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The map label for this gene is yfgA

Identifier: 218929940

GI number: 218929940

Start: 3216088

End: 3217125

Strand: Reverse

Name: yfgA

Synonym: YPO2880

Alternate gene names: 218929940

Gene position: 3217125-3216088 (Counterclockwise)

Preceding gene: 218929941

Following gene: 218929939

Centisome position: 69.13

GC content: 50.29

Gene sequence:

>1038_bases
ATGAATACTGAAGCCTCCCAAGATCAAACTGTTACAGAGACGCCAGGTGTGCGCCTGCGTCAAGCCCGCGAATCATTAGG
GCTAACCCAGCAGACAGTTGCAGAACGTCTGTGTCTGAAAGTATCCACAATCCGTGATATTGAGGAGGATAACGCGCAAG
CTAATCTCGCCTCGACATTCCACCGTGGCTACATTCGTTCTTACGCCAAGCTGGTTCATCTTCCTGAAGATGAGTTATTG
CCTATTTTGGAGAAACAAGCGCCAGTCAGAGCGGCGAAAGTTGCCCCAATGCAAAGTTTTTCATTGGGTAAAAAACACAA
AAAACGTGATGGCTGGTTGATGAGTTTCACCTGGCTTATTGTGTTGGTTGTGTTAGGTCTGACCGGAGCATGGTGGTGGC
AAAATCATCAGGCACAGCAAGCAGAGATTGCCAATATGGTTGATCAATCTTCTGCCCAACTGTCACAAAATGGCGGGCAA
CCAGTGCCGCTAACTGATGATAACAGCGATGCTATTGCGCCAACGGATGCCCCGGCACCGGTAGCCAATGGTCAGCCGGT
ACCACTGACAAATCATTCAGGCTCGGCAATAACTAATTCAGCTACAACCAGTTCAGTTCCAAAAACAACTAGTACCGAAC
CTGTCGATACGGCGAATACAAATACCACAATGCATCAGGAGGGGGCTGCGTCAGCGGCCGTTTCCCCAAGTCAGGTCCCG
CAACCTGGTATGCCCACAGGCCAACCGCCATTACCTACAGCAGACGCAGGGGTAAGTGGTAGCGCGTCATCTGTGGGGGC
GTTAGTGATGAATTTTACAGCAGATTGTTGGTTGCAGGTTGTTGATGCAACGGGCAAGACGCTGTTTAGTGGCATTCAAA
AAGGGGGCGCTGTCCTTAACCTGGCGGGTAAAGCGCCCTATAAGCTGACTATCGGTGCACCAGGTGCTCTGACGATTTCG
TATCAGGGTAACCCGGTAGATTTAAGTAAGTTTATTAAGGCTAATCGCGTAGCCCGCCTGACTGTCTGTGTAGAGTAG

Upstream 100 bases:

>100_bases
TTCGCCGCGCTGGCAGGCCGTCAAGATAGTGTACAACGCTATGGCAAGCAGCTTGCGCGAAGTTTTCCACAATCCAAACA
GTACCAGCATTTTCTAGCTA

Downstream 100 bases:

>100_bases
AATGATGGTTTTGACAAATATCATGTTGTAAGAACTACACGACCGTAAAGGAGAGTATGTAATGCATAACGGATCCCCTA
TTATTCGGCGTAAATCGACC

Product: cytoskeletal protein RodZ

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 345; Mature: 345

Protein sequence:

>345_residues
MNTEASQDQTVTETPGVRLRQARESLGLTQQTVAERLCLKVSTIRDIEEDNAQANLASTFHRGYIRSYAKLVHLPEDELL
PILEKQAPVRAAKVAPMQSFSLGKKHKKRDGWLMSFTWLIVLVVLGLTGAWWWQNHQAQQAEIANMVDQSSAQLSQNGGQ
PVPLTDDNSDAIAPTDAPAPVANGQPVPLTNHSGSAITNSATTSSVPKTTSTEPVDTANTNTTMHQEGAASAAVSPSQVP
QPGMPTGQPPLPTADAGVSGSASSVGALVMNFTADCWLQVVDATGKTLFSGIQKGGAVLNLAGKAPYKLTIGAPGALTIS
YQGNPVDLSKFIKANRVARLTVCVE

Sequences:

>Translated_345_residues
MNTEASQDQTVTETPGVRLRQARESLGLTQQTVAERLCLKVSTIRDIEEDNAQANLASTFHRGYIRSYAKLVHLPEDELL
PILEKQAPVRAAKVAPMQSFSLGKKHKKRDGWLMSFTWLIVLVVLGLTGAWWWQNHQAQQAEIANMVDQSSAQLSQNGGQ
PVPLTDDNSDAIAPTDAPAPVANGQPVPLTNHSGSAITNSATTSSVPKTTSTEPVDTANTNTTMHQEGAASAAVSPSQVP
QPGMPTGQPPLPTADAGVSGSASSVGALVMNFTADCWLQVVDATGKTLFSGIQKGGAVLNLAGKAPYKLTIGAPGALTIS
YQGNPVDLSKFIKANRVARLTVCVE
>Mature_345_residues
MNTEASQDQTVTETPGVRLRQARESLGLTQQTVAERLCLKVSTIRDIEEDNAQANLASTFHRGYIRSYAKLVHLPEDELL
PILEKQAPVRAAKVAPMQSFSLGKKHKKRDGWLMSFTWLIVLVVLGLTGAWWWQNHQAQQAEIANMVDQSSAQLSQNGGQ
PVPLTDDNSDAIAPTDAPAPVANGQPVPLTNHSGSAITNSATTSSVPKTTSTEPVDTANTNTTMHQEGAASAAVSPSQVP
QPGMPTGQPPLPTADAGVSGSASSVGALVMNFTADCWLQVVDATGKTLFSGIQKGGAVLNLAGKAPYKLTIGAPGALTIS
YQGNPVDLSKFIKANRVARLTVCVE

Specific function: Cytoskeletal protein that is involved in cell-shape control through regulation of the length of the long axis

COG id: COG1426

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cell inner membrane; Single-pass type II membrane protein. Note=Forms helical filaments along the long axis of the cell (By similarity)

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH cro/C1-type DNA-binding domain

Homologues:

Organism=Escherichia coli, GI1788864, Length=347, Percent_Identity=56.4841498559078, Blast_Score=375, Evalue=1e-105,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RODZ_YERPA (Q1C5I7)

Other databases:

- EMBL:   CP000308
- RefSeq:   YP_652230.1
- ProteinModelPortal:   Q1C5I7
- STRING:   Q1C5I7
- GeneID:   4118189
- GenomeReviews:   CP000308_GR
- KEGG:   ypa:YPA_2320
- eggNOG:   COG1426
- HOGENOM:   HBG678691
- OMA:   KLPGHTF
- ProtClustDB:   PRK10856
- BioCyc:   YPES360102:YPA_2320-MONOMER
- HAMAP:   MF_02017
- InterPro:   IPR001387
- InterPro:   IPR010982
- SMART:   SM00530

Pfam domain/function: PF01381 HTH_3; SSF47413 Lambda_like_DNA

EC number: NA

Molecular weight: Translated: 36440; Mature: 36440

Theoretical pI: Translated: 6.79; Mature: 6.79

Prosite motif: PS50943 HTH_CROC1

Important sites: NA

Signals:

None

Transmembrane regions:

HASH(0xf2978c8)-;

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNTEASQDQTVTETPGVRLRQARESLGLTQQTVAERLCLKVSTIRDIEEDNAQANLASTF
CCCCCCCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
HRGYIRSYAKLVHLPEDELLPILEKQAPVRAAKVAPMQSFSLGKKHKKRDGWLMSFTWLI
HHHHHHHHHHHHCCCCHHHHHHHHHCCCCHHHHHCCCHHHHCCHHHHHCCCCHHHHHHHH
VLVVLGLTGAWWWQNHQAQQAEIANMVDQSSAQLSQNGGQPVPLTDDNSDAIAPTDAPAP
HHHHHHCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC
VANGQPVPLTNHSGSAITNSATTSSVPKTTSTEPVDTANTNTTMHQEGAASAAVSPSQVP
CCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCHHHCC
QPGMPTGQPPLPTADAGVSGSASSVGALVMNFTADCWLQVVDATGKTLFSGIQKGGAVLN
CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEE
LAGKAPYKLTIGAPGALTISYQGNPVDLSKFIKANRVARLTVCVE
ECCCCCEEEEECCCCEEEEEECCCCCCHHHHHHHCCEEEEEEEEH
>Mature Secondary Structure
MNTEASQDQTVTETPGVRLRQARESLGLTQQTVAERLCLKVSTIRDIEEDNAQANLASTF
CCCCCCCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
HRGYIRSYAKLVHLPEDELLPILEKQAPVRAAKVAPMQSFSLGKKHKKRDGWLMSFTWLI
HHHHHHHHHHHHCCCCHHHHHHHHHCCCCHHHHHCCCHHHHCCHHHHHCCCCHHHHHHHH
VLVVLGLTGAWWWQNHQAQQAEIANMVDQSSAQLSQNGGQPVPLTDDNSDAIAPTDAPAP
HHHHHHCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC
VANGQPVPLTNHSGSAITNSATTSSVPKTTSTEPVDTANTNTTMHQEGAASAAVSPSQVP
CCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCHHHCC
QPGMPTGQPPLPTADAGVSGSASSVGALVMNFTADCWLQVVDATGKTLFSGIQKGGAVLN
CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEE
LAGKAPYKLTIGAPGALTISYQGNPVDLSKFIKANRVARLTVCVE
ECCCCCEEEEECCCCEEEEEECCCCCCHHHHHHHCCEEEEEEEEH

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA