Click here to switch to the map view.

The map label for this gene is yidA [C]

Identifier: 21909972

GI number: 21909972

Start: 478979

End: 479788

Strand: Reverse

Name: yidA [C]

Synonym: SpyM3_0436

Alternate gene names: 21909972

Gene position: 479788-478979 (Counterclockwise)

Preceding gene: 21909973

Following gene: 21909971

Centisome position: 25.25

GC content: 40.74

Gene sequence:

>810_bases
ATGTCTATCAAACTGGTTGCTGTCGATATTGATGGCACATTACTCACTGATGATCGTCGAATTACAGATGATGTTTTTCA
AGCTGTCCAAGAGGCTAAAGCCCAAGGTGTTCATGTGGTGATTGCTACTGGCAGACCTATTGCCGGAGTGATTTCATTAC
TCGAACAATTAGAACTCAACCACAAAGGAAACCACGTTATCACTTTTAATGGTGGCTTGGTGCAAGATGCCGAGACCGGC
GAAGAAATTGTTAAAGAATTGATGACTTACGACGATTATCTGGAAACGGAATTTTTGAGCCGAAAATTAGGAGTTCACAT
GCATGCCATTACCAAAGAAGGTATTTACACTGCCAATCGGAATATTGGAAAATACACAGTTCATGAATCGACTTTGGTAA
ACATGCCTATTTTCTATCGCACTCCCGAAGAAATGACCAATAAAGAAATCATCAAAATGATGATGATTGATGAACCTGAC
CTTTTGGACGCGGCCATCAAGCAAATTCCTCAACATTTCTTTGATAAGTACACCATCGTCAAGTCAACCCCTTTTTATTT
AGAGTTCATGCCAAAAACCGTCAGCAAGGGCAATGCCATCAAATACTTAGCTAAAAAACTCGGGCTAGATATGTCACAAA
CCATGGCCATCGGGGATGCTGAAAATGATCGTGCTATGTTAGAAGTCGTTGCCAACCCTGTTGTCATGGAAAATGGGGTT
CCTGAATTGAAAAAAATAGCCAAATACATCACCAAATCCAACAATGACAGTGGTGTGGCACATGCTATTCGCAAGTGGGT
ATTAAACTAA

Upstream 100 bases:

>100_bases
CTTAAGTTTCCTTTCCCATCCCATGACAAAAGCACCTATTTTTAGTAAGATAGGAGGGAGAACATTTTTAAGATAAACCA
CAAAAAACAAGGAGGATGCC

Downstream 100 bases:

>100_bases
TGTATACATATAAAATCGGAATATCTCCTGAAGAACATGATCAGTTTGTCTTAGCACAGCCACAAGCTGGCTTACTTCAA
AGTTCAAAGTGGGGAAAAGT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 269; Mature: 268

Protein sequence:

>269_residues
MSIKLVAVDIDGTLLTDDRRITDDVFQAVQEAKAQGVHVVIATGRPIAGVISLLEQLELNHKGNHVITFNGGLVQDAETG
EEIVKELMTYDDYLETEFLSRKLGVHMHAITKEGIYTANRNIGKYTVHESTLVNMPIFYRTPEEMTNKEIIKMMMIDEPD
LLDAAIKQIPQHFFDKYTIVKSTPFYLEFMPKTVSKGNAIKYLAKKLGLDMSQTMAIGDAENDRAMLEVVANPVVMENGV
PELKKIAKYITKSNNDSGVAHAIRKWVLN

Sequences:

>Translated_269_residues
MSIKLVAVDIDGTLLTDDRRITDDVFQAVQEAKAQGVHVVIATGRPIAGVISLLEQLELNHKGNHVITFNGGLVQDAETG
EEIVKELMTYDDYLETEFLSRKLGVHMHAITKEGIYTANRNIGKYTVHESTLVNMPIFYRTPEEMTNKEIIKMMMIDEPD
LLDAAIKQIPQHFFDKYTIVKSTPFYLEFMPKTVSKGNAIKYLAKKLGLDMSQTMAIGDAENDRAMLEVVANPVVMENGV
PELKKIAKYITKSNNDSGVAHAIRKWVLN
>Mature_268_residues
SIKLVAVDIDGTLLTDDRRITDDVFQAVQEAKAQGVHVVIATGRPIAGVISLLEQLELNHKGNHVITFNGGLVQDAETGE
EIVKELMTYDDYLETEFLSRKLGVHMHAITKEGIYTANRNIGKYTVHESTLVNMPIFYRTPEEMTNKEIIKMMMIDEPDL
LDAAIKQIPQHFFDKYTIVKSTPFYLEFMPKTVSKGNAIKYLAKKLGLDMSQTMAIGDAENDRAMLEVVANPVVMENGVP
ELKKIAKYITKSNNDSGVAHAIRKWVLN

Specific function: Catalyzes the dephosphorylation of the artificial chromogenic substrate p-nitrophenyl phosphate (pNPP) and of the natural substrates erythrose 4-phosphate and mannose 1-phosphate [H]

COG id: COG0561

COG function: function code R; Predicted hydrolases of the HAD superfamily

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the HAD-like hydrolase superfamily. Cof family [H]

Homologues:

Organism=Escherichia coli, GI2367265, Length=270, Percent_Identity=47.7777777777778, Blast_Score=264, Evalue=5e-72,
Organism=Escherichia coli, GI87081790, Length=274, Percent_Identity=28.4671532846715, Blast_Score=82, Evalue=5e-17,
Organism=Escherichia coli, GI87081741, Length=271, Percent_Identity=23.6162361623616, Blast_Score=76, Evalue=2e-15,
Organism=Escherichia coli, GI48994981, Length=288, Percent_Identity=26.0416666666667, Blast_Score=75, Evalue=4e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR023214
- InterPro:   IPR013200
- InterPro:   IPR006379
- InterPro:   IPR000150 [H]

Pfam domain/function: PF08282 Hydrolase_3 [H]

EC number: NA

Molecular weight: Translated: 30169; Mature: 30038

Theoretical pI: Translated: 5.87; Mature: 5.87

Prosite motif: PS01228 COF_1 ; PS01229 COF_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.8 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.5 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSIKLVAVDIDGTLLTDDRRITDDVFQAVQEAKAQGVHVVIATGRPIAGVISLLEQLELN
CCEEEEEEECCCEEEECCCHHHHHHHHHHHHHHHCCEEEEEECCCCHHHHHHHHHHHHCC
HKGNHVITFNGGLVQDAETGEEIVKELMTYDDYLETEFLSRKLGVHMHAITKEGIYTANR
CCCCEEEEECCCEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHEEEHHCCEEECCC
NIGKYTVHESTLVNMPIFYRTPEEMTNKEIIKMMMIDEPDLLDAAIKQIPQHFFDKYTIV
CCCEEEEECCEEECCCEEEECHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCEEEE
KSTPFYLEFMPKTVSKGNAIKYLAKKLGLDMSQTMAIGDAENDRAMLEVVANPVVMENGV
ECCCCEEEECCHHCCCCCHHHHHHHHHCCCHHHHEECCCCCCCHHHHHHHHCCEEECCCC
PELKKIAKYITKSNNDSGVAHAIRKWVLN
HHHHHHHHHHHCCCCCCHHHHHHHHHHCC
>Mature Secondary Structure 
SIKLVAVDIDGTLLTDDRRITDDVFQAVQEAKAQGVHVVIATGRPIAGVISLLEQLELN
CEEEEEEECCCEEEECCCHHHHHHHHHHHHHHHCCEEEEEECCCCHHHHHHHHHHHHCC
HKGNHVITFNGGLVQDAETGEEIVKELMTYDDYLETEFLSRKLGVHMHAITKEGIYTANR
CCCCEEEEECCCEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHEEEHHCCEEECCC
NIGKYTVHESTLVNMPIFYRTPEEMTNKEIIKMMMIDEPDLLDAAIKQIPQHFFDKYTIV
CCCEEEEECCEEECCCEEEECHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCEEEE
KSTPFYLEFMPKTVSKGNAIKYLAKKLGLDMSQTMAIGDAENDRAMLEVVANPVVMENGV
ECCCCEEEECCHHCCCCCHHHHHHHHHCCCHHHHEECCCCCCCHHHHHHHHCCEEECCCC
PELKKIAKYITKSNNDSGVAHAIRKWVLN
HHHHHHHHHHHCCCCCCHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA