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The map label for this gene is rsd [H]

Identifier: 218930742

GI number: 218930742

Start: 4189717

End: 4190226

Strand: Direct

Name: rsd [H]

Synonym: YPO3737

Alternate gene names: 218930742

Gene position: 4189717-4190226 (Clockwise)

Preceding gene: 218930734

Following gene: 218930743

Centisome position: 90.03

GC content: 44.9

Gene sequence:

>510_bases
ATGCTCAACCGACTGGAAAGCCTGACTCAACGCGTTGGCGGTAGTAATGAATTAATTGATCAATGGCTTCATGCGCGTAA
AGAACTGTTAGTCTCTTATTGCACCGTGATCGGTATTAAGCCGCAAAAAGAGAAGCATACCCCGCTTAATGCAAAAACGC
TGGAGAACTTTTGCCATAATTTAGTCGACTATCTTTCTTCAGGCCATTTCCATCTCTATGACAGAATTATCAAAGAGGTA
GAAGGCGCATCTAGCCCCAAAATGGCACTGACAGCCAAAATTCATCCTGCATTAAAAAACAACACTCAAACTATCATGGC
ATTCCATGATTGCTATACAAACATTGAAATCGACGACGATAGCTGCACCGAGTATCAACAAGCTTTATCGGATATCGGTG
AAGCGCTTGACGCCCGTTTCAGGCTGGAAGACCAATTAATTCAATGGGCCGCCGAATCTTGGCAAGCCGCCCAGCTAGCG
GATGCGGATAAAAAGAGCCAGGTCAACTGA

Upstream 100 bases:

>100_bases
CCATATCGTTGTTGCACAACCTCTATTTCACTGGCAATCTAGAAACCGGCTGTTACATTTTTGTAACCCACAATATTTTT
TCTTACTAATGGAGTCGTTC

Downstream 100 bases:

>100_bases
CCGCCGCCTGTAACTGCGAATAAACAGCAGATACGGGTAGCGTGCACAAAATGAGCAAGCAGAATAGCCTGCTCATAAGT
AGGCTATTGTAGTTTTAATT

Product: anti-RNA polymerase sigma 70 factor

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 169; Mature: 169

Protein sequence:

>169_residues
MLNRLESLTQRVGGSNELIDQWLHARKELLVSYCTVIGIKPQKEKHTPLNAKTLENFCHNLVDYLSSGHFHLYDRIIKEV
EGASSPKMALTAKIHPALKNNTQTIMAFHDCYTNIEIDDDSCTEYQQALSDIGEALDARFRLEDQLIQWAAESWQAAQLA
DADKKSQVN

Sequences:

>Translated_169_residues
MLNRLESLTQRVGGSNELIDQWLHARKELLVSYCTVIGIKPQKEKHTPLNAKTLENFCHNLVDYLSSGHFHLYDRIIKEV
EGASSPKMALTAKIHPALKNNTQTIMAFHDCYTNIEIDDDSCTEYQQALSDIGEALDARFRLEDQLIQWAAESWQAAQLA
DADKKSQVN
>Mature_169_residues
MLNRLESLTQRVGGSNELIDQWLHARKELLVSYCTVIGIKPQKEKHTPLNAKTLENFCHNLVDYLSSGHFHLYDRIIKEV
EGASSPKMALTAKIHPALKNNTQTIMAFHDCYTNIEIDDDSCTEYQQALSDIGEALDARFRLEDQLIQWAAESWQAAQLA
DADKKSQVN

Specific function: Has binding activity to the major sigma subunit of RNA polymerase. May be involved in replacement of the RNA polymerase sigma subunit from sigma-70 to sigma-S during the transition from exponential growth to the stationary phase [H]

COG id: COG3160

COG function: function code K; Regulator of sigma D

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the Rsd/AlgQ family [H]

Homologues:

Organism=Escherichia coli, GI1790428, Length=147, Percent_Identity=55.7823129251701, Blast_Score=171, Evalue=3e-44,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007448 [H]

Pfam domain/function: PF04353 Rsd_AlgQ [H]

EC number: NA

Molecular weight: Translated: 19187; Mature: 19187

Theoretical pI: Translated: 5.54; Mature: 5.54

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.4 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
2.4 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLNRLESLTQRVGGSNELIDQWLHARKELLVSYCTVIGIKPQKEKHTPLNAKTLENFCHN
CCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHH
LVDYLSSGHFHLYDRIIKEVEGASSPKMALTAKIHPALKNNTQTIMAFHDCYTNIEIDDD
HHHHHHCCCHHHHHHHHHHHCCCCCCCEEEEEECCHHHCCCCHHEEHHHHHHCCCEECCC
SCTEYQQALSDIGEALDARFRLEDQLIQWAAESWQAAQLADADKKSQVN
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure
MLNRLESLTQRVGGSNELIDQWLHARKELLVSYCTVIGIKPQKEKHTPLNAKTLENFCHN
CCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHH
LVDYLSSGHFHLYDRIIKEVEGASSPKMALTAKIHPALKNNTQTIMAFHDCYTNIEIDDD
HHHHHHCCCHHHHHHHHHHHCCCCCCCEEEEEECCHHHCCCCHHEEHHHHHHCCCEECCC
SCTEYQQALSDIGEALDARFRLEDQLIQWAAESWQAAQLADADKKSQVN
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA