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The map label for this gene is betI

Identifier: 218928331

GI number: 218928331

Start: 1314141

End: 1314737

Strand: Reverse

Name: betI

Synonym: YPO1167

Alternate gene names: 218928331

Gene position: 1314737-1314141 (Counterclockwise)

Preceding gene: 218928334

Following gene: 218928330

Centisome position: 28.25

GC content: 50.08

Gene sequence:

>597_bases
GTGCCAAAAGTAGGAATGCAGCCGATCCGACGGCAGCAATTGATCGAGGCAACAATGGCCGCGGTGAATGAAGTGGGAAT
GCATGAAGCGTCTATTGCGCAGATTGCAAAGCGTGCTGGCGTATCCAACGGCATTATCAGCCACTATTTCCGTGACAAAA
ATGGCCTGCTAGAAGCCACAATGAGGTATCTGATAAGGCACCTTGGCGAGGCGGTGAAGCAGCACTTGGCTGCCCTGTCC
GTCAACGATCCTCGTGCCCGTTTGCGGGCGATCGCCGAAGGCAACTTTGATGACAGCCAGATCAATAGCGCCGCGATGAA
AACCTGGCTGGCATTTTGGGCAAGCAGTATGCATAGCCCACAATTGTATCGGTTACAGCAGGTGAATAACCGCCGACTCT
ATTCAAATTTATGTGCTGAATTCAAACGTTGTTTACCGCGAGAGCAAGCGCAGCTCGCCGCTAAAGGTATGGCGGGTTTG
ATTGATGGATTATGGCTACGCAGTGCATTGAGTGGCGAACACTTTAACCGTCAGGAAGCGCTGCTGATTATCCATAACTA
TATTGAGCAGCAATTGAACATTAAATATAAGTGCTGA

Upstream 100 bases:

>100_bases
ATCAAAAAAAGTTTAATAGTGTTTCGTAACGGGTAACTAGCTGCCAATAGGCAGCATGAATAACAGTATTAATTGATTGA
ATTTAAAGGAGTCCAGACCC

Downstream 100 bases:

>100_bases
ACAAAATTCGAACGCACTGAACGGTATTTAGCCGTACAGGAAAAGACAGGAGAGACTATGTCCCGCTACGGCTTGCAAAA
ACTTTATATCAACGGCGCGT

Product: transcriptional regulator BetI

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 198; Mature: 197

Protein sequence:

>198_residues
MPKVGMQPIRRQQLIEATMAAVNEVGMHEASIAQIAKRAGVSNGIISHYFRDKNGLLEATMRYLIRHLGEAVKQHLAALS
VNDPRARLRAIAEGNFDDSQINSAAMKTWLAFWASSMHSPQLYRLQQVNNRRLYSNLCAEFKRCLPREQAQLAAKGMAGL
IDGLWLRSALSGEHFNRQEALLIIHNYIEQQLNIKYKC

Sequences:

>Translated_198_residues
MPKVGMQPIRRQQLIEATMAAVNEVGMHEASIAQIAKRAGVSNGIISHYFRDKNGLLEATMRYLIRHLGEAVKQHLAALS
VNDPRARLRAIAEGNFDDSQINSAAMKTWLAFWASSMHSPQLYRLQQVNNRRLYSNLCAEFKRCLPREQAQLAAKGMAGL
IDGLWLRSALSGEHFNRQEALLIIHNYIEQQLNIKYKC
>Mature_197_residues
PKVGMQPIRRQQLIEATMAAVNEVGMHEASIAQIAKRAGVSNGIISHYFRDKNGLLEATMRYLIRHLGEAVKQHLAALSV
NDPRARLRAIAEGNFDDSQINSAAMKTWLAFWASSMHSPQLYRLQQVNNRRLYSNLCAEFKRCLPREQAQLAAKGMAGLI
DGLWLRSALSGEHFNRQEALLIIHNYIEQQLNIKYKC

Specific function: Repressor involved in choline regulation of the bet genes

COG id: COG1309

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH tetR-type DNA-binding domain

Homologues:

Organism=Escherichia coli, GI1786505, Length=192, Percent_Identity=64.5833333333333, Blast_Score=254, Evalue=2e-69,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): BETI_YERP3 (A7FKL4)

Other databases:

- EMBL:   CP000720
- RefSeq:   YP_001401792.1
- ProteinModelPortal:   A7FKL4
- STRING:   A7FKL4
- GeneID:   5387954
- GenomeReviews:   CP000720_GR
- KEGG:   ypi:YpsIP31758_2829
- eggNOG:   COG1309
- HOGENOM:   HBG684746
- OMA:   INHYFGG
- ProtClustDB:   PRK00767
- BioCyc:   YPSE349747:YPSIP31758_2829-MONOMER
- HAMAP:   MF_00768
- InterPro:   IPR009057
- InterPro:   IPR015893
- InterPro:   IPR011075
- InterPro:   IPR017757
- InterPro:   IPR001647
- Gene3D:   G3DSA:1.10.357.10
- PRINTS:   PR00455
- TIGRFAMs:   TIGR03384

Pfam domain/function: PF00440 TetR_N; SSF46689 Homeodomain_like; SSF48498 TetR_like_C

EC number: NA

Molecular weight: Translated: 22428; Mature: 22297

Theoretical pI: Translated: 10.18; Mature: 10.18

Prosite motif: PS01081 HTH_TETR_1; PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
5.6 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPKVGMQPIRRQQLIEATMAAVNEVGMHEASIAQIAKRAGVSNGIISHYFRDKNGLLEAT
CCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCHHHHHHHHCCCCHHHHH
MRYLIRHLGEAVKQHLAALSVNDPRARLRAIAEGNFDDSQINSAAMKTWLAFWASSMHSP
HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCC
QLYRLQQVNNRRLYSNLCAEFKRCLPREQAQLAAKGMAGLIDGLWLRSALSGEHFNRQEA
HHHHHHHHHCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHH
LLIIHNYIEQQLNIKYKC
HHHHHHHHHHHHCCCCCC
>Mature Secondary Structure 
PKVGMQPIRRQQLIEATMAAVNEVGMHEASIAQIAKRAGVSNGIISHYFRDKNGLLEAT
CCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCHHHHHHHHCCCCHHHHH
MRYLIRHLGEAVKQHLAALSVNDPRARLRAIAEGNFDDSQINSAAMKTWLAFWASSMHSP
HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCC
QLYRLQQVNNRRLYSNLCAEFKRCLPREQAQLAAKGMAGLIDGLWLRSALSGEHFNRQEA
HHHHHHHHHCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHH
LLIIHNYIEQQLNIKYKC
HHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA