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The map label for this gene is yjgF [C]

Identifier: 218928801

GI number: 218928801

Start: 1900110

End: 1900487

Strand: Reverse

Name: yjgF [C]

Synonym: YPO1669

Alternate gene names: 218928801

Gene position: 1900487-1900110 (Counterclockwise)

Preceding gene: 218928802

Following gene: 218928800

Centisome position: 40.84

GC content: 41.8

Gene sequence:

>378_bases
ATGATTATTAAAACTCAAAACGCACCAGCAGCTATCGGACCATACTCCCAAGGCGTTGTCGCCGGTAATTTGCTTTTTAT
TTCCGGTTGCTGCCCTTTCAGTGAAAAAGATGGATCAGTCGTAGGTATTGATATTACAGAGCAAACCATTCAAGCCATGA
AAAACCTAAAGGCTATTGTGGAAGCCACCGGTAGTTATATGAATGACGTGGTTAAAACCACTTGCTTTATCAGTGATATG
AACAATTTTCAGTCATTCAATACCATTTACGCGGGCTATTTCCCATCAGGGACATTCCCTGCCCGTTCATGTGTTGAAGT
CGCTCGGCTACCAAAAGACGTTCTCATTGAAGTAGAGGCTATTGTCTCTCTAAAATAA

Upstream 100 bases:

>100_bases
AGCTTATGCAAGCTCAGGACCACTGTGTTTATACATCGGTTCAAGTGCTCAAAGCACTGCGTGATAAATATTGCCCCAAC
ACCACAACAGGAATCGTCGA

Downstream 100 bases:

>100_bases
GGTAGGAATATTGTGAATAAATGGACAAAGCTTTGCTTCCTCATTTTGGGTGGAGGGACGATTTTCAAACTCTCCAGTAT
GAAAGATGTGTTTTACATCC

Product: YjgF family lipoprotein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 125; Mature: 125

Protein sequence:

>125_residues
MIIKTQNAPAAIGPYSQGVVAGNLLFISGCCPFSEKDGSVVGIDITEQTIQAMKNLKAIVEATGSYMNDVVKTTCFISDM
NNFQSFNTIYAGYFPSGTFPARSCVEVARLPKDVLIEVEAIVSLK

Sequences:

>Translated_125_residues
MIIKTQNAPAAIGPYSQGVVAGNLLFISGCCPFSEKDGSVVGIDITEQTIQAMKNLKAIVEATGSYMNDVVKTTCFISDM
NNFQSFNTIYAGYFPSGTFPARSCVEVARLPKDVLIEVEAIVSLK
>Mature_125_residues
MIIKTQNAPAAIGPYSQGVVAGNLLFISGCCPFSEKDGSVVGIDITEQTIQAMKNLKAIVEATGSYMNDVVKTTCFISDM
NNFQSFNTIYAGYFPSGTFPARSCVEVARLPKDVLIEVEAIVSLK

Specific function: Unknown

COG id: COG0251

COG function: function code J; Putative translation initiation inhibitor, yjgF family

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RutC family [H]

Homologues:

Organism=Homo sapiens, GI5032215, Length=120, Percent_Identity=43.3333333333333, Blast_Score=102, Evalue=6e-23,
Organism=Escherichia coli, GI87082396, Length=121, Percent_Identity=55.3719008264463, Blast_Score=133, Evalue=4e-33,
Organism=Escherichia coli, GI87082213, Length=122, Percent_Identity=47.5409836065574, Blast_Score=118, Evalue=1e-28,
Organism=Escherichia coli, GI1787245, Length=115, Percent_Identity=29.5652173913043, Blast_Score=75, Evalue=2e-15,
Organism=Caenorhabditis elegans, GI71982075, Length=121, Percent_Identity=42.9752066115703, Blast_Score=104, Evalue=1e-23,
Organism=Caenorhabditis elegans, GI25148896, Length=120, Percent_Identity=43.3333333333333, Blast_Score=103, Evalue=1e-23,
Organism=Caenorhabditis elegans, GI71982068, Length=121, Percent_Identity=42.9752066115703, Blast_Score=103, Evalue=2e-23,
Organism=Saccharomyces cerevisiae, GI6322138, Length=119, Percent_Identity=39.4957983193277, Blast_Score=94, Evalue=7e-21,
Organism=Saccharomyces cerevisiae, GI6320899, Length=102, Percent_Identity=42.156862745098, Blast_Score=83, Evalue=1e-17,
Organism=Drosophila melanogaster, GI19921376, Length=120, Percent_Identity=40, Blast_Score=99, Evalue=5e-22,

Paralogues:

None

Copy number: 1320 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013813
- InterPro:   IPR006175
- InterPro:   IPR006056
- InterPro:   IPR019897 [H]

Pfam domain/function: PF01042 Ribonuc_L-PSP [H]

EC number: NA

Molecular weight: Translated: 13422; Mature: 13422

Theoretical pI: Translated: 4.69; Mature: 4.69

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.2 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
6.4 %Cys+Met (Translated Protein)
3.2 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
6.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIIKTQNAPAAIGPYSQGVVAGNLLFISGCCPFSEKDGSVVGIDITEQTIQAMKNLKAIV
CEEECCCCCCCCCCCCCCEEECCEEEEECCCCCCCCCCCEEEEECCHHHHHHHHHHHHHH
EATGSYMNDVVKTTCFISDMNNFQSFNTIYAGYFPSGTFPARSCVEVARLPKDVLIEVEA
HHHHHHHHHHHHHHHHHHCCCCCHHHCEEEEEECCCCCCCHHHHHHHHHCCHHHEEEHHH
IVSLK
EEECC
>Mature Secondary Structure
MIIKTQNAPAAIGPYSQGVVAGNLLFISGCCPFSEKDGSVVGIDITEQTIQAMKNLKAIV
CEEECCCCCCCCCCCCCCEEECCEEEEECCCCCCCCCCCEEEEECCHHHHHHHHHHHHHH
EATGSYMNDVVKTTCFISDMNNFQSFNTIYAGYFPSGTFPARSCVEVARLPKDVLIEVEA
HHHHHHHHHHHHHHHHHHCCCCCHHHCEEEEEECCCCCCCHHHHHHHHHCCHHHEEEHHH
IVSLK
EEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9679194 [H]