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The map label for this gene is ycxD [H]

Identifier: 21910386

GI number: 21910386

Start: 905653

End: 906921

Strand: Direct

Name: ycxD [H]

Synonym: SpyM3_0850

Alternate gene names: 21910386

Gene position: 905653-906921 (Clockwise)

Preceding gene: 21910381

Following gene: 21910397

Centisome position: 47.65

GC content: 33.49

Gene sequence:

>1269_bases
ATGACAACAAAATATCAAACAATCATTTCCAATATCGAACAAGATATCCAGAAACAGCGACTAAAAAAAGGGGACAAGCT
ACCTTCAATTAGGGTATTAAGTAAGGTTTATCATTGTAGCAAAGATACTGTTCAGCGGGCTCTTTTAGAATTAAAATATC
GTCACTTAATTTATGCTGTTCCTAAAAGTGGTTATTATGTTTTGGGTAACGTAAGCATGCCCGATAATGTTCTTAATCTA
AGTCTTGAAGATTATAATAATATGGCTTATGAAGATTTCCGACTCTGCTTAAATGAGGCTTTAAGTGCTAAAGACAAATA
CCTCTTTCATTATTATCACAAAACCGAAGGACTAGAAGAACTAAGGGAAGCTTTGCTTCTTTACTTAGCTGAAAATAGTG
TTTACAGTAACAAAGACCAACTATTAATCACCTCTGGGACGCAACAAGCGCTTTATATTTTATCACAAATGCCTTTTCCT
AATGCGGGCAAAACAATTCTCCTTGAAAAGCCTACTTATCATCGGATGGAAGCTATTGTTGCTCAGTTAGGATTACCCTA
TCAAACTATCTCTAGACACTTTAATGGCCTTGATTTAGAACTCTTAGAATCTTTATTTCAAACTGGCGATATTAAATTTT
TTTACACGATTTCACGATTTTCACATCCTCTGGGACTTTCTTATAGTACTAAGGAAAAGGAAGCTATTGTTCGTCTAGCA
CAACGATACCAGGTTTATATTTTAGAAGATGATTATTTAGGAGATTTTGTGAAACTTAAAGAGCCACCAATTCATTATTA
TGACACTCATCACCGAATCATCTACCTAAAATCTTTTTCAATGAGTGTTTTTCCTGCACTCCGTATCGGAGCTCTAGTTT
TACCGTCAGGTTTAAAACCTCATTTTTTAACCCAAAAATCACTGATTGATTTAGACACGAACTTACTAATGCAAAAAGCA
TTAGCTCTTTATTTAGAAAATGGGATGTTTCAAAAAAATCTTCGCTTTATTAAGCGTTATCTAAAACAGCGGGAACGTCA
ATTGGCTCTCTTTTTAAAACAAAATTGCCCTGATATTCACTATCAACTAACCCCTACTCATTTAGTGATTGATTACACGA
CATCAGACTCTTATAGAAACTTTACATTAGATAAATCTGATAGAATAATAATAACTGGAAAAAAACGCTATCTCTCTATT
GCTATCAATCAACAAATACAAAGCAAATTAAACTCGCTAATCAAAAATACTTGTGGAAAGAGCAACTAA

Upstream 100 bases:

>100_bases
ATCCGTTTCATAGCTATTACCTCTTTTCTATAATAACTATTGTAAGAAAAAGAGGCATAAGATACAATAGTTATAACACT
TAACTGTATGGGGACAATTT

Downstream 100 bases:

>100_bases
CTTTTCTTCGTACCATTAATATAAAAAATGGGGATAAATAAGTATTATAAAATCTCTAATTGGATAGTTGCCCCAATCTT
CAATGCCTGGATAAAAAATC

Product: hypothetical protein

Products: NA

Alternate protein names: ORF8 [H]

Number of amino acids: Translated: 422; Mature: 421

Protein sequence:

>422_residues
MTTKYQTIISNIEQDIQKQRLKKGDKLPSIRVLSKVYHCSKDTVQRALLELKYRHLIYAVPKSGYYVLGNVSMPDNVLNL
SLEDYNNMAYEDFRLCLNEALSAKDKYLFHYYHKTEGLEELREALLLYLAENSVYSNKDQLLITSGTQQALYILSQMPFP
NAGKTILLEKPTYHRMEAIVAQLGLPYQTISRHFNGLDLELLESLFQTGDIKFFYTISRFSHPLGLSYSTKEKEAIVRLA
QRYQVYILEDDYLGDFVKLKEPPIHYYDTHHRIIYLKSFSMSVFPALRIGALVLPSGLKPHFLTQKSLIDLDTNLLMQKA
LALYLENGMFQKNLRFIKRYLKQRERQLALFLKQNCPDIHYQLTPTHLVIDYTTSDSYRNFTLDKSDRIIITGKKRYLSI
AINQQIQSKLNSLIKNTCGKSN

Sequences:

>Translated_422_residues
MTTKYQTIISNIEQDIQKQRLKKGDKLPSIRVLSKVYHCSKDTVQRALLELKYRHLIYAVPKSGYYVLGNVSMPDNVLNL
SLEDYNNMAYEDFRLCLNEALSAKDKYLFHYYHKTEGLEELREALLLYLAENSVYSNKDQLLITSGTQQALYILSQMPFP
NAGKTILLEKPTYHRMEAIVAQLGLPYQTISRHFNGLDLELLESLFQTGDIKFFYTISRFSHPLGLSYSTKEKEAIVRLA
QRYQVYILEDDYLGDFVKLKEPPIHYYDTHHRIIYLKSFSMSVFPALRIGALVLPSGLKPHFLTQKSLIDLDTNLLMQKA
LALYLENGMFQKNLRFIKRYLKQRERQLALFLKQNCPDIHYQLTPTHLVIDYTTSDSYRNFTLDKSDRIIITGKKRYLSI
AINQQIQSKLNSLIKNTCGKSN
>Mature_421_residues
TTKYQTIISNIEQDIQKQRLKKGDKLPSIRVLSKVYHCSKDTVQRALLELKYRHLIYAVPKSGYYVLGNVSMPDNVLNLS
LEDYNNMAYEDFRLCLNEALSAKDKYLFHYYHKTEGLEELREALLLYLAENSVYSNKDQLLITSGTQQALYILSQMPFPN
AGKTILLEKPTYHRMEAIVAQLGLPYQTISRHFNGLDLELLESLFQTGDIKFFYTISRFSHPLGLSYSTKEKEAIVRLAQ
RYQVYILEDDYLGDFVKLKEPPIHYYDTHHRIIYLKSFSMSVFPALRIGALVLPSGLKPHFLTQKSLIDLDTNLLMQKAL
ALYLENGMFQKNLRFIKRYLKQRERQLALFLKQNCPDIHYQLTPTHLVIDYTTSDSYRNFTLDKSDRIIITGKKRYLSIA
INQQIQSKLNSLIKNTCGKSN

Specific function: Unknown

COG id: COG1167

COG function: function code KE; Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Homo sapiens, GI7705897, Length=226, Percent_Identity=28.7610619469027, Blast_Score=72, Evalue=9e-13,
Organism=Homo sapiens, GI33469970, Length=226, Percent_Identity=28.7610619469027, Blast_Score=72, Evalue=9e-13,
Organism=Escherichia coli, GI1790797, Length=384, Percent_Identity=25.2604166666667, Blast_Score=111, Evalue=1e-25,
Organism=Escherichia coli, GI1787710, Length=378, Percent_Identity=25.9259259259259, Blast_Score=104, Evalue=1e-23,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004839
- InterPro:   IPR000524
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00155 Aminotran_1_2; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 49134; Mature: 49002

Theoretical pI: Translated: 9.55; Mature: 9.55

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTTKYQTIISNIEQDIQKQRLKKGDKLPSIRVLSKVYHCSKDTVQRALLELKYRHLIYAV
CCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHEEEEE
PKSGYYVLGNVSMPDNVLNLSLEDYNNMAYEDFRLCLNEALSAKDKYLFHYYHKTEGLEE
CCCCEEEEECCCCCCHHEEEEHHHCCCCHHHHHHHHHHHHHCCCCCEEEEEEHHHCCHHH
LREALLLYLAENSVYSNKDQLLITSGTQQALYILSQMPFPNAGKTILLEKPTYHRMEAIV
HHHHHHHHHHCCCCCCCCCCEEEECCCHHHHHHHHCCCCCCCCCEEEEECCCHHHHHHHH
AQLGLPYQTISRHFNGLDLELLESLFQTGDIKFFYTISRFSHPLGLSYSTKEKEAIVRLA
HHHCCCHHHHHHHCCCCCHHHHHHHHHCCCEEEEEEEHHCCCCCCCCCCCHHHHHHHHHH
QRYQVYILEDDYLGDFVKLKEPPIHYYDTHHRIIYLKSFSMSVFPALRIGALVLPSGLKP
HHEEEEEEECCCCCCEEECCCCCCCEECCCCEEEEEEECCCHHHHHHHHHHEECCCCCCC
HFLTQKSLIDLDTNLLMQKALALYLENGMFQKNLRFIKRYLKQRERQLALFLKQNCPDIH
CCCCHHHHHHCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCE
YQLTPTHLVIDYTTSDSYRNFTLDKSDRIIITGKKRYLSIAINQQIQSKLNSLIKNTCGK
EEECCEEEEEEEECCCCCCEEEECCCCEEEEEECCEEEEEEECHHHHHHHHHHHHHHCCC
SN
CC
>Mature Secondary Structure 
TTKYQTIISNIEQDIQKQRLKKGDKLPSIRVLSKVYHCSKDTVQRALLELKYRHLIYAV
CCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHEEEEE
PKSGYYVLGNVSMPDNVLNLSLEDYNNMAYEDFRLCLNEALSAKDKYLFHYYHKTEGLEE
CCCCEEEEECCCCCCHHEEEEHHHCCCCHHHHHHHHHHHHHCCCCCEEEEEEHHHCCHHH
LREALLLYLAENSVYSNKDQLLITSGTQQALYILSQMPFPNAGKTILLEKPTYHRMEAIV
HHHHHHHHHHCCCCCCCCCCEEEECCCHHHHHHHHCCCCCCCCCEEEEECCCHHHHHHHH
AQLGLPYQTISRHFNGLDLELLESLFQTGDIKFFYTISRFSHPLGLSYSTKEKEAIVRLA
HHHCCCHHHHHHHCCCCCHHHHHHHHHCCCEEEEEEEHHCCCCCCCCCCCHHHHHHHHHH
QRYQVYILEDDYLGDFVKLKEPPIHYYDTHHRIIYLKSFSMSVFPALRIGALVLPSGLKP
HHEEEEEEECCCCCCEEECCCCCCCEECCCCEEEEEEECCCHHHHHHHHHHEECCCCCCC
HFLTQKSLIDLDTNLLMQKALALYLENGMFQKNLRFIKRYLKQRERQLALFLKQNCPDIH
CCCCHHHHHHCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCE
YQLTPTHLVIDYTTSDSYRNFTLDKSDRIIITGKKRYLSIAINQQIQSKLNSLIKNTCGK
EEECCEEEEEEEECCCCCCEEEECCCCEEEEEECCEEEEEEECHHHHHHHHHHHHHHCCC
SN
CC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8355609; 8969502; 9384377 [H]