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The map label for this gene is yapC [H]

Identifier: 218929863

GI number: 218929863

Start: 3125064

End: 3126980

Strand: Direct

Name: yapC [H]

Synonym: YPO2796

Alternate gene names: 218929863

Gene position: 3125064-3126980 (Clockwise)

Preceding gene: 218929859

Following gene: 218929864

Centisome position: 67.15

GC content: 47.16

Gene sequence:

>1917_bases
ATGGACAAAACATTATTGGCCGGTGCTATCAGTCTATCTTTAGTTATATTACCTGTTCAGGTATTGGCTTTTACACCGAA
TGTGGTGGGAATAACTGTCAACGATGAAGTCGTCATTCATGGTATACAGAATGTGCGCGACGGCGGAGTCATTAATAATG
GGCTGGTTAGTGACAATGCCGCAATTACTGTCACCAACGGGAGCAGTGCTGGTACGGCAAATAATACTACCGTGGGTGAT
AAAGGCTGGTTACAGATTACCGGTGCTCTGGCGACGGGTACCATTGTTAATCAAGGCGGGCTGCTTGACACCAAAACGGC
GGGTACCGTAATAGATAGCCAAATTAATGATGGCGGCCATATGACTCTGGGACTTAATAGCCAGTCTAAAGGCTACCTCA
ATATAGCGGCTGGCGCAGAACTTTTTGTTACCAACAACGATCCATACATCTCCGATGTGACCACCCATAACCCCGCACTG
CCTGCCAATGTTATGATTGAGAACCTCAACGTCGCGGGTCTGGTCGAAATCGGCCCTTCCTGGAAGGGCACGAGTATCGT
GCCGCTTCCCCTCTCTGACGTTTTAGGGCCGGTGCTGGTTACCCGAATCAATAATGTGACTTTGCAAGGGGGGGATATCA
ATTTAATGGCCTATTCTGCTGGTGGGCAATTTAACCGGCTGGAGATAGAAAATTTGTCTGGTCAGGGTAATTTTGCGATG
ACAACCCAGCTTGCCAGCAATACCGGGGATTTCATTACGGTCTCACAGCAGGCGACCGGCCAATTTGGTATTACCGTTCA
GGACAGCGGTAAAGAGCCGCAATCTGCCGACAACCTGGCACTGGTACATATTAATCGTGGTGATGCTCAGTTCCGTTTAC
TCAATACAGGCGGAGTGGTGGATTTAGGTGTTTACCAATACGGGCTATATAGTCAGGAAAGCAATGGCAGCACTGACTGG
TATCTGGCAACTAGCACAGAAGAACTGCCTGGTACAACACCGAACGTAACCGCTCCAATGCTCAGTTCCGCAGCACAAGG
TGTGCTGAATATGGCAGCGGCACCGCGGCATATCCTGAATGCGGAATTGAGTACCTTGCGTCAGCGCCAAGGCGAGTTGA
AGGCAGATGCGGAAGGGACTGTTGGCGTTTGGGCGCGTTACCTTACAGATGACAGCCGGTTGTCTGATAATAAAAATATC
GCTTTCAAGAATACCTTAAGTGGCATGGAAATTGGGGCCGATAAACAACTTGGATTAAACCGGGGTAATATGTTGATCGG
AGCATTTACCTCCTACAGTTCATCTGATGTCAAATCCACCCACGACGCTAATGGTGATATTCGCAGTTACGGTGGTGGCC
TCTATCTGACCTATTTGGATCAAAGCGGATTTTATGTTGATACGGTGCTAAAAGCTAACCGCTTTAATAATAAGATGAAT
ACACAGGAAACCCGTGGCGAATATAACCAGAATGCTCTTACCACCTCAGTAGAAAGTGGTTATCAATGGCCTGTTTATGC
CAATCTGGTGCTCGAACCCTATGGAAAGGTGAGTTATTCACGTATTGGTAGCGCAGATTATACTCTCAGTAACGGCATGG
TAGCGGAAGTGGCGAAAGCCGATAGCGTGCAAGGCGAGTTAGGCACGGTACTCGCCGCCTCTTACAGCATTAACCAAATG
ACGATAAAGCCTTATATTAAACTGGCTATTACCCGTGAATTTACCAAAAGTAATGCTGTAGCGATTAATAACATTGGTTT
CGATAATGATTTCTCCGGTAATGTCGGTAAATATGGCGTAGGCATAAATGCGACGGTAGCCAATAACACCGCCATTTTTG
CTGAAGTGGATTATCTCAATGGTTCAAAAATTGAAACACCGGTAACTGCCAATATCGGTTTCCGCCTTCGGTTCTAA

Upstream 100 bases:

>100_bases
CTGATAAACATAACGTTCAAACCGTCCCAAGGGCGGTGTGTCTCTTTTTACAATGAGTGATATAGCATCATCTCATTACA
TTTAATATTTTTGAGGTTTT

Downstream 100 bases:

>100_bases
TTGTTTCAGCCCCTCTTCTGAGGGGTTCAGACTGCTGACAAACCCCGATGACTCACTCTTGAACGGTGAGGATAGGCAGA
GGAGTAAAGCGTCCGCGCCA

Product: putative autotransporter protein

Products: NA

Alternate protein names: Glycoprotein TibA [H]

Number of amino acids: Translated: 638; Mature: 638

Protein sequence:

>638_residues
MDKTLLAGAISLSLVILPVQVLAFTPNVVGITVNDEVVIHGIQNVRDGGVINNGLVSDNAAITVTNGSSAGTANNTTVGD
KGWLQITGALATGTIVNQGGLLDTKTAGTVIDSQINDGGHMTLGLNSQSKGYLNIAAGAELFVTNNDPYISDVTTHNPAL
PANVMIENLNVAGLVEIGPSWKGTSIVPLPLSDVLGPVLVTRINNVTLQGGDINLMAYSAGGQFNRLEIENLSGQGNFAM
TTQLASNTGDFITVSQQATGQFGITVQDSGKEPQSADNLALVHINRGDAQFRLLNTGGVVDLGVYQYGLYSQESNGSTDW
YLATSTEELPGTTPNVTAPMLSSAAQGVLNMAAAPRHILNAELSTLRQRQGELKADAEGTVGVWARYLTDDSRLSDNKNI
AFKNTLSGMEIGADKQLGLNRGNMLIGAFTSYSSSDVKSTHDANGDIRSYGGGLYLTYLDQSGFYVDTVLKANRFNNKMN
TQETRGEYNQNALTTSVESGYQWPVYANLVLEPYGKVSYSRIGSADYTLSNGMVAEVAKADSVQGELGTVLAASYSINQM
TIKPYIKLAITREFTKSNAVAINNIGFDNDFSGNVGKYGVGINATVANNTAIFAEVDYLNGSKIETPVTANIGFRLRF

Sequences:

>Translated_638_residues
MDKTLLAGAISLSLVILPVQVLAFTPNVVGITVNDEVVIHGIQNVRDGGVINNGLVSDNAAITVTNGSSAGTANNTTVGD
KGWLQITGALATGTIVNQGGLLDTKTAGTVIDSQINDGGHMTLGLNSQSKGYLNIAAGAELFVTNNDPYISDVTTHNPAL
PANVMIENLNVAGLVEIGPSWKGTSIVPLPLSDVLGPVLVTRINNVTLQGGDINLMAYSAGGQFNRLEIENLSGQGNFAM
TTQLASNTGDFITVSQQATGQFGITVQDSGKEPQSADNLALVHINRGDAQFRLLNTGGVVDLGVYQYGLYSQESNGSTDW
YLATSTEELPGTTPNVTAPMLSSAAQGVLNMAAAPRHILNAELSTLRQRQGELKADAEGTVGVWARYLTDDSRLSDNKNI
AFKNTLSGMEIGADKQLGLNRGNMLIGAFTSYSSSDVKSTHDANGDIRSYGGGLYLTYLDQSGFYVDTVLKANRFNNKMN
TQETRGEYNQNALTTSVESGYQWPVYANLVLEPYGKVSYSRIGSADYTLSNGMVAEVAKADSVQGELGTVLAASYSINQM
TIKPYIKLAITREFTKSNAVAINNIGFDNDFSGNVGKYGVGINATVANNTAIFAEVDYLNGSKIETPVTANIGFRLRF
>Mature_638_residues
MDKTLLAGAISLSLVILPVQVLAFTPNVVGITVNDEVVIHGIQNVRDGGVINNGLVSDNAAITVTNGSSAGTANNTTVGD
KGWLQITGALATGTIVNQGGLLDTKTAGTVIDSQINDGGHMTLGLNSQSKGYLNIAAGAELFVTNNDPYISDVTTHNPAL
PANVMIENLNVAGLVEIGPSWKGTSIVPLPLSDVLGPVLVTRINNVTLQGGDINLMAYSAGGQFNRLEIENLSGQGNFAM
TTQLASNTGDFITVSQQATGQFGITVQDSGKEPQSADNLALVHINRGDAQFRLLNTGGVVDLGVYQYGLYSQESNGSTDW
YLATSTEELPGTTPNVTAPMLSSAAQGVLNMAAAPRHILNAELSTLRQRQGELKADAEGTVGVWARYLTDDSRLSDNKNI
AFKNTLSGMEIGADKQLGLNRGNMLIGAFTSYSSSDVKSTHDANGDIRSYGGGLYLTYLDQSGFYVDTVLKANRFNNKMN
TQETRGEYNQNALTTSVESGYQWPVYANLVLEPYGKVSYSRIGSADYTLSNGMVAEVAKADSVQGELGTVLAASYSINQM
TIKPYIKLAITREFTKSNAVAINNIGFDNDFSGNVGKYGVGINATVANNTAIFAEVDYLNGSKIETPVTANIGFRLRF

Specific function: Mediates both adhesion to and invasion of human intestine epithelial cells. Also mediates bacterial cell aggregation via intercellular TibA-TibA interaction. Enhances biofilm formation [H]

COG id: COG3468

COG function: function code MU; Type V secretory pathway, adhesin AidA

Gene ontology:

Cell location: Adhesin/invasin TibA translocator:Cell outer membrane; Multi-pass membrane protein (Potential). Note=The cleaved C-terminal fragment (autotransporter domain) is localized in the outer membrane [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 autotransporter (TC 1.B.12) domain [H]

Homologues:

Organism=Escherichia coli, GI87082145, Length=476, Percent_Identity=32.1428571428571, Blast_Score=208, Evalue=1e-54,
Organism=Escherichia coli, GI1787452, Length=458, Percent_Identity=25.1091703056769, Blast_Score=102, Evalue=9e-23,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005546
- InterPro:   IPR006315
- InterPro:   IPR012332
- InterPro:   IPR011050
- InterPro:   IPR004899
- InterPro:   IPR003991 [H]

Pfam domain/function: PF03797 Autotransporter; PF03212 Pertactin [H]

EC number: NA

Molecular weight: Translated: 67513; Mature: 67513

Theoretical pI: Translated: 4.55; Mature: 4.55

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDKTLLAGAISLSLVILPVQVLAFTPNVVGITVNDEVVIHGIQNVRDGGVINNGLVSDNA
CCCCEEEHHHHEEEEEEEEEEEEECCCEEEEEECCCEEEEECCCCCCCCCEECCEECCCC
AITVTNGSSAGTANNTTVGDKGWLQITGALATGTIVNQGGLLDTKTAGTVIDSQINDGGH
EEEEECCCCCCCCCCCCCCCCCEEEEEEEEEECEEEECCCCEECCCCCEEEECEECCCCE
MTLGLNSQSKGYLNIAAGAELFVTNNDPYISDVTTHNPALPANVMIENLNVAGLVEIGPS
EEEEECCCCCCEEEEECCEEEEEECCCCEEEEECCCCCCCCCEEEEECCCEEEEEEECCC
WKGTSIVPLPLSDVLGPVLVTRINNVTLQGGDINLMAYSAGGQFNRLEIENLSGQGNFAM
CCCCEEEECCHHHHHHHHHHEEECCEEEECCCEEEEEEECCCCEEEEEEECCCCCCCEEE
TTQLASNTGDFITVSQQATGQFGITVQDSGKEPQSADNLALVHINRGDAQFRLLNTGGVV
EEEECCCCCCEEEEECCCCCEEEEEEECCCCCCCCCCCEEEEEEECCCCEEEEEECCCEE
DLGVYQYGLYSQESNGSTDWYLATSTEELPGTTPNVTAPMLSSAAQGVLNMAAAPRHILN
EEEEEEEEEEECCCCCCCEEEEEECCHHCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHH
AELSTLRQRQGELKADAEGTVGVWARYLTDDSRLSDNKNIAFKNTLSGMEIGADKQLGLN
HHHHHHHHHCCCCCCCCCCCHHHHEEECCCCCCCCCCCCEEEEECCCCCEECCCCCCCCC
RGNMLIGAFTSYSSSDVKSTHDANGDIRSYGGGLYLTYLDQSGFYVDTVLKANRFNNKMN
CCCEEEEEEECCCCCCCCCCCCCCCCHHHCCCEEEEEEECCCCCEEEEEEEHHHCCCCCC
TQETRGEYNQNALTTSVESGYQWPVYANLVLEPYGKVSYSRIGSADYTLSNGMVAEVAKA
CHHHCCCCCCCEEEEECCCCCCCCEEEEEEECCCCCEEHHHCCCCCEEECCCCEEEHHHC
DSVQGELGTVLAASYSINQMTIKPYIKLAITREFTKSNAVAINNIGFDNDFSGNVGKYGV
CCCCCCCCEEEEEEEECCEEEECEEEEEEEEEECCCCCCEEEECCCCCCCCCCCCCEEEC
GINATVANNTAIFAEVDYLNGSKIETPVTANIGFRLRF
EEEEEEECCEEEEEEEEECCCCEECCCEEECCEEEEEC
>Mature Secondary Structure
MDKTLLAGAISLSLVILPVQVLAFTPNVVGITVNDEVVIHGIQNVRDGGVINNGLVSDNA
CCCCEEEHHHHEEEEEEEEEEEEECCCEEEEEECCCEEEEECCCCCCCCCEECCEECCCC
AITVTNGSSAGTANNTTVGDKGWLQITGALATGTIVNQGGLLDTKTAGTVIDSQINDGGH
EEEEECCCCCCCCCCCCCCCCCEEEEEEEEEECEEEECCCCEECCCCCEEEECEECCCCE
MTLGLNSQSKGYLNIAAGAELFVTNNDPYISDVTTHNPALPANVMIENLNVAGLVEIGPS
EEEEECCCCCCEEEEECCEEEEEECCCCEEEEECCCCCCCCCEEEEECCCEEEEEEECCC
WKGTSIVPLPLSDVLGPVLVTRINNVTLQGGDINLMAYSAGGQFNRLEIENLSGQGNFAM
CCCCEEEECCHHHHHHHHHHEEECCEEEECCCEEEEEEECCCCEEEEEEECCCCCCCEEE
TTQLASNTGDFITVSQQATGQFGITVQDSGKEPQSADNLALVHINRGDAQFRLLNTGGVV
EEEECCCCCCEEEEECCCCCEEEEEEECCCCCCCCCCCEEEEEEECCCCEEEEEECCCEE
DLGVYQYGLYSQESNGSTDWYLATSTEELPGTTPNVTAPMLSSAAQGVLNMAAAPRHILN
EEEEEEEEEEECCCCCCCEEEEEECCHHCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHH
AELSTLRQRQGELKADAEGTVGVWARYLTDDSRLSDNKNIAFKNTLSGMEIGADKQLGLN
HHHHHHHHHCCCCCCCCCCCHHHHEEECCCCCCCCCCCCEEEEECCCCCEECCCCCCCCC
RGNMLIGAFTSYSSSDVKSTHDANGDIRSYGGGLYLTYLDQSGFYVDTVLKANRFNNKMN
CCCEEEEEEECCCCCCCCCCCCCCCCHHHCCCEEEEEEECCCCCEEEEEEEHHHCCCCCC
TQETRGEYNQNALTTSVESGYQWPVYANLVLEPYGKVSYSRIGSADYTLSNGMVAEVAKA
CHHHCCCCCCCEEEEECCCCCCCCEEEEEEECCCCCEEHHHCCCCCEEECCCCEEEHHHC
DSVQGELGTVLAASYSINQMTIKPYIKLAITREFTKSNAVAINNIGFDNDFSGNVGKYGV
CCCCCCCCEEEEEEEECCEEEECEEEEEEEEEECCCCCCEEEECCCCCCCCCCCCCEEEC
GINATVANNTAIFAEVDYLNGSKIETPVTANIGFRLRF
EEEEEEECCEEEEEEEEECCCCEECCCEEECCEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10417177 [H]