| Definition | Yersinia pestis CO92 chromosome, complete genome. |
|---|---|
| Accession | NC_003143 |
| Length | 4,653,728 |
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The map label for this gene is fimD [H]
Identifier: 218930880
GI number: 218930880
Start: 4353903
End: 4356530
Strand: Direct
Name: fimD [H]
Synonym: YPO3879
Alternate gene names: 218930880
Gene position: 4353903-4356530 (Clockwise)
Preceding gene: 218930879
Following gene: 218930881
Centisome position: 93.56
GC content: 47.11
Gene sequence:
>2628_bases ATGGTGCAGGCACGGGTCATTCTGAAAAAAAATTTCTCAGGCCGTAGGAAAGCATTAACATTATGTATAACTTTAATTTT ACATATTGATACTGCTTTTGGGCAGGAAGAACCACAAAATTTCGAATTTGATGAATCTCTTTTTTTAGGGACAAAATATG CATCAGGTTTGACCCAGCTTAATAAAAAAAATTCTATAACTGCCGGGAATTATGATGCTGTAGATGTTTTGGTTAATAAC AAATTGTTCAAACGTATGAGCGTGCAATTTATTAAAGATGCCAACTCATCTGAGGTTTATCCCTGTCTGAGCGACGAGTT ATTAACCGCGGCTGGCGTTGAACTGGGTAGAGAAAATAGCACCCCTCCCAAAGAACCCCATGTTACCGAGGCTAATACTC CCATAACTGAAACTCACGCCCCAACGAACCAATGTTTACCTCTGTCTACGCGGGTAAAAGGGGCATCCTTTCGATTTGAT CAGGCTAAATTACGTTTAGAGCTTTCGATTCCACAGGCTCTATTACAAAAACGGCCCAGGGGCTACATTGAGCGGGCGGA ATGGCAGGAAGGCGAAAAACTCGCATTCATTAACTACAGCGCCAACGCTTATCGCAGTGATACTCGCGGCCAGCAAAAGA GAACCTCTGATTTTGGTTTTATTGGCCTTAAAAGTGGGATCAATCTGGGATTGTGGCAAGTACGCCAGCAATCGAACGTC CGCTACGCCAGTAATGATAGTGGCAGCGATACCCAGTGGAATAGCATCCGCACTTATGTGCAACGCCCGATCCCACAGTT GGATAGCCAGTTAACGTTAGGCGAAACTTTCACTGACAGTACATTATTTGGCAGCATGTCGTTCCTCGGTGCGAAAATGG CTACCGACCAACGCATGTGGCCAGTGTCAATGCGCGGTTTCTCCCCAGAGGTCCGGGGTGTCGCCAGTACCAACGCACGC GTTATTATTCGTCAGAATGGACGTGAAATTTATGAGACGAACGTCGCTCCTGGCCCGTTCGTTATTAACGATTTGTTCAG CACCAGTAGCCAAGGCGACCTTAATGTTGAGGTTATTGAGGCCAATGGTAGCCGCTCGACATTTACGGTGCCATTCAGTG CCGTTCCTGATTCAATGCGCCCAGGCGTTAGCCGCTATAATGCGGTGATCGGGGAATCACGCGATTTCACCAATATTGAT AATTATTTCACTGACTTCACCTATGAACGCGGCCTCACCAATCAACTGACGGCCAACAGTGGTGTCCGTTTAGCAAAAGA CTACACGGCATTACTTGCCGGTGGCGTATTAGGGACACCGGTCGGTGCTTTGGGCCTCAATGCCACCTATTCTCACGCCA AAGTTGAAAATGATAAAACGCAAGATGGTTGGCGGATGCAGGCCACCTATAGCCAGACCTTTAATCAAACCGGAACCACG TTCTCTTTAGCCGGGTATCGTTACTCAACGAAAGGGTATCGCGATTTAAATGATGTGTTCGGGGTGCGTTCGATGCAAAA AAACGGGGGAACGTGGGATTCATCAACCTATAAACAGCGTAGCCAATTCACCACTACTATTAATCAAGACCTCGGTAATT GGGGCCAGTTATACGCCTCTGCCTCAACCAGTGATTATTATAACGATACGGCGAGAGATACCCAGTTACAGCTAGGCTAT TCAAATAGTTATCAGCAAATCAGTTACAATTTGGCTGTCAGCCGCCAGCGCAGTGTTTATACCTCCACTCTGTATAACTG GGATAGCCCTGATACCGACGAGACGGCAACCACCACGCGCTACGGTAATACCGAGAACATCGCAACATTCACCGTTTCTA TTCCACTGAATATTGGTAGCAACAACCAATATCTATCAATGTCAGCCAGCCGTAATCCGAAAAGCGGTAATAACTATCAA ACATCATTATCAGGCACCGCCGGTGAGCGAAATTCCTTCAACTATGCATTAAATGCAGGCTATGACGACAGCAACTTCGG TAGTAGCTCAAATAATTGGGGGGCCAACGTACAGAAGCAATTCCCCAATGCTACCGTTAATGGCAGCTATTCTCGTGGCA ATAATTACACCCAATATGGCGCAGGCGCTCGTGGTGCGGCGGTAATACATCGACAAGGCGTGACTCTGGGCCCTTATCTG GGTGAGACCTTTGGTTTAATTGAAGCTAATGGTGCTCAAGGGGCAAGAATTGATAGTAACGGTTTTGCTCTGGTGCCCGC GCTAACGCCTTATAACTACAACACAATAGGGCTGGATACCAAGGGGATTAACCGTAACACCGAGTTGAAAGAGAATCAGG GCCGTGTCGTCCCTTATGCCGGGGCAGCGGTAAAAGTGAAATTTGAAACACTGACTGGCTATGCGGTGTTAATTCAAGCC GAAGGTGAGGGGTTACCACTGGGTGCCGATGTGTATAACAGCAAAGATGAACTGGTTGGAATGGTAGGTCAGGGGAATCA GATCTACGCACGGATAGCCGATAACAAAGGTACACTTGATGTCCGTTGGGGCGAAAGCAGCGGTGATCAGTGTCAATTAC CTTATGCTTTTAATCGCCAGGATACCGAGCAAGATATCATTCATATAACCGCGAGTTGCCGCCGCTAA
Upstream 100 bases:
>100_bases CTCGTCAGCAACGATTAACTTTCTGATCATGAATGATTTCGGCGGGCAAGATGCCGGTAGCTATCGTATTTAGCAGTAAC TTTCCGGTAAAGGAATATTT
Downstream 100 bases:
>100_bases CCCTATGAGAAAAATAATGTTAAGACCAACAAAGCCATTAATATCTTCCGGCATTTCGCAGTCTACCACTGCGGTCTATT GCCGCCGCCCATATTTTCTT
Product: putative outer membrane usher protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 875; Mature: 875
Protein sequence:
>875_residues MVQARVILKKNFSGRRKALTLCITLILHIDTAFGQEEPQNFEFDESLFLGTKYASGLTQLNKKNSITAGNYDAVDVLVNN KLFKRMSVQFIKDANSSEVYPCLSDELLTAAGVELGRENSTPPKEPHVTEANTPITETHAPTNQCLPLSTRVKGASFRFD QAKLRLELSIPQALLQKRPRGYIERAEWQEGEKLAFINYSANAYRSDTRGQQKRTSDFGFIGLKSGINLGLWQVRQQSNV RYASNDSGSDTQWNSIRTYVQRPIPQLDSQLTLGETFTDSTLFGSMSFLGAKMATDQRMWPVSMRGFSPEVRGVASTNAR VIIRQNGREIYETNVAPGPFVINDLFSTSSQGDLNVEVIEANGSRSTFTVPFSAVPDSMRPGVSRYNAVIGESRDFTNID NYFTDFTYERGLTNQLTANSGVRLAKDYTALLAGGVLGTPVGALGLNATYSHAKVENDKTQDGWRMQATYSQTFNQTGTT FSLAGYRYSTKGYRDLNDVFGVRSMQKNGGTWDSSTYKQRSQFTTTINQDLGNWGQLYASASTSDYYNDTARDTQLQLGY SNSYQQISYNLAVSRQRSVYTSTLYNWDSPDTDETATTTRYGNTENIATFTVSIPLNIGSNNQYLSMSASRNPKSGNNYQ TSLSGTAGERNSFNYALNAGYDDSNFGSSSNNWGANVQKQFPNATVNGSYSRGNNYTQYGAGARGAAVIHRQGVTLGPYL GETFGLIEANGAQGARIDSNGFALVPALTPYNYNTIGLDTKGINRNTELKENQGRVVPYAGAAVKVKFETLTGYAVLIQA EGEGLPLGADVYNSKDELVGMVGQGNQIYARIADNKGTLDVRWGESSGDQCQLPYAFNRQDTEQDIIHITASCRR
Sequences:
>Translated_875_residues MVQARVILKKNFSGRRKALTLCITLILHIDTAFGQEEPQNFEFDESLFLGTKYASGLTQLNKKNSITAGNYDAVDVLVNN KLFKRMSVQFIKDANSSEVYPCLSDELLTAAGVELGRENSTPPKEPHVTEANTPITETHAPTNQCLPLSTRVKGASFRFD QAKLRLELSIPQALLQKRPRGYIERAEWQEGEKLAFINYSANAYRSDTRGQQKRTSDFGFIGLKSGINLGLWQVRQQSNV RYASNDSGSDTQWNSIRTYVQRPIPQLDSQLTLGETFTDSTLFGSMSFLGAKMATDQRMWPVSMRGFSPEVRGVASTNAR VIIRQNGREIYETNVAPGPFVINDLFSTSSQGDLNVEVIEANGSRSTFTVPFSAVPDSMRPGVSRYNAVIGESRDFTNID NYFTDFTYERGLTNQLTANSGVRLAKDYTALLAGGVLGTPVGALGLNATYSHAKVENDKTQDGWRMQATYSQTFNQTGTT FSLAGYRYSTKGYRDLNDVFGVRSMQKNGGTWDSSTYKQRSQFTTTINQDLGNWGQLYASASTSDYYNDTARDTQLQLGY SNSYQQISYNLAVSRQRSVYTSTLYNWDSPDTDETATTTRYGNTENIATFTVSIPLNIGSNNQYLSMSASRNPKSGNNYQ TSLSGTAGERNSFNYALNAGYDDSNFGSSSNNWGANVQKQFPNATVNGSYSRGNNYTQYGAGARGAAVIHRQGVTLGPYL GETFGLIEANGAQGARIDSNGFALVPALTPYNYNTIGLDTKGINRNTELKENQGRVVPYAGAAVKVKFETLTGYAVLIQA EGEGLPLGADVYNSKDELVGMVGQGNQIYARIADNKGTLDVRWGESSGDQCQLPYAFNRQDTEQDIIHITASCRR >Mature_875_residues MVQARVILKKNFSGRRKALTLCITLILHIDTAFGQEEPQNFEFDESLFLGTKYASGLTQLNKKNSITAGNYDAVDVLVNN KLFKRMSVQFIKDANSSEVYPCLSDELLTAAGVELGRENSTPPKEPHVTEANTPITETHAPTNQCLPLSTRVKGASFRFD QAKLRLELSIPQALLQKRPRGYIERAEWQEGEKLAFINYSANAYRSDTRGQQKRTSDFGFIGLKSGINLGLWQVRQQSNV RYASNDSGSDTQWNSIRTYVQRPIPQLDSQLTLGETFTDSTLFGSMSFLGAKMATDQRMWPVSMRGFSPEVRGVASTNAR VIIRQNGREIYETNVAPGPFVINDLFSTSSQGDLNVEVIEANGSRSTFTVPFSAVPDSMRPGVSRYNAVIGESRDFTNID NYFTDFTYERGLTNQLTANSGVRLAKDYTALLAGGVLGTPVGALGLNATYSHAKVENDKTQDGWRMQATYSQTFNQTGTT FSLAGYRYSTKGYRDLNDVFGVRSMQKNGGTWDSSTYKQRSQFTTTINQDLGNWGQLYASASTSDYYNDTARDTQLQLGY SNSYQQISYNLAVSRQRSVYTSTLYNWDSPDTDETATTTRYGNTENIATFTVSIPLNIGSNNQYLSMSASRNPKSGNNYQ TSLSGTAGERNSFNYALNAGYDDSNFGSSSNNWGANVQKQFPNATVNGSYSRGNNYTQYGAGARGAAVIHRQGVTLGPYL GETFGLIEANGAQGARIDSNGFALVPALTPYNYNTIGLDTKGINRNTELKENQGRVVPYAGAAVKVKFETLTGYAVLIQA EGEGLPLGADVYNSKDELVGMVGQGNQIYARIADNKGTLDVRWGESSGDQCQLPYAFNRQDTEQDIIHITASCRR
Specific function: Involved in the export and assembly of fimA fimbrial subunits across the outer membrane [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell outer membrane; Multi-pass membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the fimbrial export usher family [H]
Homologues:
Organism=Escherichia coli, GI1786332, Length=870, Percent_Identity=31.0344827586207, Blast_Score=368, Evalue=1e-102, Organism=Escherichia coli, GI1787172, Length=893, Percent_Identity=30.1231802911534, Blast_Score=366, Evalue=1e-102, Organism=Escherichia coli, GI1790772, Length=858, Percent_Identity=30.0699300699301, Blast_Score=363, Evalue=1e-101, Organism=Escherichia coli, GI1786744, Length=907, Percent_Identity=30.5402425578831, Blast_Score=359, Evalue=1e-100, Organism=Escherichia coli, GI1789533, Length=880, Percent_Identity=30.7954545454545, Blast_Score=355, Evalue=5e-99, Organism=Escherichia coli, GI1788427, Length=865, Percent_Identity=30.0578034682081, Blast_Score=354, Evalue=2e-98, Organism=Escherichia coli, GI87081778, Length=860, Percent_Identity=25.2325581395349, Blast_Score=224, Evalue=2e-59, Organism=Escherichia coli, GI1789610, Length=743, Percent_Identity=23.2839838492598, Blast_Score=117, Evalue=5e-27,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000015 - InterPro: IPR018030 [H]
Pfam domain/function: PF00577 Usher [H]
EC number: NA
Molecular weight: Translated: 96387; Mature: 96387
Theoretical pI: Translated: 7.83; Mature: 7.83
Prosite motif: PS01151 FIMBRIAL_USHER
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 1.8 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 1.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MVQARVILKKNFSGRRKALTLCITLILHIDTAFGQEEPQNFEFDESLFLGTKYASGLTQL CCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECHHHHHHHHH NKKNSITAGNYDAVDVLVNNKLFKRMSVQFIKDANSSEVYPCLSDELLTAAGVELGRENS CCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCC TPPKEPHVTEANTPITETHAPTNQCLPLSTRVKGASFRFDQAKLRLELSIPQALLQKRPR CCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCEEEECCEEEEEEEECCHHHHHCCCC GYIERAEWQEGEKLAFINYSANAYRSDTRGQQKRTSDFGFIGLKSGINLGLWQVRQQSNV CCHHHCCCCCCCEEEEEEECCCCCCCCCCCCHHHCCCCCEEEECCCCCCCCEEEHHHCCC RYASNDSGSDTQWNSIRTYVQRPIPQLDSQLTLGETFTDSTLFGSMSFLGAKMATDQRMW EEECCCCCCCCCHHHHHHHHHCCCHHHCCCEECCCCCCCCHHHHHHHHHHHHHCCCCCCC PVSMRGFSPEVRGVASTNARVIIRQNGREIYETNVAPGPFVINDLFSTSSQGDLNVEVIE EEECCCCCCCCCEEECCCCEEEEEECCCEEEECCCCCCCEEEEHHHCCCCCCCEEEEEEE ANGSRSTFTVPFSAVPDSMRPGVSRYNAVIGESRDFTNIDNYFTDFTYERGLTNQLTANS CCCCCEEEEEEHHCCCCCCCCCHHHHHHHHCCCCCCCCHHHHHHCEEECCCCCCCCCCCC GVRLAKDYTALLAGGVLGTPVGALGLNATYSHAKVENDKTQDGWRMQATYSQTFNQTGTT CCEEHHHHHHHHHCCHHCCCCHHHCCCCCCCCEECCCCCCCCCEEEEEEHHHHHCCCCCE FSLAGYRYSTKGYRDLNDVFGVRSMQKNGGTWDSSTYKQRSQFTTTINQDLGNWGQLYAS EEEECEEECCCCCCCHHHHHCCHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHEEEE ASTSDYYNDTARDTQLQLGYSNSYQQISYNLAVSRQRSVYTSTLYNWDSPDTDETATTTR CCCCCCCCCCCCCEEEEECCCCCCEEEEEEEEECCCCCEEEEEEECCCCCCCCCCCEEEE YGNTENIATFTVSIPLNIGSNNQYLSMSASRNPKSGNNYQTSLSGTAGERNSFNYALNAG CCCCCCEEEEEEEEEEEECCCCCEEEEECCCCCCCCCCEEEEECCCCCCCCCCEEEEECC YDDSNFGSSSNNWGANVQKQFPNATVNGSYSRGNNYTQYGAGARGAAVIHRQGVTLGPYL CCCCCCCCCCCCCCCCHHHHCCCCEECCCCCCCCCCEECCCCCCCEEEEEECCCEECCCC GETFGLIEANGAQGARIDSNGFALVPALTPYNYNTIGLDTKGINRNTELKENQGRVVPYA CCCCCEEECCCCCCCEECCCCEEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCEEEEC GAAVKVKFETLTGYAVLIQAEGEGLPLGADVYNSKDELVGMVGQGNQIYARIADNKGTLD CCEEEEEEEEECCEEEEEEECCCCCCCCCHHCCCCCCEEEEECCCCEEEEEEECCCCEEE VRWGESSGDQCQLPYAFNRQDTEQDIIHITASCRR EEECCCCCCEEECCEECCCCCCCCEEEEEEEECCC >Mature Secondary Structure MVQARVILKKNFSGRRKALTLCITLILHIDTAFGQEEPQNFEFDESLFLGTKYASGLTQL CCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECHHHHHHHHH NKKNSITAGNYDAVDVLVNNKLFKRMSVQFIKDANSSEVYPCLSDELLTAAGVELGRENS CCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCC TPPKEPHVTEANTPITETHAPTNQCLPLSTRVKGASFRFDQAKLRLELSIPQALLQKRPR CCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCEEEECCEEEEEEEECCHHHHHCCCC GYIERAEWQEGEKLAFINYSANAYRSDTRGQQKRTSDFGFIGLKSGINLGLWQVRQQSNV CCHHHCCCCCCCEEEEEEECCCCCCCCCCCCHHHCCCCCEEEECCCCCCCCEEEHHHCCC RYASNDSGSDTQWNSIRTYVQRPIPQLDSQLTLGETFTDSTLFGSMSFLGAKMATDQRMW EEECCCCCCCCCHHHHHHHHHCCCHHHCCCEECCCCCCCCHHHHHHHHHHHHHCCCCCCC PVSMRGFSPEVRGVASTNARVIIRQNGREIYETNVAPGPFVINDLFSTSSQGDLNVEVIE EEECCCCCCCCCEEECCCCEEEEEECCCEEEECCCCCCCEEEEHHHCCCCCCCEEEEEEE ANGSRSTFTVPFSAVPDSMRPGVSRYNAVIGESRDFTNIDNYFTDFTYERGLTNQLTANS CCCCCEEEEEEHHCCCCCCCCCHHHHHHHHCCCCCCCCHHHHHHCEEECCCCCCCCCCCC GVRLAKDYTALLAGGVLGTPVGALGLNATYSHAKVENDKTQDGWRMQATYSQTFNQTGTT CCEEHHHHHHHHHCCHHCCCCHHHCCCCCCCCEECCCCCCCCCEEEEEEHHHHHCCCCCE FSLAGYRYSTKGYRDLNDVFGVRSMQKNGGTWDSSTYKQRSQFTTTINQDLGNWGQLYAS EEEECEEECCCCCCCHHHHHCCHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHEEEE ASTSDYYNDTARDTQLQLGYSNSYQQISYNLAVSRQRSVYTSTLYNWDSPDTDETATTTR CCCCCCCCCCCCCEEEEECCCCCCEEEEEEEEECCCCCEEEEEEECCCCCCCCCCCEEEE YGNTENIATFTVSIPLNIGSNNQYLSMSASRNPKSGNNYQTSLSGTAGERNSFNYALNAG CCCCCCEEEEEEEEEEEECCCCCEEEEECCCCCCCCCCEEEEECCCCCCCCCCEEEEECC YDDSNFGSSSNNWGANVQKQFPNATVNGSYSRGNNYTQYGAGARGAAVIHRQGVTLGPYL CCCCCCCCCCCCCCCCHHHHCCCCEECCCCCCCCCCEECCCCCCCEEEEEECCCEECCCC GETFGLIEANGAQGARIDSNGFALVPALTPYNYNTIGLDTKGINRNTELKENQGRVVPYA CCCCCEEECCCCCCCEECCCCEEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCEEEEC GAAVKVKFETLTGYAVLIQAEGEGLPLGADVYNSKDELVGMVGQGNQIYARIADNKGTLD CCEEEEEEEEECCEEEEEEECCCCCCCCCHHCCCCCCEEEEECCCCEEEEEEECCCCEEE VRWGESSGDQCQLPYAFNRQDTEQDIIHITASCRR EEECCCCCCEEECCEECCCCCCCCEEEEEEEECCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 11677609 [H]