Click here to switch to the map view.

The map label for this gene is ydiK [C]

Identifier: 220904315

GI number: 220904315

Start: 1219506

End: 1220612

Strand: Reverse

Name: ydiK [C]

Synonym: Ddes_1042

Alternate gene names: 220904315

Gene position: 1220612-1219506 (Counterclockwise)

Preceding gene: 220904317

Following gene: 220904314

Centisome position: 42.48

GC content: 57.18

Gene sequence:

>1107_bases
ATGACACAAACAATGCCCCGCTTGCTCTACCTGCTGGCCGTACTGGCCTGGTATCTGCTGCTGCTGCCCAATCCCGTCAC
AATCTTTATGGCGGCCTGTCTGTCTTGCCTCACCCTGCCGCAGTACCGCAAACTGCGGCAAAAAGCCCGGGCCTGGCGAA
TCCGCATTGAACGCAGCCGGCCGGATTCACGCAAGCGACGCCTTCTCATCTCCTTTGTCAATTCATCGCCGCTTTACGGA
TATATCACCATGCTGATAGCGGCCCTTATCGTTCCCATTGCCGTGCTGGTTCTTCTGGTATCGCCGCAGGCAGCAGCCGG
TTTTACGCGGCTGCGTGAACTGCAGGCCAATAATTTTCAGTTGCCCGTTGAGTGGGTAAACTACATCCAGCAATGGAGGC
AGAGCCTTACAGAGCATCCGCGCCTTGAGCGCGCCTTCAATGATCTGCTCATGCGGCTGGACAGCTTTTTTGATACTGCC
ATGGGTCTGCTGCTGTCGCGCGGCGTAGATTTCCTTGGGGGCACCATGACCGTGCTCTGGACCAGCTTTCTCTTTGTAAG
CCTGACAGTGATATTTACCATCTATTCCCGCCGTGTACGCAAGATCACGGGCAGGATATTCCATATTTCCCAGTCCATGC
TGCGGCGCTTCATCACGGCCATACACCGGGCGCTGCGCGGCATCATGCTGGGCATTGTTCTGGTAGCGCTGGCCCAGGGC
TTTCTGTGCGGCGTCGCCTTTGCTGTGGCAGGCGTCAACCAGCCTGCCTTCTGGGGATTACTGGCGACACTGGTAGCCCC
TATCCCCATGGTGGGCACAGCTCTTGTATGGCTGCCCCTGTGCATTTCGCTCTGGTTTACCGGCAAAAGCATGGCCGCCA
TAGGGTTGGGACTGTGGGGAATGCTGGCCGTAGCGGGTGTGGACAACGTACTGCGTCCTCTTTTTCTGCGGCAGGGTATC
AAGGCCCCTTTCTTTGTGCTGATTATCGCCATCCTCTGTGGACTTTCCAGCTTTGGCCCGGTGGGGCTTATTGCCGGTCC
CGTGCTGCTGGCCTTTGCCATGCAGGCTGTGGAGGAAGCAAACCGTATCTACAAGTACAATGCCTGA

Upstream 100 bases:

>100_bases
GCAGCCACGGGCTATCGTACAGGCACAGTCCGCGCCGTGGGCTGTATCCGCCACATCAACCGCATCCAGAATTTTGGGGC
ACGCAACCCAAGGCTTATGC

Downstream 100 bases:

>100_bases
CAAAGTATAATGGTTAAAAAAGATTCTCACGCCACACTTACGGCAGAGGAAGAGCCTTGCCGCCTCAAGGACAGCTGCGG
ACAACGCCGTACGGAAAACA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 368; Mature: 367

Protein sequence:

>368_residues
MTQTMPRLLYLLAVLAWYLLLLPNPVTIFMAACLSCLTLPQYRKLRQKARAWRIRIERSRPDSRKRRLLISFVNSSPLYG
YITMLIAALIVPIAVLVLLVSPQAAAGFTRLRELQANNFQLPVEWVNYIQQWRQSLTEHPRLERAFNDLLMRLDSFFDTA
MGLLLSRGVDFLGGTMTVLWTSFLFVSLTVIFTIYSRRVRKITGRIFHISQSMLRRFITAIHRALRGIMLGIVLVALAQG
FLCGVAFAVAGVNQPAFWGLLATLVAPIPMVGTALVWLPLCISLWFTGKSMAAIGLGLWGMLAVAGVDNVLRPLFLRQGI
KAPFFVLIIAILCGLSSFGPVGLIAGPVLLAFAMQAVEEANRIYKYNA

Sequences:

>Translated_368_residues
MTQTMPRLLYLLAVLAWYLLLLPNPVTIFMAACLSCLTLPQYRKLRQKARAWRIRIERSRPDSRKRRLLISFVNSSPLYG
YITMLIAALIVPIAVLVLLVSPQAAAGFTRLRELQANNFQLPVEWVNYIQQWRQSLTEHPRLERAFNDLLMRLDSFFDTA
MGLLLSRGVDFLGGTMTVLWTSFLFVSLTVIFTIYSRRVRKITGRIFHISQSMLRRFITAIHRALRGIMLGIVLVALAQG
FLCGVAFAVAGVNQPAFWGLLATLVAPIPMVGTALVWLPLCISLWFTGKSMAAIGLGLWGMLAVAGVDNVLRPLFLRQGI
KAPFFVLIIAILCGLSSFGPVGLIAGPVLLAFAMQAVEEANRIYKYNA
>Mature_367_residues
TQTMPRLLYLLAVLAWYLLLLPNPVTIFMAACLSCLTLPQYRKLRQKARAWRIRIERSRPDSRKRRLLISFVNSSPLYGY
ITMLIAALIVPIAVLVLLVSPQAAAGFTRLRELQANNFQLPVEWVNYIQQWRQSLTEHPRLERAFNDLLMRLDSFFDTAM
GLLLSRGVDFLGGTMTVLWTSFLFVSLTVIFTIYSRRVRKITGRIFHISQSMLRRFITAIHRALRGIMLGIVLVALAQGF
LCGVAFAVAGVNQPAFWGLLATLVAPIPMVGTALVWLPLCISLWFTGKSMAAIGLGLWGMLAVAGVDNVLRPLFLRQGIK
APFFVLIIAILCGLSSFGPVGLIAGPVLLAFAMQAVEEANRIYKYNA

Specific function: Unknown

COG id: COG0628

COG function: function code R; Predicted permease

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0118 (perM) family [H]

Homologues:

Organism=Escherichia coli, GI1787979, Length=136, Percent_Identity=33.8235294117647, Blast_Score=69, Evalue=7e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002549 [H]

Pfam domain/function: PF01594 UPF0118 [H]

EC number: NA

Molecular weight: Translated: 41115; Mature: 40984

Theoretical pI: Translated: 11.49; Mature: 11.49

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTQTMPRLLYLLAVLAWYLLLLPNPVTIFMAACLSCLTLPQYRKLRQKARAWRIRIERSR
CCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCC
PDSRKRRLLISFVNSSPLYGYITMLIAALIVPIAVLVLLVSPQAAAGFTRLRELQANNFQ
CCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCC
LPVEWVNYIQQWRQSLTEHPRLERAFNDLLMRLDSFFDTAMGLLLSRGVDFLGGTMTVLW
CCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHCHHHHHHH
TSFLFVSLTVIFTIYSRRVRKITGRIFHISQSMLRRFITAIHRALRGIMLGIVLVALAQG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FLCGVAFAVAGVNQPAFWGLLATLVAPIPMVGTALVWLPLCISLWFTGKSMAAIGLGLWG
HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
MLAVAGVDNVLRPLFLRQGIKAPFFVLIIAILCGLSSFGPVGLIAGPVLLAFAMQAVEEA
HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHH
NRIYKYNA
HHHHCCCC
>Mature Secondary Structure 
TQTMPRLLYLLAVLAWYLLLLPNPVTIFMAACLSCLTLPQYRKLRQKARAWRIRIERSR
CCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCC
PDSRKRRLLISFVNSSPLYGYITMLIAALIVPIAVLVLLVSPQAAAGFTRLRELQANNFQ
CCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCC
LPVEWVNYIQQWRQSLTEHPRLERAFNDLLMRLDSFFDTAMGLLLSRGVDFLGGTMTVLW
CCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHCHHHHHHH
TSFLFVSLTVIFTIYSRRVRKITGRIFHISQSMLRRFITAIHRALRGIMLGIVLVALAQG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FLCGVAFAVAGVNQPAFWGLLATLVAPIPMVGTALVWLPLCISLWFTGKSMAAIGLGLWG
HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
MLAVAGVDNVLRPLFLRQGIKAPFFVLIIAILCGLSSFGPVGLIAGPVLLAFAMQAVEEA
HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHH
NRIYKYNA
HHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9537320 [H]