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The map label for this gene is rnfC [H]

Identifier: 220904507

GI number: 220904507

Start: 1452870

End: 1454189

Strand: Direct

Name: rnfC [H]

Synonym: Ddes_1238

Alternate gene names: 220904507

Gene position: 1452870-1454189 (Clockwise)

Preceding gene: 220904506

Following gene: 220904508

Centisome position: 50.56

GC content: 56.36

Gene sequence:

>1320_bases
ATGAAAGAACTTTTTCAGGTAATCAATGACCCCCGGTTTCACCTGCTTTACGGGGTGACGCAACGCTTCAGCCCGGGACC
ACAACCGGACAGGGTGCGGCTCAACCGCGAAAACTGCAAGCTGGTTGATGGCGTTACAAAAAAAGCGCTTGTCTACCCTT
ACAAGCTTCTGGCCGAACATTCTTCGCCCTTGAAAGGCGATCTGTTTTCGCCAGTTTATGGCAAGATCAGTGAAGTAAGC
CAAAGCAGTATTTTTATTGACGCCATTGAACCGGATGATGAATTGCGCCAGGCCGCAGAAGCCGTACAGAAAACCGACCT
GCTCGCCGCTCCTCAGCGGGGTGAAGAGTTGCGGCCATTGCTCAAAAGTATGGGGCTGAACACCAGATCGCTGGGGCAGC
CCTGCGACACGCTTATTATCAACGGCCTTAATCCGGATCCGGGCGTGACCTGGGCTGAACCCATGCTGCTGGCACATCAG
GAAACCCTGCGTGATGGCCTTGAAATGCTACGCCGTCTCTCACCCGCCAAACGAATCTTGCTGGCGGTGCCCAAGGAAAT
GCGCCTGCATCACAACGACATTGAGGTGGTGCACGTGCCTTCGCAGTATCCGGCCAGCGTTAACGCCCTTGTCATCAAGG
CTGTGACCGGGCAGGAAAACCCCAAGGGCGTCGGTATAGTAGGCCTGCACAATATCTGGAGCCTGGGGCGGATAGCCCGA
ACCTGTCTGCCCCTTGTGGAGAGTGTCGTCACTATTGGCAACTGCGAATATTCGGGGAACTATATCGTAAAAGACGGCAG
CCTGATCGGCCAGCTGCTTGAATTCTCGCACATCACTCTGCGCAATGGCGACACGCTTGTCCGGGGAGGCCCCTTGCGGG
GTGAAAGCCTGGAAAAGCTTGATCGTAGTGTTACCCGCGGTTCAACAGGAGTTTTTGTTGTCGAGGCAGGCACTATTCCT
CCCATGAAAGGACACAGCCCCTGCGTGAACTGTGGAGCCTGTGTGCTGATCTGCCCTGCCCGGCTCAGCCCGAGCATTTT
GAGCCGCAATGCCGAGTTTGCCCTGCACGAGCGCAATCTGGATGAACACATCGGCTCCTGTCTTGAATGCGGCCTGTGCG
GCTATGTCTGCATTGCCCGCAGGCCGGTCCTGCAATATATCCGTCTGTCCAAATTCAAATTGGCGGAAGCCGCCGCAGCC
AGGGGAAAAGCACTGGATGCGGATGACGCACTGGGCATGATCGTCGCCGACAATGCCGAGGCTTCAGCCGAAGCCGAAAA
CAATAACAGGGCTGCCCGTGAGCAGCGGGGAGGCAACTGA

Upstream 100 bases:

>100_bases
GCCTTTCATAAGCAATGCATGGGCTGCCATGAGAAGCTTGGCAAAGGTCCTTTCGACAAGCAACAATGCGGCCAGTGTCA
TACTGGCAAGTGAGGCGGGG

Downstream 100 bases:

>100_bases
TGTCATCTGCTTCATCAGGCTCTGTTCTGCTTGCCATGAGCGTTCCGTCTTTCTGGCACTGCGGGCGCACCATTCGCAAG
TACAGCCTTTTCACCATTCT

Product: Respiratory-chain NADH dehydrogenase domain 51 kDa subunit

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 439; Mature: 439

Protein sequence:

>439_residues
MKELFQVINDPRFHLLYGVTQRFSPGPQPDRVRLNRENCKLVDGVTKKALVYPYKLLAEHSSPLKGDLFSPVYGKISEVS
QSSIFIDAIEPDDELRQAAEAVQKTDLLAAPQRGEELRPLLKSMGLNTRSLGQPCDTLIINGLNPDPGVTWAEPMLLAHQ
ETLRDGLEMLRRLSPAKRILLAVPKEMRLHHNDIEVVHVPSQYPASVNALVIKAVTGQENPKGVGIVGLHNIWSLGRIAR
TCLPLVESVVTIGNCEYSGNYIVKDGSLIGQLLEFSHITLRNGDTLVRGGPLRGESLEKLDRSVTRGSTGVFVVEAGTIP
PMKGHSPCVNCGACVLICPARLSPSILSRNAEFALHERNLDEHIGSCLECGLCGYVCIARRPVLQYIRLSKFKLAEAAAA
RGKALDADDALGMIVADNAEASAEAENNNRAAREQRGGN

Sequences:

>Translated_439_residues
MKELFQVINDPRFHLLYGVTQRFSPGPQPDRVRLNRENCKLVDGVTKKALVYPYKLLAEHSSPLKGDLFSPVYGKISEVS
QSSIFIDAIEPDDELRQAAEAVQKTDLLAAPQRGEELRPLLKSMGLNTRSLGQPCDTLIINGLNPDPGVTWAEPMLLAHQ
ETLRDGLEMLRRLSPAKRILLAVPKEMRLHHNDIEVVHVPSQYPASVNALVIKAVTGQENPKGVGIVGLHNIWSLGRIAR
TCLPLVESVVTIGNCEYSGNYIVKDGSLIGQLLEFSHITLRNGDTLVRGGPLRGESLEKLDRSVTRGSTGVFVVEAGTIP
PMKGHSPCVNCGACVLICPARLSPSILSRNAEFALHERNLDEHIGSCLECGLCGYVCIARRPVLQYIRLSKFKLAEAAAA
RGKALDADDALGMIVADNAEASAEAENNNRAAREQRGGN
>Mature_439_residues
MKELFQVINDPRFHLLYGVTQRFSPGPQPDRVRLNRENCKLVDGVTKKALVYPYKLLAEHSSPLKGDLFSPVYGKISEVS
QSSIFIDAIEPDDELRQAAEAVQKTDLLAAPQRGEELRPLLKSMGLNTRSLGQPCDTLIINGLNPDPGVTWAEPMLLAHQ
ETLRDGLEMLRRLSPAKRILLAVPKEMRLHHNDIEVVHVPSQYPASVNALVIKAVTGQENPKGVGIVGLHNIWSLGRIAR
TCLPLVESVVTIGNCEYSGNYIVKDGSLIGQLLEFSHITLRNGDTLVRGGPLRGESLEKLDRSVTRGSTGVFVVEAGTIP
PMKGHSPCVNCGACVLICPARLSPSILSRNAEFALHERNLDEHIGSCLECGLCGYVCIARRPVLQYIRLSKFKLAEAAAA
RGKALDADDALGMIVADNAEASAEAENNNRAAREQRGGN

Specific function: May be part of a membrane complex involved in electron transport [H]

COG id: COG4656

COG function: function code C; Predicted NADH:ubiquinone oxidoreductase, subunit RnfC

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein [H]

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 4Fe-4S ferredoxin-type domains [H]

Homologues:

Organism=Escherichia coli, GI1787916, Length=332, Percent_Identity=25.6024096385542, Blast_Score=104, Evalue=1e-23,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017896
- InterPro:   IPR017900
- InterPro:   IPR010208
- InterPro:   IPR012285
- InterPro:   IPR009051
- InterPro:   IPR011538
- InterPro:   IPR019554 [H]

Pfam domain/function: PF01512 Complex1_51K; PF10531 SLBB [H]

EC number: NA

Molecular weight: Translated: 47850; Mature: 47850

Theoretical pI: Translated: 7.46; Mature: 7.46

Prosite motif: PS00198 4FE4S_FERREDOXIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.7 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
2.7 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKELFQVINDPRFHLLYGVTQRFSPGPQPDRVRLNRENCKLVDGVTKKALVYPYKLLAEH
CHHHHHHHCCCCEEEEEEHHHHCCCCCCCCCEEECCCCCEEHHCCCHHHHHHHHHHHHCC
SSPLKGDLFSPVYGKISEVSQSSIFIDAIEPDDELRQAAEAVQKTDLLAAPQRGEELRPL
CCCCCCCCCCHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHH
LKSMGLNTRSLGQPCDTLIINGLNPDPGVTWAEPMLLAHQETLRDGLEMLRRLSPAKRIL
HHHCCCCCHHCCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCHHHHHH
LAVPKEMRLHHNDIEVVHVPSQYPASVNALVIKAVTGQENPKGVGIVGLHNIWSLGRIAR
HCCCHHHHCCCCCEEEEECCCCCCCCCCEEEEEEECCCCCCCCEEEEEHHHHHHHHHHHH
TCLPLVESVVTIGNCEYSGNYIVKDGSLIGQLLEFSHITLRNGDTLVRGGPLRGESLEKL
HHHHHHHHHHHHCCCEECCCEEEECHHHHHHHHHHCEEEEECCCEEEECCCCCCHHHHHH
DRSVTRGSTGVFVVEAGTIPPMKGHSPCVNCGACVLICPARLSPSILSRNAEFALHERNL
HHHHHCCCCCEEEEECCCCCCCCCCCCCCCCCCEEEEECCCCCHHHHCCCCCEEEECCCH
DEHIGSCLECGLCGYVCIARRPVLQYIRLSKFKLAEAAAARGKALDADDALGMIVADNAE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCC
ASAEAENNNRAAREQRGGN
CCCCCCCCCHHHHHHCCCC
>Mature Secondary Structure
MKELFQVINDPRFHLLYGVTQRFSPGPQPDRVRLNRENCKLVDGVTKKALVYPYKLLAEH
CHHHHHHHCCCCEEEEEEHHHHCCCCCCCCCEEECCCCCEEHHCCCHHHHHHHHHHHHCC
SSPLKGDLFSPVYGKISEVSQSSIFIDAIEPDDELRQAAEAVQKTDLLAAPQRGEELRPL
CCCCCCCCCCHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHH
LKSMGLNTRSLGQPCDTLIINGLNPDPGVTWAEPMLLAHQETLRDGLEMLRRLSPAKRIL
HHHCCCCCHHCCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCHHHHHH
LAVPKEMRLHHNDIEVVHVPSQYPASVNALVIKAVTGQENPKGVGIVGLHNIWSLGRIAR
HCCCHHHHCCCCCEEEEECCCCCCCCCCEEEEEEECCCCCCCCEEEEEHHHHHHHHHHHH
TCLPLVESVVTIGNCEYSGNYIVKDGSLIGQLLEFSHITLRNGDTLVRGGPLRGESLEKL
HHHHHHHHHHHHCCCEECCCEEEECHHHHHHHHHHCEEEEECCCEEEECCCCCCHHHHHH
DRSVTRGSTGVFVVEAGTIPPMKGHSPCVNCGACVLICPARLSPSILSRNAEFALHERNL
HHHHHCCCCCEEEEECCCCCCCCCCCCCCCCCCEEEEECCCCCHHHHCCCCCEEEECCCH
DEHIGSCLECGLCGYVCIARRPVLQYIRLSKFKLAEAAAARGKALDADDALGMIVADNAE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCC
ASAEAENNNRAAREQRGGN
CCCCCCCCCHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: 4Fe-4S clusters [C]

Metal ions: Iron-Sulfur [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11248100 [H]