Click here to switch to the map view.

The map label for this gene is yvrO [H]

Identifier: 220904585

GI number: 220904585

Start: 1565951

End: 1566763

Strand: Direct

Name: yvrO [H]

Synonym: Ddes_1317

Alternate gene names: 220904585

Gene position: 1565951-1566763 (Clockwise)

Preceding gene: 220904584

Following gene: 220904586

Centisome position: 54.5

GC content: 61.62

Gene sequence:

>813_bases
ATGGATAATCAGGTTTTTTCCCTGCGGCAGATAAGCAAAAGCCGCCCCGGCGCTGAAGGCTTCAGCCTGCATGTGGAACG
TCTTGATATTCCCCGCAGTGGCCTGCTGGCGCTGGTGGGACCCAGCGGTTGCGGCAAGAGCACGGCTCTGGACTTACTGG
CCTGCATACTCCGTCCCGATGTGCCTCCGGGTATGAGTACCGAAAAGGAGCAGCGCTTTCTGTTCAGCCCTGATTCGCAT
GACAACATTGATGTGTTGCAGGCCTGGCGCGCGGGCGGCCCCAACGCCCTTGCCCTGCTTCGCCAGCGCCACCTGGGCTA
TGTATTGCAGACCGGCGGACTGCTGCCCTTTCTTACAGCCGGCGATAATATTCTTCTGCGCTGCCGCAGCCTGGGCTGCT
TGGAAGAACGCAGGCCGCAGGTGCAGGCAATTGTGGAAGGGCTTGGTATCGGACGTCTGCTTGACCAGTATCCGGGAACG
CTGTCGGTCGGCGAACGCCAGCGGGCGGCCATTGCCGCCGCTCTGGCCCACGGTCCCGGCGTGGTGCTGGCCGATGAGCC
TACGGCAGCCCTTGACCCCATGCATGCCCGCAACGCCCTACGCATTTTTACCGATCTGGCCCGTAAACTGCAAATTACCG
TGATAATGGTAACGCATAACCTCGAAATGGCTGTAGAAGCGGGTTTCACCCCGGTGCAGGTCATCCCCGAAGAAAGCGGA
AAAGGCATCGTATCACGCATTGACCACGCGGCAGACTCAGGCGCGCCCCGCAGCAGGCCCCGCGATCGGGACCCCCGGGA
GGTCCAGGCATGA

Upstream 100 bases:

>100_bases
GCGCCAACTGGGAAAGCTTCGGCCAGCCCAATCCCGGCGACTGGGTATACCGCGTACCTTTGAGCATGCTGCCCTAGACT
GAGTCTGACAAGGCCTTCAT

Downstream 100 bases:

>100_bases
GCCGCCGCCTCAATGCTTCCGGTCGTTTTCCGGCTCTGACGCAGATGCTCCGCCTTTCCTGGCGGGACTACGCGCGGGAA
AAGCTGCTCTCCGCCTGCGC

Product: ABC transporter-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 270; Mature: 270

Protein sequence:

>270_residues
MDNQVFSLRQISKSRPGAEGFSLHVERLDIPRSGLLALVGPSGCGKSTALDLLACILRPDVPPGMSTEKEQRFLFSPDSH
DNIDVLQAWRAGGPNALALLRQRHLGYVLQTGGLLPFLTAGDNILLRCRSLGCLEERRPQVQAIVEGLGIGRLLDQYPGT
LSVGERQRAAIAAALAHGPGVVLADEPTAALDPMHARNALRIFTDLARKLQITVIMVTHNLEMAVEAGFTPVQVIPEESG
KGIVSRIDHAADSGAPRSRPRDRDPREVQA

Sequences:

>Translated_270_residues
MDNQVFSLRQISKSRPGAEGFSLHVERLDIPRSGLLALVGPSGCGKSTALDLLACILRPDVPPGMSTEKEQRFLFSPDSH
DNIDVLQAWRAGGPNALALLRQRHLGYVLQTGGLLPFLTAGDNILLRCRSLGCLEERRPQVQAIVEGLGIGRLLDQYPGT
LSVGERQRAAIAAALAHGPGVVLADEPTAALDPMHARNALRIFTDLARKLQITVIMVTHNLEMAVEAGFTPVQVIPEESG
KGIVSRIDHAADSGAPRSRPRDRDPREVQA
>Mature_270_residues
MDNQVFSLRQISKSRPGAEGFSLHVERLDIPRSGLLALVGPSGCGKSTALDLLACILRPDVPPGMSTEKEQRFLFSPDSH
DNIDVLQAWRAGGPNALALLRQRHLGYVLQTGGLLPFLTAGDNILLRCRSLGCLEERRPQVQAIVEGLGIGRLLDQYPGT
LSVGERQRAAIAAALAHGPGVVLADEPTAALDPMHARNALRIFTDLARKLQITVIMVTHNLEMAVEAGFTPVQVIPEESG
KGIVSRIDHAADSGAPRSRPRDRDPREVQA

Specific function: Unknown

COG id: COG1136

COG function: function code V; ABC-type antimicrobial peptide transport system, ATPase component

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transporter domain [H]

Homologues:

Organism=Escherichia coli, GI1786703, Length=201, Percent_Identity=38.3084577114428, Blast_Score=96, Evalue=2e-21,
Organism=Escherichia coli, GI1787105, Length=229, Percent_Identity=33.1877729257642, Blast_Score=94, Evalue=1e-20,
Organism=Escherichia coli, GI1787089, Length=215, Percent_Identity=35.3488372093023, Blast_Score=89, Evalue=4e-19,
Organism=Escherichia coli, GI1788761, Length=209, Percent_Identity=33.0143540669856, Blast_Score=87, Evalue=8e-19,
Organism=Escherichia coli, GI1787029, Length=205, Percent_Identity=33.6585365853659, Blast_Score=87, Evalue=1e-18,
Organism=Escherichia coli, GI87081834, Length=207, Percent_Identity=32.3671497584541, Blast_Score=85, Evalue=5e-18,
Organism=Escherichia coli, GI1790544, Length=215, Percent_Identity=31.1627906976744, Blast_Score=85, Evalue=6e-18,
Organism=Escherichia coli, GI1786398, Length=225, Percent_Identity=28, Blast_Score=84, Evalue=1e-17,
Organism=Escherichia coli, GI1786563, Length=232, Percent_Identity=31.0344827586207, Blast_Score=83, Evalue=2e-17,
Organism=Escherichia coli, GI48994943, Length=196, Percent_Identity=28.0612244897959, Blast_Score=79, Evalue=2e-16,
Organism=Escherichia coli, GI1790467, Length=195, Percent_Identity=32.8205128205128, Blast_Score=78, Evalue=6e-16,
Organism=Escherichia coli, GI87081709, Length=199, Percent_Identity=31.1557788944724, Blast_Score=78, Evalue=7e-16,
Organism=Escherichia coli, GI1789032, Length=212, Percent_Identity=29.7169811320755, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1788225, Length=204, Percent_Identity=29.4117647058824, Blast_Score=76, Evalue=2e-15,
Organism=Escherichia coli, GI1787370, Length=199, Percent_Identity=30.6532663316583, Blast_Score=75, Evalue=3e-15,
Organism=Escherichia coli, GI1789962, Length=254, Percent_Identity=31.1023622047244, Blast_Score=74, Evalue=7e-15,
Organism=Escherichia coli, GI1786253, Length=203, Percent_Identity=29.5566502463054, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1788450, Length=204, Percent_Identity=32.3529411764706, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI87081791, Length=228, Percent_Identity=29.3859649122807, Blast_Score=73, Evalue=3e-14,
Organism=Escherichia coli, GI1789873, Length=187, Percent_Identity=32.0855614973262, Blast_Score=72, Evalue=3e-14,
Organism=Escherichia coli, GI1787164, Length=212, Percent_Identity=31.1320754716981, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI1788053, Length=196, Percent_Identity=32.1428571428571, Blast_Score=69, Evalue=2e-13,
Organism=Escherichia coli, GI1787712, Length=188, Percent_Identity=30.3191489361702, Blast_Score=68, Evalue=7e-13,
Organism=Escherichia coli, GI1788644, Length=139, Percent_Identity=37.410071942446, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI87081782, Length=208, Percent_Identity=29.3269230769231, Blast_Score=65, Evalue=5e-12,
Organism=Escherichia coli, GI145693107, Length=239, Percent_Identity=30.1255230125523, Blast_Score=65, Evalue=6e-12,
Organism=Escherichia coli, GI1786872, Length=187, Percent_Identity=29.9465240641711, Blast_Score=65, Evalue=7e-12,
Organism=Escherichia coli, GI1789672, Length=191, Percent_Identity=29.8429319371728, Blast_Score=64, Evalue=7e-12,
Organism=Escherichia coli, GI1790739, Length=204, Percent_Identity=32.3529411764706, Blast_Score=63, Evalue=2e-11,
Organism=Escherichia coli, GI1789593, Length=217, Percent_Identity=27.6497695852535, Blast_Score=63, Evalue=2e-11,
Organism=Escherichia coli, GI1786981, Length=198, Percent_Identity=29.7979797979798, Blast_Score=61, Evalue=6e-11,
Organism=Escherichia coli, GI1788506, Length=203, Percent_Identity=32.0197044334975, Blast_Score=61, Evalue=6e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003439
- InterPro:   IPR017871
- InterPro:   IPR003593 [H]

Pfam domain/function: PF00005 ABC_tran [H]

EC number: NA

Molecular weight: Translated: 29130; Mature: 29130

Theoretical pI: Translated: 7.59; Mature: 7.59

Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDNQVFSLRQISKSRPGAEGFSLHVERLDIPRSGLLALVGPSGCGKSTALDLLACILRPD
CCCCHHHHHHHHHCCCCCCCEEEEEEEECCCCCCEEEEECCCCCCHHHHHHHHHHHHCCC
VPPGMSTEKEQRFLFSPDSHDNIDVLQAWRAGGPNALALLRQRHLGYVLQTGGLLPFLTA
CCCCCCCCCCCCEEECCCCCCCHHHHHHHHCCCCHHHHHHHHHHCCEEEECCCCEEEEEC
GDNILLRCRSLGCLEERRPQVQAIVEGLGIGRLLDQYPGTLSVGERQRAAIAAALAHGPG
CCCEEEEEHHCCCHHHHCHHHHHHHHHCCHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCE
VVLADEPTAALDPMHARNALRIFTDLARKLQITVIMVTHNLEMAVEAGFTPVQVIPEESG
EEEECCCCHHCCCHHHHHHHHHHHHHHHHEEEEEEEEECCCEEHHHCCCCCEEEECCCCC
KGIVSRIDHAADSGAPRSRPRDRDPREVQA
CHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MDNQVFSLRQISKSRPGAEGFSLHVERLDIPRSGLLALVGPSGCGKSTALDLLACILRPD
CCCCHHHHHHHHHCCCCCCCEEEEEEEECCCCCCEEEEECCCCCCHHHHHHHHHHHHCCC
VPPGMSTEKEQRFLFSPDSHDNIDVLQAWRAGGPNALALLRQRHLGYVLQTGGLLPFLTA
CCCCCCCCCCCCEEECCCCCCCHHHHHHHHCCCCHHHHHHHHHHCCEEEECCCCEEEEEC
GDNILLRCRSLGCLEERRPQVQAIVEGLGIGRLLDQYPGTLSVGERQRAAIAAALAHGPG
CCCEEEEEHHCCCHHHHCHHHHHHHHHCCHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCE
VVLADEPTAALDPMHARNALRIFTDLARKLQITVIMVTHNLEMAVEAGFTPVQVIPEESG
EEEECCCCHHCCCHHHHHHHHHHHHHHHHEEEEEEEEECCCEEHHHCCCCCEEEECCCCC
KGIVSRIDHAADSGAPRSRPRDRDPREVQA
CHHHHHHHHHHCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9639930; 9384377 [H]