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The map label for this gene is yrbE [C]

Identifier: 220904331

GI number: 220904331

Start: 1238606

End: 1239733

Strand: Reverse

Name: yrbE [C]

Synonym: Ddes_1058

Alternate gene names: 220904331

Gene position: 1239733-1238606 (Counterclockwise)

Preceding gene: 220904333

Following gene: 220904330

Centisome position: 43.14

GC content: 59.84

Gene sequence:

>1128_bases
ATGGAAACAAGTCCGCAAGTGACAGCTTCCATTCAGGGGCCGCTTCTGCGCGTCAGCGTTGGTGGCAGCTGGAATATCGA
TAGGGCCTGGCCCCCTGAAGCCAGAACCGCCCTGGAAAGCCTGACAGACCAGAGCATCCGCGAAGTTCGCCTTGAAAGCG
ACAATCTCGGCGTCTGGGACAGCAGCCTGCTCGTTTTTCTTGTGCAGTTGGTGCAAACAGCCAATGAACGCAAGGCAAAC
CTGCACACCAGCCTGCCCGACGGCCTGGAACGCCTGCTCAAGCTCGCCTTTGCCGTGCCCGCCAAGGCCGGTTCAGACCG
TAAAAAAGAAGAACTCAATTTCGTGCAGCGCGTGGGTCAGGTCGCCATTGATCTGCCGCCGCGCGTGACCGACTTTCTGA
ACTTTGTGGGCGATGTAACCCTGGCTGTGGGCCGCCTGTTTGTAGGGCGCACCCAGATGCGCCCGCAAGACCTGCTGGCA
GCCATGCAGGAGTGCGGGGTGCAGGCGCTGCCTATCATCTCCATAACCAGCATGCTCTTCGGCCTTATTCTGGCCTTTGT
AGGCGCTGTGCAGCTTACCCAGTTCGGCGCGCAGATCTACGTGGCCGGCCTTGTAGGCATAGGCATGCTGCGTGTCATGG
GCGCTGTTATGGTGGGTGTGGTCATGGCAGGCCGCGTAGGTGCGGCTTATGCCGCCCTTATCGGCACCATGCAGGTCAAT
GAAGAGGTGGACGCCCTTGCCACCCTCGGCATAGCCCCGGTGGATTTTCTTGTTCTGCCCCGCGTGGTGGCCCTGACTGC
CATGATCCCCCTGCTCACGCTCTACGCCGACCTCATGGGCGTGGTGGGCGGCTATATTGTGGCCACAACCATGCTGAACA
TCAATCCGATGGAATACATCAACGCCACCATGCAGATGGTTCCCTACAAACACGTCTTTATCGGCCTTGCCTACGGCACG
GTTTTCGGCGTCATCATCGCCATGACGGGCTGCTATCAGGGAATGCGCTGCGGGCGCAGTGCCCAGGCCGTGGGCCTTGC
AACCACAACCGCCGTGGTGCACGCCATTGTGGGCATTATCGTAGCCACTGCGGTCATAACCGTCATCTGCAACGTGCTGG
ACATCTGA

Upstream 100 bases:

>100_bases
TTAAAGACATGGCTAACCGTATTCTTTTGAGTGTGGCAAGTCCGCGAGTTTGCCCGGAACGGCTCTTGCGGATAAATAAA
GCTATGCGTATACTATAGTG

Downstream 100 bases:

>100_bases
CATGGCCGAAAAGAACACCATAGCAGAAATCACGCCCGAAAAAAATTCCGTGGGCGCGAGTTCTTCCGCAAGCCGCCAGC
CAGGCATGCCGGACGGCTCC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 375; Mature: 375

Protein sequence:

>375_residues
METSPQVTASIQGPLLRVSVGGSWNIDRAWPPEARTALESLTDQSIREVRLESDNLGVWDSSLLVFLVQLVQTANERKAN
LHTSLPDGLERLLKLAFAVPAKAGSDRKKEELNFVQRVGQVAIDLPPRVTDFLNFVGDVTLAVGRLFVGRTQMRPQDLLA
AMQECGVQALPIISITSMLFGLILAFVGAVQLTQFGAQIYVAGLVGIGMLRVMGAVMVGVVMAGRVGAAYAALIGTMQVN
EEVDALATLGIAPVDFLVLPRVVALTAMIPLLTLYADLMGVVGGYIVATTMLNINPMEYINATMQMVPYKHVFIGLAYGT
VFGVIIAMTGCYQGMRCGRSAQAVGLATTTAVVHAIVGIIVATAVITVICNVLDI

Sequences:

>Translated_375_residues
METSPQVTASIQGPLLRVSVGGSWNIDRAWPPEARTALESLTDQSIREVRLESDNLGVWDSSLLVFLVQLVQTANERKAN
LHTSLPDGLERLLKLAFAVPAKAGSDRKKEELNFVQRVGQVAIDLPPRVTDFLNFVGDVTLAVGRLFVGRTQMRPQDLLA
AMQECGVQALPIISITSMLFGLILAFVGAVQLTQFGAQIYVAGLVGIGMLRVMGAVMVGVVMAGRVGAAYAALIGTMQVN
EEVDALATLGIAPVDFLVLPRVVALTAMIPLLTLYADLMGVVGGYIVATTMLNINPMEYINATMQMVPYKHVFIGLAYGT
VFGVIIAMTGCYQGMRCGRSAQAVGLATTTAVVHAIVGIIVATAVITVICNVLDI
>Mature_375_residues
METSPQVTASIQGPLLRVSVGGSWNIDRAWPPEARTALESLTDQSIREVRLESDNLGVWDSSLLVFLVQLVQTANERKAN
LHTSLPDGLERLLKLAFAVPAKAGSDRKKEELNFVQRVGQVAIDLPPRVTDFLNFVGDVTLAVGRLFVGRTQMRPQDLLA
AMQECGVQALPIISITSMLFGLILAFVGAVQLTQFGAQIYVAGLVGIGMLRVMGAVMVGVVMAGRVGAAYAALIGTMQVN
EEVDALATLGIAPVDFLVLPRVVALTAMIPLLTLYADLMGVVGGYIVATTMLNINPMEYINATMQMVPYKHVFIGLAYGT
VFGVIIAMTGCYQGMRCGRSAQAVGLATTTAVVHAIVGIIVATAVITVICNVLDI

Specific function: Could be part of an ABC transporter complex [H]

COG id: COG0767

COG function: function code Q; ABC-type transport system involved in resistance to organic solvents, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the mlaE permease family [H]

Homologues:

Organism=Escherichia coli, GI1789585, Length=225, Percent_Identity=25.3333333333333, Blast_Score=82, Evalue=6e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003453 [H]

Pfam domain/function: PF02405 DUF140 [H]

EC number: NA

Molecular weight: Translated: 39929; Mature: 39929

Theoretical pI: Translated: 5.76; Mature: 5.76

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
4.5 %Met     (Translated Protein)
5.6 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
4.5 %Met     (Mature Protein)
5.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
METSPQVTASIQGPLLRVSVGGSWNIDRAWPPEARTALESLTDQSIREVRLESDNLGVWD
CCCCCCEEEEECCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCH
SSLLVFLVQLVQTANERKANLHTSLPDGLERLLKLAFAVPAKAGSDRKKEELNFVQRVGQ
HHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHH
VAIDLPPRVTDFLNFVGDVTLAVGRLFVGRTQMRPQDLLAAMQECGVQALPIISITSMLF
HHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHH
GLILAFVGAVQLTQFGAQIYVAGLVGIGMLRVMGAVMVGVVMAGRVGAAYAALIGTMQVN
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EEVDALATLGIAPVDFLVLPRVVALTAMIPLLTLYADLMGVVGGYIVATTMLNINPMEYI
HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH
NATMQMVPYKHVFIGLAYGTVFGVIIAMTGCYQGMRCGRSAQAVGLATTTAVVHAIVGII
HHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHH
VATAVITVICNVLDI
HHHHHHHHHHHHHCC
>Mature Secondary Structure
METSPQVTASIQGPLLRVSVGGSWNIDRAWPPEARTALESLTDQSIREVRLESDNLGVWD
CCCCCCEEEEECCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCH
SSLLVFLVQLVQTANERKANLHTSLPDGLERLLKLAFAVPAKAGSDRKKEELNFVQRVGQ
HHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHH
VAIDLPPRVTDFLNFVGDVTLAVGRLFVGRTQMRPQDLLAAMQECGVQALPIISITSMLF
HHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHH
GLILAFVGAVQLTQFGAQIYVAGLVGIGMLRVMGAVMVGVVMAGRVGAAYAALIGTMQVN
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EEVDALATLGIAPVDFLVLPRVVALTAMIPLLTLYADLMGVVGGYIVATTMLNINPMEYI
HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH
NATMQMVPYKHVFIGLAYGTVFGVIIAMTGCYQGMRCGRSAQAVGLATTTAVVHAIVGII
HHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHH
VATAVITVICNVLDI
HHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA