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The map label for this gene is rarA [H]

Identifier: 220904438

GI number: 220904438

Start: 1375824

End: 1377047

Strand: Reverse

Name: rarA [H]

Synonym: Ddes_1168

Alternate gene names: 220904438

Gene position: 1377047-1375824 (Counterclockwise)

Preceding gene: 220904439

Following gene: 220904437

Centisome position: 47.92

GC content: 58.01

Gene sequence:

>1224_bases
ATGAGTGTAAGCAAGCCCCTGCCTGAGCGCATGCGCCCGGATGATCTGGCCCTTTTTCTTGGGCAGACGCATCTCGGCAG
CCGCCTTCGTTCCCTCATGCAGGCCAAGCGTCTGCCGAGCCTGCTGTTTTTTGGCCCCCCGGGTTGCGGAAAATCCACAC
TGGCCCTTTTGCTGGCCAAGGGCACAGGAAAAACTTTTCTGCGCCTGAGTGCGCCCGAAGCCGGATTGCAGCACCTGCGA
CGGTCGCTTTCAGGCATTGAAATTCTTGTGCTGGATGAACTGCACCGCTTTTCCAAAGCCCAGCAGGATTTTTTTCTGCC
CCTGGTGGAATCGGGTGACCTGACCCTGCTCGCCACAACGACGGAAAATCCTTCCTTCAGTGTAACGCGACAGCTCCTTT
CACGCTTGCATGTGCTCCGCCTCCGCCCGCTGGGCCGTACAGAACTTGTAGAGCTGGCACGCCGCGGTGCGATGGACCTG
CAGGTGGAAATGCCTGACGAGCTGGCCGAACTTCTGGCAGGAGTGGCCCACGGAGATGCGCGCACACTGCTGAACCTTGT
GGAATATGTGGCAGCCCTGCCCTCTGATTTGCGCGAGATCGAGCATATAAAAGCCGCCCTGCCCGAAGTGCTGGTGCGCC
ACGACAAGGACGGTGACAACCATTACGAGCTTGCTTCAGCCCTCATCAAGTCCATTCGTGGAAGTGATGTGGACGCGGCC
CTCTACTACCTGGCCTGCCTTCTTGAAGGCGGCGAAGATCCCCGCTTCATCTGCCGCCGCCTTATTCTTTCCGCCTCTGA
AGATGTGGGCCTGGCCGATCCCAATGCCTTGCAGCTGGCCGTGGCATGCCAGCAGGCCGTAGAATTCGTCGGCATGCCAG
AAGGCTTCATTCCGCTTGCGGAAACTGTGACCTACCTGGCGCTGGCGCGCAAAAGCAATGCGACGTACGCTGCGTACCTT
AACGCGCAGCGTGAAATCAAGCTCAACGGGTCGCATCCGGTTCCCCTTCACCTGCGCAACCCTTCCACGCAAATGCATAA
AGAATGGGGATACGGCAAAGAATACAAATATCCCCACAACTATCCGGACTCCTGGATTCAGCAGACCTATCTGCCGCAAG
AACTTGAAGGACGGCGCTTTTACCAGCCGCGCGATAACGGCGAAGAGCCTCGCCTCACGCAATGGTGGCGCAGGCTGCAC
AAAATCAAAAAGACGGAAGAATAG

Upstream 100 bases:

>100_bases
GTGTGCTGCGTTGCGAGACAGCGGCCACCCTGTGCCTGGGGCTGCACTGGTGGGCCTCGCAACTGCCGGAAAAGAGCTGT
CCAGAAATGGAGCCTGGGGC

Downstream 100 bases:

>100_bases
GTATGCACCCTTTTATCGAAGGCGAGTTTGCAAAAAAATTTCTCACTGGCGATACCTATGCAAGCCAGGAAACACACACA
GGTTTTTTCACCCGTCTGAT

Product: recombination factor protein RarA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 407; Mature: 406

Protein sequence:

>407_residues
MSVSKPLPERMRPDDLALFLGQTHLGSRLRSLMQAKRLPSLLFFGPPGCGKSTLALLLAKGTGKTFLRLSAPEAGLQHLR
RSLSGIEILVLDELHRFSKAQQDFFLPLVESGDLTLLATTTENPSFSVTRQLLSRLHVLRLRPLGRTELVELARRGAMDL
QVEMPDELAELLAGVAHGDARTLLNLVEYVAALPSDLREIEHIKAALPEVLVRHDKDGDNHYELASALIKSIRGSDVDAA
LYYLACLLEGGEDPRFICRRLILSASEDVGLADPNALQLAVACQQAVEFVGMPEGFIPLAETVTYLALARKSNATYAAYL
NAQREIKLNGSHPVPLHLRNPSTQMHKEWGYGKEYKYPHNYPDSWIQQTYLPQELEGRRFYQPRDNGEEPRLTQWWRRLH
KIKKTEE

Sequences:

>Translated_407_residues
MSVSKPLPERMRPDDLALFLGQTHLGSRLRSLMQAKRLPSLLFFGPPGCGKSTLALLLAKGTGKTFLRLSAPEAGLQHLR
RSLSGIEILVLDELHRFSKAQQDFFLPLVESGDLTLLATTTENPSFSVTRQLLSRLHVLRLRPLGRTELVELARRGAMDL
QVEMPDELAELLAGVAHGDARTLLNLVEYVAALPSDLREIEHIKAALPEVLVRHDKDGDNHYELASALIKSIRGSDVDAA
LYYLACLLEGGEDPRFICRRLILSASEDVGLADPNALQLAVACQQAVEFVGMPEGFIPLAETVTYLALARKSNATYAAYL
NAQREIKLNGSHPVPLHLRNPSTQMHKEWGYGKEYKYPHNYPDSWIQQTYLPQELEGRRFYQPRDNGEEPRLTQWWRRLH
KIKKTEE
>Mature_406_residues
SVSKPLPERMRPDDLALFLGQTHLGSRLRSLMQAKRLPSLLFFGPPGCGKSTLALLLAKGTGKTFLRLSAPEAGLQHLRR
SLSGIEILVLDELHRFSKAQQDFFLPLVESGDLTLLATTTENPSFSVTRQLLSRLHVLRLRPLGRTELVELARRGAMDLQ
VEMPDELAELLAGVAHGDARTLLNLVEYVAALPSDLREIEHIKAALPEVLVRHDKDGDNHYELASALIKSIRGSDVDAAL
YYLACLLEGGEDPRFICRRLILSASEDVGLADPNALQLAVACQQAVEFVGMPEGFIPLAETVTYLALARKSNATYAAYLN
AQREIKLNGSHPVPLHLRNPSTQMHKEWGYGKEYKYPHNYPDSWIQQTYLPQELEGRRFYQPRDNGEEPRLTQWWRRLHK
IKKTEE

Specific function: Unknown

COG id: COG2256

COG function: function code L; ATPase related to the helicase subunit of the Holliday junction resolvase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rarA family [H]

Homologues:

Organism=Homo sapiens, GI18426902, Length=444, Percent_Identity=39.1891891891892, Blast_Score=273, Evalue=2e-73,
Organism=Homo sapiens, GI18426904, Length=416, Percent_Identity=36.2980769230769, Blast_Score=227, Evalue=1e-59,
Organism=Escherichia coli, GI1787119, Length=420, Percent_Identity=38.8095238095238, Blast_Score=277, Evalue=9e-76,
Organism=Saccharomyces cerevisiae, GI6324111, Length=424, Percent_Identity=37.0283018867925, Blast_Score=243, Evalue=4e-65,
Organism=Saccharomyces cerevisiae, GI6324039, Length=265, Percent_Identity=26.4150943396226, Blast_Score=68, Evalue=3e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR003959
- InterPro:   IPR021886 [H]

Pfam domain/function: PF00004 AAA; PF12002 MgsA_C [H]

EC number: NA

Molecular weight: Translated: 45766; Mature: 45635

Theoretical pI: Translated: 7.42; Mature: 7.42

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSVSKPLPERMRPDDLALFLGQTHLGSRLRSLMQAKRLPSLLFFGPPGCGKSTLALLLAK
CCCCCCCCHHCCCCHHHHHHCCHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHCC
GTGKTFLRLSAPEAGLQHLRRSLSGIEILVLDELHRFSKAQQDFFLPLVESGDLTLLATT
CCCCEEEEECCCHHHHHHHHHHHCCCEEEEHHHHHHHHHHHHHHCCEEECCCCEEEEEEC
TENPSFSVTRQLLSRLHVLRLRPLGRTELVELARRGAMDLQVEMPDELAELLAGVAHGDA
CCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCEEEEECCHHHHHHHHHHCCCHH
RTLLNLVEYVAALPSDLREIEHIKAALPEVLVRHDKDGDNHYELASALIKSIRGSDVDAA
HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCHHHH
LYYLACLLEGGEDPRFICRRLILSASEDVGLADPNALQLAVACQQAVEFVGMPEGFIPLA
HHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHH
ETVTYLALARKSNATYAAYLNAQREIKLNGSHPVPLHLRNPSTQMHKEWGYGKEYKYPHN
HHHHHHHHHHCCCCEEEEEECCCEEEEECCCCCCEEEECCCCHHHHHHCCCCCCCCCCCC
YPDSWIQQTYLPQELEGRRFYQPRDNGEEPRLTQWWRRLHKIKKTEE
CCHHHHHHHCCCHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
SVSKPLPERMRPDDLALFLGQTHLGSRLRSLMQAKRLPSLLFFGPPGCGKSTLALLLAK
CCCCCCCHHCCCCHHHHHHCCHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHCC
GTGKTFLRLSAPEAGLQHLRRSLSGIEILVLDELHRFSKAQQDFFLPLVESGDLTLLATT
CCCCEEEEECCCHHHHHHHHHHHCCCEEEEHHHHHHHHHHHHHHCCEEECCCCEEEEEEC
TENPSFSVTRQLLSRLHVLRLRPLGRTELVELARRGAMDLQVEMPDELAELLAGVAHGDA
CCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCEEEEECCHHHHHHHHHHCCCHH
RTLLNLVEYVAALPSDLREIEHIKAALPEVLVRHDKDGDNHYELASALIKSIRGSDVDAA
HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCHHHH
LYYLACLLEGGEDPRFICRRLILSASEDVGLADPNALQLAVACQQAVEFVGMPEGFIPLA
HHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHH
ETVTYLALARKSNATYAAYLNAQREIKLNGSHPVPLHLRNPSTQMHKEWGYGKEYKYPHN
HHHHHHHHHHCCCCEEEEEECCCEEEEECCCCCCEEEECCCCHHHHHHCCCCCCCCCCCC
YPDSWIQQTYLPQELEGRRFYQPRDNGEEPRLTQWWRRLHKIKKTEE
CCHHHHHHHCCCHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 12704232 [H]