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The map label for this gene is rnfD [H]

Identifier: 220904508

GI number: 220904508

Start: 1454189

End: 1455151

Strand: Direct

Name: rnfD [H]

Synonym: Ddes_1239

Alternate gene names: 220904508

Gene position: 1454189-1455151 (Clockwise)

Preceding gene: 220904507

Following gene: 220904509

Centisome position: 50.61

GC content: 56.8

Gene sequence:

>963_bases
ATGTCATCTGCTTCATCAGGCTCTGTTCTGCTTGCCATGAGCGTTCCGTCTTTCTGGCACTGCGGGCGCACCATTCGCAA
GTACAGCCTTTTCACCATTCTTTGCTGTTTGCCGGCAGCAGCCATGGCTATCTGGAACTGGGGCCTGCCCGCCCTTCGGG
TCATGTCTCTCAGCGTTGCTGCCTGTGTAGTTGTGGAAGCCCTGTGCGAAAAAGCCATGGGCCGGCAGATAGAGGTAGAC
GACTTTACCGCCGTATATGCGGGACTCATTTTTGCTTTTCTACTACCGGCAGATGCCCCCTGGTGGCTTGTCATCCTTGG
GGCGATTATCTGCATCACGTTGGGCAAAATGGCTTTTGGCGGTCTTGGGGCCAACCCGGTAAGCACGCCGCTCGTGGGCT
GGGCCGTTCTGGCAGTGTCCTTTCCCATTTTTATGGACCCTAACGCCATGCAGCTTGGTACGGACTTTATTGATCCCCTG
GTGCGCCTGAAGTTCTTCGGCGCTGCCAGCGCCGACTCCATCCCCTTGCTGGACCTGCTCATGGGAAAACAGATCAGCGG
TCTGGGGGCGGGCCAGGTGCTTGGCCTTTTTGCGGGCGGCTCTTTCCTCTGTGCCACAGGCACGGTGCGTTGGCAGATCA
GCCTGGGCTTTTTCGTTGGTGTTGCTGCTCTGGCTGCATTTTTTCATATGTCAGACCCGGTCCACAATGCTTCTGCCTTT
TTCCATCTGTGCACCGGATCGGTCATGCTTGGCGGTTTTTTTATGGCCACCGAAATGGGCACAACGCCCCTGCGCCCGCT
GCCCATGTTTCTTTACGGCCTTACCGGGGGGCTGCTGGTCATGGTCATCCGCAAGTATGGCGTCTGGATTGACGGAGTTC
CGTTTGCCATTCTTCTGGCAAACATGTTGACCCCTTATCTCGATATGCTACGCCCCAGACCTTTCGGAGGTAGCCGCCCA
TGA

Upstream 100 bases:

>100_bases
CGGATGACGCACTGGGCATGATCGTCGCCGACAATGCCGAGGCTTCAGCCGAAGCCGAAAACAATAACAGGGCTGCCCGT
GAGCAGCGGGGAGGCAACTG

Downstream 100 bases:

>100_bases
TGGCCATAGTACGCATGGTGGTAGTGCTGTCGGTTCTTTGCGGGCTTTCCGGTTTTGCCCTTTCGTATCTTAAAATGATC
ACCGCTACAGCCATTGAAGA

Product: NQR2 and RnfD family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 320; Mature: 319

Protein sequence:

>320_residues
MSSASSGSVLLAMSVPSFWHCGRTIRKYSLFTILCCLPAAAMAIWNWGLPALRVMSLSVAACVVVEALCEKAMGRQIEVD
DFTAVYAGLIFAFLLPADAPWWLVILGAIICITLGKMAFGGLGANPVSTPLVGWAVLAVSFPIFMDPNAMQLGTDFIDPL
VRLKFFGAASADSIPLLDLLMGKQISGLGAGQVLGLFAGGSFLCATGTVRWQISLGFFVGVAALAAFFHMSDPVHNASAF
FHLCTGSVMLGGFFMATEMGTTPLRPLPMFLYGLTGGLLVMVIRKYGVWIDGVPFAILLANMLTPYLDMLRPRPFGGSRP

Sequences:

>Translated_320_residues
MSSASSGSVLLAMSVPSFWHCGRTIRKYSLFTILCCLPAAAMAIWNWGLPALRVMSLSVAACVVVEALCEKAMGRQIEVD
DFTAVYAGLIFAFLLPADAPWWLVILGAIICITLGKMAFGGLGANPVSTPLVGWAVLAVSFPIFMDPNAMQLGTDFIDPL
VRLKFFGAASADSIPLLDLLMGKQISGLGAGQVLGLFAGGSFLCATGTVRWQISLGFFVGVAALAAFFHMSDPVHNASAF
FHLCTGSVMLGGFFMATEMGTTPLRPLPMFLYGLTGGLLVMVIRKYGVWIDGVPFAILLANMLTPYLDMLRPRPFGGSRP
>Mature_319_residues
SSASSGSVLLAMSVPSFWHCGRTIRKYSLFTILCCLPAAAMAIWNWGLPALRVMSLSVAACVVVEALCEKAMGRQIEVDD
FTAVYAGLIFAFLLPADAPWWLVILGAIICITLGKMAFGGLGANPVSTPLVGWAVLAVSFPIFMDPNAMQLGTDFIDPLV
RLKFFGAASADSIPLLDLLMGKQISGLGAGQVLGLFAGGSFLCATGTVRWQISLGFFVGVAALAAFFHMSDPVHNASAFF
HLCTGSVMLGGFFMATEMGTTPLRPLPMFLYGLTGGLLVMVIRKYGVWIDGVPFAILLANMLTPYLDMLRPRPFGGSRP

Specific function: May be part of a membrane complex involved in electron transport [H]

COG id: COG4658

COG function: function code C; Predicted NADH:ubiquinone oxidoreductase, subunit RnfD

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nqrB/rnfD family [H]

Homologues:

Organism=Escherichia coli, GI1787917, Length=340, Percent_Identity=29.7058823529412, Blast_Score=141, Evalue=4e-35,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011303
- InterPro:   IPR004338 [H]

Pfam domain/function: PF03116 NQR2_RnfD_RnfE [H]

EC number: NA

Molecular weight: Translated: 34078; Mature: 33947

Theoretical pI: Translated: 7.99; Mature: 7.99

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.5 %Cys     (Translated Protein)
5.3 %Met     (Translated Protein)
7.8 %Cys+Met (Translated Protein)
2.5 %Cys     (Mature Protein)
5.0 %Met     (Mature Protein)
7.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSASSGSVLLAMSVPSFWHCGRTIRKYSLFTILCCLPAAAMAIWNWGLPALRVMSLSVA
CCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
ACVVVEALCEKAMGRQIEVDDFTAVYAGLIFAFLLPADAPWWLVILGAIICITLGKMAFG
HHHHHHHHHHHHHCCEECCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHC
GLGANPVSTPLVGWAVLAVSFPIFMDPNAMQLGTDFIDPLVRLKFFGAASADSIPLLDLL
CCCCCCCCCHHHHHHHHHHHCCCEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHH
MGKQISGLGAGQVLGLFAGGSFLCATGTVRWQISLGFFVGVAALAAFFHMSDPVHNASAF
HCCCCCCCCCHHHHHHHCCCCEEEECCEEEEEEEHHHHHHHHHHHHHHHCCCCCCHHHHH
FHLCTGSVMLGGFFMATEMGTTPLRPLPMFLYGLTGGLLVMVIRKYGVWIDGVPFAILLA
HHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHH
NMLTPYLDMLRPRPFGGSRP
HHHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure 
SSASSGSVLLAMSVPSFWHCGRTIRKYSLFTILCCLPAAAMAIWNWGLPALRVMSLSVA
CCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
ACVVVEALCEKAMGRQIEVDDFTAVYAGLIFAFLLPADAPWWLVILGAIICITLGKMAFG
HHHHHHHHHHHHHCCEECCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHC
GLGANPVSTPLVGWAVLAVSFPIFMDPNAMQLGTDFIDPLVRLKFFGAASADSIPLLDLL
CCCCCCCCCHHHHHHHHHHHCCCEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHH
MGKQISGLGAGQVLGLFAGGSFLCATGTVRWQISLGFFVGVAALAAFFHMSDPVHNASAF
HCCCCCCCCCHHHHHHHCCCCEEEECCEEEEEEEHHHHHHHHHHHHHHHCCCCCCHHHHH
FHLCTGSVMLGGFFMATEMGTTPLRPLPMFLYGLTGGLLVMVIRKYGVWIDGVPFAILLA
HHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHH
NMLTPYLDMLRPRPFGGSRP
HHHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA