Click here to switch to the map view.

The map label for this gene is sodA [H]

Identifier: 218931043

GI number: 218931043

Start: 4580167

End: 4580790

Strand: Direct

Name: sodA [H]

Synonym: YPO4061

Alternate gene names: 218931043

Gene position: 4580167-4580790 (Clockwise)

Preceding gene: 218931042

Following gene: 218931044

Centisome position: 98.42

GC content: 51.76

Gene sequence:

>624_bases
ATGAGTTATTCACTGCCATCACTGCCTTATGCTTATGATGCCTTAGAACCACACTTCGATAAGCAGACGATGGAAATCCA
TCACACCAAACACCATCAGACCTATGTTAACAATGCAAATACGGTGTTGGAGAGCTTCCCGGAGCTGGCGGACCTGAGCG
TTGAAGATCTGATCAAAGATCTGGATAAAGTCCCTGCTGAAAAGCGCACCTTTATGCGTAACAACGCAGGCGGCCACGCT
AACCACAGTCTGTTCTGGAAAGGCCTGAAACTGGGCACCACCCTAGCCGGTGACCTGAAAGCCGCTATCGAGCGCGATTT
CGGCAGCGTAGACAGCTTCAAAGAAAAATTTGAACAAGCTGCTGCGACCCGTTTCGGTTCTGGCTGGGCTTGGCTGGTAC
TGAAAGACGACGGCAAACTGGCGGTTGTTTCAACCGCTAACCAAGACAGCCCGCTGATGGGCGAAGCCGTTTCTGGCGTA
TCAGGTTTCCCGATTGTGGGCCTGGACGTATGGGAACACGCTTACTACCTGAAATTCCAAAACCGCCGCCCAGACTACAT
CAAAGCCTTCTGGAACGTGGTTAACTGGGATGAAGCTGCAGCGCGTTTCGCTCAAGCCAAGTAA

Upstream 100 bases:

>100_bases
TTGATAATCATTTTCAATATCATTTAATTAACTATAATGATCCCCATGCTTACGCGGTGCTTACTTTTTTGCACCGTCCT
ACACTATGGAGACGATGATT

Downstream 100 bases:

>100_bases
TTCGCTTATCCATAAAACGGGCCTTAAACCGCCCGTTGCATAGCCAAAGAACGTGGCGTTGCAGGTAAGCTTCAAGTACG
AAAGATACATGCCAGCAAGG

Product: superoxide dismutase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 207; Mature: 206

Protein sequence:

>207_residues
MSYSLPSLPYAYDALEPHFDKQTMEIHHTKHHQTYVNNANTVLESFPELADLSVEDLIKDLDKVPAEKRTFMRNNAGGHA
NHSLFWKGLKLGTTLAGDLKAAIERDFGSVDSFKEKFEQAAATRFGSGWAWLVLKDDGKLAVVSTANQDSPLMGEAVSGV
SGFPIVGLDVWEHAYYLKFQNRRPDYIKAFWNVVNWDEAAARFAQAK

Sequences:

>Translated_207_residues
MSYSLPSLPYAYDALEPHFDKQTMEIHHTKHHQTYVNNANTVLESFPELADLSVEDLIKDLDKVPAEKRTFMRNNAGGHA
NHSLFWKGLKLGTTLAGDLKAAIERDFGSVDSFKEKFEQAAATRFGSGWAWLVLKDDGKLAVVSTANQDSPLMGEAVSGV
SGFPIVGLDVWEHAYYLKFQNRRPDYIKAFWNVVNWDEAAARFAQAK
>Mature_206_residues
SYSLPSLPYAYDALEPHFDKQTMEIHHTKHHQTYVNNANTVLESFPELADLSVEDLIKDLDKVPAEKRTFMRNNAGGHAN
HSLFWKGLKLGTTLAGDLKAAIERDFGSVDSFKEKFEQAAATRFGSGWAWLVLKDDGKLAVVSTANQDSPLMGEAVSGVS
GFPIVGLDVWEHAYYLKFQNRRPDYIKAFWNVVNWDEAAARFAQAK

Specific function: Destroys radicals which are normally produced within the cells and which are toxic to biological systems [H]

COG id: COG0605

COG function: function code P; Superoxide dismutase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the iron/manganese superoxide dismutase family [H]

Homologues:

Organism=Homo sapiens, GI67782307, Length=208, Percent_Identity=46.6346153846154, Blast_Score=186, Evalue=1e-47,
Organism=Homo sapiens, GI67782305, Length=208, Percent_Identity=46.6346153846154, Blast_Score=186, Evalue=1e-47,
Organism=Homo sapiens, GI67782309, Length=206, Percent_Identity=39.8058252427184, Blast_Score=152, Evalue=2e-37,
Organism=Escherichia coli, GI1790342, Length=207, Percent_Identity=85.024154589372, Blast_Score=370, Evalue=1e-104,
Organism=Escherichia coli, GI1787946, Length=206, Percent_Identity=43.2038834951456, Blast_Score=166, Evalue=8e-43,
Organism=Caenorhabditis elegans, GI17506561, Length=207, Percent_Identity=43.4782608695652, Blast_Score=166, Evalue=6e-42,
Organism=Caenorhabditis elegans, GI17569479, Length=207, Percent_Identity=41.5458937198068, Blast_Score=161, Evalue=3e-40,
Organism=Saccharomyces cerevisiae, GI6321796, Length=215, Percent_Identity=43.7209302325581, Blast_Score=161, Evalue=9e-41,
Organism=Drosophila melanogaster, GI17136812, Length=207, Percent_Identity=44.9275362318841, Blast_Score=175, Evalue=2e-44,

Paralogues:

None

Copy number: 2980 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 20 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001189
- InterPro:   IPR019833
- InterPro:   IPR019832
- InterPro:   IPR019831 [H]

Pfam domain/function: PF02777 Sod_Fe_C; PF00081 Sod_Fe_N [H]

EC number: =1.15.1.1 [H]

Molecular weight: Translated: 23237; Mature: 23106

Theoretical pI: Translated: 6.31; Mature: 6.31

Prosite motif: PS00088 SOD_MN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSYSLPSLPYAYDALEPHFDKQTMEIHHTKHHQTYVNNANTVLESFPELADLSVEDLIKD
CCCCCCCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCHHHHHHH
LDKVPAEKRTFMRNNAGGHANHSLFWKGLKLGTTLAGDLKAAIERDFGSVDSFKEKFEQA
HHHCCHHHHHHHHCCCCCCCCCHHEEECHHHCCHHHHHHHHHHHHCCCCHHHHHHHHHHH
AATRFGSGWAWLVLKDDGKLAVVSTANQDSPLMGEAVSGVSGFPIVGLDVWEHAYYLKFQ
HHHHCCCCEEEEEEECCCCEEEEEECCCCCCCHHHHHCCCCCCCEEEHHHHCCEEEEEEC
NRRPDYIKAFWNVVNWDEAAARFAQAK
CCCCHHHHHHHHHCCHHHHHHHHHCCC
>Mature Secondary Structure 
SYSLPSLPYAYDALEPHFDKQTMEIHHTKHHQTYVNNANTVLESFPELADLSVEDLIKD
CCCCCCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCHHHHHHH
LDKVPAEKRTFMRNNAGGHANHSLFWKGLKLGTTLAGDLKAAIERDFGSVDSFKEKFEQA
HHHCCHHHHHHHHCCCCCCCCCHHEEECHHHCCHHHHHHHHHHHHCCCCHHHHHHHHHHH
AATRFGSGWAWLVLKDDGKLAVVSTANQDSPLMGEAVSGVSGFPIVGLDVWEHAYYLKFQ
HHHHCCCCEEEEEEECCCCEEEEEECCCCCCCHHHHHCCCCCCCEEEHHHHCCEEEEEEC
NRRPDYIKAFWNVVNWDEAAARFAQAK
CCCCHHHHHHHHHCCHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9353054 [H]