequence:

>222_residues
MKKYYGVIVLALALFLFQGMTVSAQPTDQVEQKLNEAWVAYNIGQYKKVLQLVQPLASDGNARAQIILGRCYENGLGVPQ
DMETAAKWFRLAAEQNNSEAQVLLAYQYELGQGVPKDDAAVVRLMTSAANAGNAEALFNLALYHGQGKYGFAKNPAESFR
LAKMAADQGNAQAQRYVGACYEYGVGVPENATEAQVWYGKAKAQGLEIEGNVFNFVREYTMP

Sequences:

>Translated_222_residues
MKKYYGVIVLALALFLFQGMTVSAQPTDQVEQKLNEAWVAYNIGQYKKVLQLVQPLASDGNARAQIILGRCYENGLGVPQ
DMETAAKWFRLAAEQNNSEAQVLLAYQYELGQGVPKDDAAVVRLMTSAANAGNAEALFNLALYHGQGKYGFAKNPAESFR
LAKMAADQGNAQAQRYVGACYEYGVGVPENATEAQVWYGKAKAQGLEIEGNVFNFVREYTMP
>Mature_222_residues
MKKYYGVIVLALALFLFQGMTVSAQPTDQVEQKLNEAWVAYNIGQYKKVLQLVQPLASDGNARAQIILGRCYENGLGVPQ
DMETAAKWFRLAAEQNNSEAQVLLAYQYELGQGVPKDDAAVVRLMTSAANAGNAEALFNLALYHGQGKYGFAKNPAESFR
LAKMAADQGNAQAQRYVGACYEYGVGVPENATEAQVWYGKAKAQGLEIEGNVFNFVREYTMP

Specific function: Unknown

COG id: COG0790

COG function: function code R; FOG: TPR repeat, SEL1 subfamily

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To E.coli ybeT [H]

Homologues:

Organism=Homo sapiens, GI217330658, Length=176, Percent_Identity=31.25, Blast_Score=65, Evalue=5e-11,
Organism=Homo sapiens, GI217330656, Length=176, Percent_Identity=31.25, Blast_Score=65, Evalue=5e-11,
Organism=Escherichia coli, GI87081769, Length=156, Percent_Identity=33.3333333333333, Blast_Score=65, Evalue=3e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006597
- InterPro:   IPR011990 [H]

Pfam domain/function: PF08238 Sel1 [H]

EC number: NA

Molecular weight: Translated: 24353; Mature: 24353

Theoretical pI: Translated: 5.33; Mature: 5.33

Prosite motif: PS00139 THIOL_PROTEASE_CYS

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKYYGVIVLALALFLFQGMTVSAQPTDQVEQKLNEAWVAYNIGQYKKVLQLVQPLASDG
CCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHCCC
NARAQIILGRCYENGLGVPQDMETAAKWFRLAAEQNNSEAQVLLAYQYELGQGVPKDDAA
CCEEEEEEEEHHHCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEEEEEHHCCCCCCCHHH
VVRLMTSAANAGNAEALFNLALYHGQGKYGFAKNPAESFRLAKMAADQGNAQAQRYVGAC
HHHHHHHHCCCCCHHHHHHHHEEECCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHH
YEYGVGVPENATEAQVWYGKAKAQGLEIEGNVFNFVREYTMP
HHHCCCCCCCCCCHHEEECHHHCCCEEECCHHHHHHHHHCCC
>Mature Secondary Structure
MKKYYGVIVLALALFLFQGMTVSAQPTDQVEQKLNEAWVAYNIGQYKKVLQLVQPLASDG
CCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHCCC
NARAQIILGRCYENGLGVPQDMETAAKWFRLAAEQNNSEAQVLLAYQYELGQGVPKDDAA
CCEEEEEEEEHHHCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEEEEEHHCCCCCCCHHH
VVRLMTSAANAGNAEALFNLALYHGQGKYGFAKNPAESFRLAKMAADQGNAQAQRYVGAC
HHHHHHHHCCCCCHHHHHHHHEEECCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHH
YEYGVGVPENATEAQVWYGKAKAQGLEIEGNVFNFVREYTMP
HHHCCCCCCCCCCHHEEECHHHCCCEEECCHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]