Definition | Yersinia pestis CO92 chromosome, complete genome. |
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Accession | NC_003143 |
Length | 4,653,728 |
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The map label for this gene is rhsD [C]
Identifier: 218930684
GI number: 218930684
Start: 4098633
End: 4101491
Strand: Reverse
Name: rhsD [C]
Synonym: YPO3673
Alternate gene names: 218930684
Gene position: 4101491-4098633 (Counterclockwise)
Preceding gene: 218930685
Following gene: 218930674
Centisome position: 88.13
GC content: 47.11
Gene sequence:
>2859_bases ATGTCCACAAGTTTACCAACCCAGCTTTGCGCCAACACCCCCGCCCTCACCATCCACGATAACCGGGGGTTAGCTATTCG TACACTGGCTTATAACCGCCGCGATCATAATGAAACCGTTGACGAACTGATCAGCCGCAACCGCTATAACGCCTCCGGTC AGCTAATCGCCAGCCGTGATCCGCGCCTTGAGGTGGATAATTTCCGCTATCAATACAGCCTCAGCGGTGTTCCACTGCGC ACCGACAGCGTCGATAGCGGCAGTACACTGCAACTGGCAGATAGTGCTGGCCGCACGGTGCTCACGCTCGATGCACACCA CACCCGCCGCTGGGTGGAGTATGAGACCGGTGAACACAGTTTAGGCCGCCCGCTAAGTTACCACGAGCAAGCCAAAGGCG GCCTGAAAACGGTTACCGACCGCTTTTTCTATGCCACAAACAGCGAGCAGGATAAAAACTGCAACCTGAACGGCCAGTGT GTACGCCATTACGACAGCGCTGGTTTGCAGGCACTGATTAGCCAGTCGATTATTGGCGTACCACTGCAACAACAGCGCCG TCTACTGACGAATCCCAAAGGCCCAGTTGACTGGTTTGGCGAAAAGGAAAACTGGGGCGCTCGCCTGAGCGAACAGCCGT TTGTTAGCCATAGCACCACCGATGCTCTCGGCCAGTTACTCACGCAAACCGATGCCAAAGGCCATATCCAGCGCATGGCC TATAACCGCGCCGGACAACTTATCGGTTCGTGGCTAACAATAAAAAATAGCGCTGAACAGGTGATCCTCCGTTCACTCAC CTATTCGGCTGCTGGGCAAAAACTGCGCGAAGAGAGCGGCAACGGGGTGATTACCGAATACCGTTATGAACCCCAGACTC AGCGCTTAATCGGCATTAAAACCACCCGTCCGGCGAAGAAAGACCGCCCGACCCGGTTACAAGACCTGCGTTACGATTAT GACCCGGTCGGGAATATTCTCGCCATCCATAATGACGCCGAAGCCACCCGCTTCTACCGTAATCAGAAAATCGTGCCGGA AACCACTTACCGCTACGATGCACTGTATCAGCTTATCGAGGCCACTGGCCGTGAAGCGGATACCAACGGCATACAAAACA GCCAGTTACCCGCGTTGGCGTCACTGAACGACAGCAACCAGTTCGTCAACTACACCCGCAGCTACCACTATGACCGCGCC GGTAACCTGCTAAAAATTCAGCATACCGGTGCCAGCCAATACAGTACCCATATCACGGTGTCCGATTCGTCCAATCACGG CATTCAGCAACAAGATGGCATCATCGCCCGTGATATTCGCTCCCAGTTTGATGCGGCGGGTAATCAGCAACAACTGCAAC CCGGTCAGCCCCTGCGCTGGAACAGCCGCAATCAGTTACAGCAGGTGGAACCTGTGCCCCGCAACGATGGCATCAGTGAC AGCGAAAGTTATCTCTATGATGGCAGCGGTAGGCGGGTGGCCAAAATCAGTCTCCATAAAACCCATAACGCCATCCAAAC CCGTTCGGTCATTTATTTAGCGGGACTGGAACTGCGTGGCCAACATAATGACAATAATCTGACAGAAAGTTTTCAGGTGA TAACCGTGGGTGCTGCGGGCCGTGCTCAGGTACGGGTATTACACTGGGAGAGCGGCCAACCCGTTGATATCGTCAATGAC CAACTGCGTTACAGTTTCGATAATCACCTTGGCTCGGCGTTAATCGAATTAGACAGCGATGGCGATATTATCAGCCAGGA AGAATATTACCCATTTGGCGGTACCGCGGTGTTAGCCTCCCGTAATACCGTGGAAGCCAAATATAAAACCGTTCGTTATT CCGGTAAAGAGCGCGATGCCACCGGGCTGTATTATTATGGTTACCGTTATTACCAACCGTGGCTGGGCCGATGGTTAAGC GCCGACCCCGCAGGCACTATAGACGGACTGAATTTATATCGGATGGTGAGGAATAACCCAATCAGATGGCGTGATAACAA TGGGCTATTAACCGAAGAGCAAATTAATATGTACGTTAATTTGTTTAGTAATATTGGATTAAAAAATGATGATGAATTAA AGAGTGAATTATTAAAATATGGTTTAAGTGAAGAAGAGCAAAACCAGATATACCTTAATATGTTAAGACCTATGCAGTCT GGATCATCAAGCTCATTATTCTCCTTCCCTTCTGAAAGTAGTTCAAGTTCTGGGAGTACGCAAAGTGTTGATTCAGGTTA TCTCAGTCCAGTAAGAAACTATCATTTTTTTGAAGATATTAAGTTAGCAACAATGCACCGTCCCTATCCAAAAAAACAAG CCTCTAGTGACACAATAACATATTCAGCAGAAGATTTAACAGAAGCTAGCCCTATAAAAATTCTCATTGGTTTGGATTTG ACCAGTAAAAACACCCAACCATATAAGTCAGCGCTTGCCGAAAAAGGAATTAAGTATATCACTAAAGAAAAATATGAAAT AACAGACTTTTTTGAAGAAGGAGGATTATCGACTGAACAAATAGATTTAACAGTAAATAAAATATTAAAATTACAAAAAA AGGATCTTGTAGGAATTCATTGTGGGGCAGGTAATGGAAGAAGTGGAGTTATTGCATCAGCATTATCCATTAATAAACAG TATACAACAGATAAAATAAATAGTTTTGACGTAACTCATTCATTAAGAGGGTCAATACTTAAAGACACACAAACATACCA AGTGGATACGGTAACCGCCAAGGCGGTTGGGATTATCAGAGAAATAAATCCTAAAGCAGTGGAACGTAATCAGGATGTTA TTTCCCTATATAGATATTCTCATTTTTTATATACAAGAAAACACACTACATCATTATAA
Upstream 100 bases:
>100_bases TGCCGGAGAGCGAACAACTGACATAAAAGCAGCACGTGAATACTCACGTTATTTATATAGCAAACAGAATCGATAATTAA GAATATTAAGGAGCCATTTT
Downstream 100 bases:
>100_bases TTTATTAATTTTAAACACCTTCCCTATTTTGAATAGGGAAGGTGTCTATACCCGTAATACTGATTTTTTAAAATCGCTGA TACTGACAGCAGCATTGGCA
Product: putative insecticidal toxin
Products: NA
Alternate protein names: Insecticidal xin Complex; Insecticidal xin Protein; Insecticidal xin Complex Protein; C Component Of Insecticidal xin Complex; Rhs Family Protein-Like Protein; YD Repeat Protein; Insecticidal xin; Zinc Finger C2H2-Type Domain-Containing Protein; FG-GAP Repeat Protein; Insecticidal xin SepC/Tcc Class; Insecticidal xin SepC/TccC; Rhs Family Protein; Insecticial xin; Insecticidal xin Complex Protein TcaC; Insecticidal xin Complex TccC; Insecticidal xin Complex-Like Protein; Insecticial xin Complex; Insecticidal xin Complex Protein Tccc
Number of amino acids: Translated: 952; Mature: 951
Protein sequence:
>952_residues MSTSLPTQLCANTPALTIHDNRGLAIRTLAYNRRDHNETVDELISRNRYNASGQLIASRDPRLEVDNFRYQYSLSGVPLR TDSVDSGSTLQLADSAGRTVLTLDAHHTRRWVEYETGEHSLGRPLSYHEQAKGGLKTVTDRFFYATNSEQDKNCNLNGQC VRHYDSAGLQALISQSIIGVPLQQQRRLLTNPKGPVDWFGEKENWGARLSEQPFVSHSTTDALGQLLTQTDAKGHIQRMA YNRAGQLIGSWLTIKNSAEQVILRSLTYSAAGQKLREESGNGVITEYRYEPQTQRLIGIKTTRPAKKDRPTRLQDLRYDY DPVGNILAIHNDAEATRFYRNQKIVPETTYRYDALYQLIEATGREADTNGIQNSQLPALASLNDSNQFVNYTRSYHYDRA GNLLKIQHTGASQYSTHITVSDSSNHGIQQQDGIIARDIRSQFDAAGNQQQLQPGQPLRWNSRNQLQQVEPVPRNDGISD SESYLYDGSGRRVAKISLHKTHNAIQTRSVIYLAGLELRGQHNDNNLTESFQVITVGAAGRAQVRVLHWESGQPVDIVND QLRYSFDNHLGSALIELDSDGDIISQEEYYPFGGTAVLASRNTVEAKYKTVRYSGKERDATGLYYYGYRYYQPWLGRWLS ADPAGTIDGLNLYRMVRNNPIRWRDNNGLLTEEQINMYVNLFSNIGLKNDDELKSELLKYGLSEEEQNQIYLNMLRPMQS GSSSSLFSFPSESSSSSGSTQSVDSGYLSPVRNYHFFEDIKLATMHRPYPKKQASSDTITYSAEDLTEASPIKILIGLDL TSKNTQPYKSALAEKGIKYITKEKYEITDFFEEGGLSTEQIDLTVNKILKLQKKDLVGIHCGAGNGRSGVIASALSINKQ YTTDKINSFDVTHSLRGSILKDTQTYQVDTVTAKAVGIIREINPKAVERNQDVISLYRYSHFLYTRKHTTSL
Sequences:
>Translated_952_residues MSTSLPTQLCANTPALTIHDNRGLAIRTLAYNRRDHNETVDELISRNRYNASGQLIASRDPRLEVDNFRYQYSLSGVPLR TDSVDSGSTLQLADSAGRTVLTLDAHHTRRWVEYETGEHSLGRPLSYHEQAKGGLKTVTDRFFYATNSEQDKNCNLNGQC VRHYDSAGLQALISQSIIGVPLQQQRRLLTNPKGPVDWFGEKENWGARLSEQPFVSHSTTDALGQLLTQTDAKGHIQRMA YNRAGQLIGSWLTIKNSAEQVILRSLTYSAAGQKLREESGNGVITEYRYEPQTQRLIGIKTTRPAKKDRPTRLQDLRYDY DPVGNILAIHNDAEATRFYRNQKIVPETTYRYDALYQLIEATGREADTNGIQNSQLPALASLNDSNQFVNYTRSYHYDRA GNLLKIQHTGASQYSTHITVSDSSNHGIQQQDGIIARDIRSQFDAAGNQQQLQPGQPLRWNSRNQLQQVEPVPRNDGISD SESYLYDGSGRRVAKISLHKTHNAIQTRSVIYLAGLELRGQHNDNNLTESFQVITVGAAGRAQVRVLHWESGQPVDIVND QLRYSFDNHLGSALIELDSDGDIISQEEYYPFGGTAVLASRNTVEAKYKTVRYSGKERDATGLYYYGYRYYQPWLGRWLS ADPAGTIDGLNLYRMVRNNPIRWRDNNGLLTEEQINMYVNLFSNIGLKNDDELKSELLKYGLSEEEQNQIYLNMLRPMQS GSSSSLFSFPSESSSSSGSTQSVDSGYLSPVRNYHFFEDIKLATMHRPYPKKQASSDTITYSAEDLTEASPIKILIGLDL TSKNTQPYKSALAEKGIKYITKEKYEITDFFEEGGLSTEQIDLTVNKILKLQKKDLVGIHCGAGNGRSGVIASALSINKQ YTTDKINSFDVTHSLRGSILKDTQTYQVDTVTAKAVGIIREINPKAVERNQDVISLYRYSHFLYTRKHTTSL >Mature_951_residues STSLPTQLCANTPALTIHDNRGLAIRTLAYNRRDHNETVDELISRNRYNASGQLIASRDPRLEVDNFRYQYSLSGVPLRT DSVDSGSTLQLADSAGRTVLTLDAHHTRRWVEYETGEHSLGRPLSYHEQAKGGLKTVTDRFFYATNSEQDKNCNLNGQCV RHYDSAGLQALISQSIIGVPLQQQRRLLTNPKGPVDWFGEKENWGARLSEQPFVSHSTTDALGQLLTQTDAKGHIQRMAY NRAGQLIGSWLTIKNSAEQVILRSLTYSAAGQKLREESGNGVITEYRYEPQTQRLIGIKTTRPAKKDRPTRLQDLRYDYD PVGNILAIHNDAEATRFYRNQKIVPETTYRYDALYQLIEATGREADTNGIQNSQLPALASLNDSNQFVNYTRSYHYDRAG NLLKIQHTGASQYSTHITVSDSSNHGIQQQDGIIARDIRSQFDAAGNQQQLQPGQPLRWNSRNQLQQVEPVPRNDGISDS ESYLYDGSGRRVAKISLHKTHNAIQTRSVIYLAGLELRGQHNDNNLTESFQVITVGAAGRAQVRVLHWESGQPVDIVNDQ LRYSFDNHLGSALIELDSDGDIISQEEYYPFGGTAVLASRNTVEAKYKTVRYSGKERDATGLYYYGYRYYQPWLGRWLSA DPAGTIDGLNLYRMVRNNPIRWRDNNGLLTEEQINMYVNLFSNIGLKNDDELKSELLKYGLSEEEQNQIYLNMLRPMQSG SSSSLFSFPSESSSSSGSTQSVDSGYLSPVRNYHFFEDIKLATMHRPYPKKQASSDTITYSAEDLTEASPIKILIGLDLT SKNTQPYKSALAEKGIKYITKEKYEITDFFEEGGLSTEQIDLTVNKILKLQKKDLVGIHCGAGNGRSGVIASALSINKQY TTDKINSFDVTHSLRGSILKDTQTYQVDTVTAKAVGIIREINPKAVERNQDVISLYRYSHFLYTRKHTTSL
Specific function: Rhs Elements Have A Nonessential Function. They May Play An Important Role In The Natural Ecology Of The Cell. [C]
COG id: COG3209
COG function: function code M; Rhs family protein
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 107206; Mature: 107074
Theoretical pI: Translated: 7.82; Mature: 7.82
Prosite motif: PS00383 TYR_PHOSPHATASE_1 ; PS50056 TYR_PHOSPHATASE_2 ; PS00213 LIPOCALIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 0.7 %Met (Translated Protein) 1.2 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 0.6 %Met (Mature Protein) 1.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSTSLPTQLCANTPALTIHDNRGLAIRTLAYNRRDHNETVDELISRNRYNASGQLIASRD CCCCCCHHHHCCCCEEEEECCCCEEEEEEEECCCCCHHHHHHHHHCCCCCCCCCEEECCC PRLEVDNFRYQYSLSGVPLRTDSVDSGSTLQLADSAGRTVLTLDAHHTRRWVEYETGEHS CCEEECCEEEEEEECCCEEECCCCCCCCEEEEECCCCCEEEEEECCCCCEEEEECCCCCC LGRPLSYHEQAKGGLKTVTDRFFYATNSEQDKNCNLNGQCVRHYDSAGLQALISQSIIGV CCCCCCHHHHHCCCHHHHHHHEEEECCCCCCCCCCCCCCEEEEHHHHHHHHHHHHHHCCC PLQQQRRLLTNPKGPVDWFGEKENWGARLSEQPFVSHSTTDALGQLLTQTDAKGHIQRMA CHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHH YNRAGQLIGSWLTIKNSAEQVILRSLTYSAAGQKLREESGNGVITEYRYEPQTQRLIGIK HHHHHHHHHHEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCEEEEEE TTRPAKKDRPTRLQDLRYDYDPVGNILAIHNDAEATRFYRNQKIVPETTYRYDALYQLIE CCCCCCCCCCCHHHHCCCCCCCCCCEEEEECCHHHHHHHHCCCCCCCCHHHHHHHHHHHH ATGREADTNGIQNSQLPALASLNDSNQFVNYTRSYHYDRAGNLLKIQHTGASQYSTHITV HCCCCCCCCCCCCCCCCEEEECCCCCHHHHHHHHCCCCCCCCEEEEEECCCCCEEEEEEE SDSSNHGIQQQDGIIARDIRSQFDAAGNQQQLQPGQPLRWNSRNQLQQVEPVPRNDGISD ECCCCCCCCHHCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCC SESYLYDGSGRRVAKISLHKTHNAIQTRSVIYLAGLELRGQHNDNNLTESFQVITVGAAG CCCEEECCCCCEEEEEEEEHHHCHHHHCEEEEEEEEEEECCCCCCCCCCEEEEEEEECCC RAQVRVLHWESGQPVDIVNDQLRYSFDNHLGSALIELDSDGDIISQEEYYPFGGTAVLAS CEEEEEEEECCCCCHHHHCHHHHHHHHHCCCCEEEEECCCCCEECCCCCCCCCCEEEEEC RNTVEAKYKTVRYSGKERDATGLYYYGYRYYQPWLGRWLSADPAGTIDGLNLYRMVRNNP CCCCEEEEEEEEECCCCCCCCEEEEECEEEECHHHHHHCCCCCCCCCCCHHHHHHHHCCC IRWRDNNGLLTEEQINMYVNLFSNIGLKNDDELKSELLKYGLSEEEQNQIYLNMLRPMQS CEEECCCCCEEHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCEEEEEEHHHHCC GSSSSLFSFPSESSSSSGSTQSVDSGYLSPVRNYHFFEDIKLATMHRPYPKKQASSDTIT CCCCCEEECCCCCCCCCCCCCCCCCCCCCHHHCCCHHHCEEEEECCCCCCCCCCCCCEEE YSAEDLTEASPIKILIGLDLTSKNTQPYKSALAEKGIKYITKEKYEITDFFEEGGLSTEQ EEHHHCCCCCCEEEEEEEEECCCCCCHHHHHHHHCCHHHHHCCCCHHHHHHHHCCCCCEE IDLTVNKILKLQKKDLVGIHCGAGNGRSGVIASALSINKQYTTDKINSFDVTHSLRGSIL EEEEHHHHHHHHCCCEEEEEECCCCCCCCEEEHHHHCCCCCCCCCCCCEECHHHHCCCEE KDTQTYQVDTVTAKAVGIIREINPKAVERNQDVISLYRYSHFLYTRKHTTSL CCCCEEEEEEEHHHHHHHHHHCCHHHHHCCCHHHHHHHHHHHEEEECCCCCC >Mature Secondary Structure STSLPTQLCANTPALTIHDNRGLAIRTLAYNRRDHNETVDELISRNRYNASGQLIASRD CCCCCHHHHCCCCEEEEECCCCEEEEEEEECCCCCHHHHHHHHHCCCCCCCCCEEECCC PRLEVDNFRYQYSLSGVPLRTDSVDSGSTLQLADSAGRTVLTLDAHHTRRWVEYETGEHS CCEEECCEEEEEEECCCEEECCCCCCCCEEEEECCCCCEEEEEECCCCCEEEEECCCCCC LGRPLSYHEQAKGGLKTVTDRFFYATNSEQDKNCNLNGQCVRHYDSAGLQALISQSIIGV CCCCCCHHHHHCCCHHHHHHHEEEECCCCCCCCCCCCCCEEEEHHHHHHHHHHHHHHCCC PLQQQRRLLTNPKGPVDWFGEKENWGARLSEQPFVSHSTTDALGQLLTQTDAKGHIQRMA CHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHH YNRAGQLIGSWLTIKNSAEQVILRSLTYSAAGQKLREESGNGVITEYRYEPQTQRLIGIK HHHHHHHHHHEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCEEEEEE TTRPAKKDRPTRLQDLRYDYDPVGNILAIHNDAEATRFYRNQKIVPETTYRYDALYQLIE CCCCCCCCCCCHHHHCCCCCCCCCCEEEEECCHHHHHHHHCCCCCCCCHHHHHHHHHHHH ATGREADTNGIQNSQLPALASLNDSNQFVNYTRSYHYDRAGNLLKIQHTGASQYSTHITV HCCCCCCCCCCCCCCCCEEEECCCCCHHHHHHHHCCCCCCCCEEEEEECCCCCEEEEEEE SDSSNHGIQQQDGIIARDIRSQFDAAGNQQQLQPGQPLRWNSRNQLQQVEPVPRNDGISD ECCCCCCCCHHCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCC SESYLYDGSGRRVAKISLHKTHNAIQTRSVIYLAGLELRGQHNDNNLTESFQVITVGAAG CCCEEECCCCCEEEEEEEEHHHCHHHHCEEEEEEEEEEECCCCCCCCCCEEEEEEEECCC RAQVRVLHWESGQPVDIVNDQLRYSFDNHLGSALIELDSDGDIISQEEYYPFGGTAVLAS CEEEEEEEECCCCCHHHHCHHHHHHHHHCCCCEEEEECCCCCEECCCCCCCCCCEEEEEC RNTVEAKYKTVRYSGKERDATGLYYYGYRYYQPWLGRWLSADPAGTIDGLNLYRMVRNNP CCCCEEEEEEEEECCCCCCCCEEEEECEEEECHHHHHHCCCCCCCCCCCHHHHHHHHCCC IRWRDNNGLLTEEQINMYVNLFSNIGLKNDDELKSELLKYGLSEEEQNQIYLNMLRPMQS CEEECCCCCEEHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCEEEEEEHHHHCC GSSSSLFSFPSESSSSSGSTQSVDSGYLSPVRNYHFFEDIKLATMHRPYPKKQASSDTIT CCCCCEEECCCCCCCCCCCCCCCCCCCCCHHHCCCHHHCEEEEECCCCCCCCCCCCCEEE YSAEDLTEASPIKILIGLDLTSKNTQPYKSALAEKGIKYITKEKYEITDFFEEGGLSTEQ EEHHHCCCCCCEEEEEEEEECCCCCCHHHHHHHHCCHHHHHCCCCHHHHHHHHCCCCCEE IDLTVNKILKLQKKDLVGIHCGAGNGRSGVIASALSINKQYTTDKINSFDVTHSLRGSIL EEEEHHHHHHHHCCCEEEEEECCCCCCCCEEEHHHHCCCCCCCCCCCCEECHHHHCCCEE KDTQTYQVDTVTAKAVGIIREINPKAVERNQDVISLYRYSHFLYTRKHTTSL CCCCEEEEEEEHHHHHHHHHHCCHHHHHCCCHHHHHHHHHHHEEEECCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA