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The map label for this gene is pal [H]

Identifier: 218928293

GI number: 218928293

Start: 1271532

End: 1272038

Strand: Direct

Name: pal [H]

Synonym: YPO1125

Alternate gene names: 218928293

Gene position: 1271532-1272038 (Clockwise)

Preceding gene: 218928292

Following gene: 218928294

Centisome position: 27.32

GC content: 48.13

Gene sequence:

>507_bases
ATGCAACTGAACAAAGTGCTAAAAGGGCTAATGTTGGCTTTGCCTGTTCTGGCTGTGGCGGCTTGTAGTTCCAACAAAAG
CGCAAATAATGACCAATCTGGCATGGGCGCTGGCACTGGTACAGAGAACGGCAGCAACCTGTCTTCTGAAGAGCAAGCAC
GTCTTCAGATGCAAGAACTGCAAAAGAACAACATCGTTTACTTCGGTTTCGATAAATACGATATCGGTTCTGACTTCGCT
CAAATGCTGGATGCACATGCTGCATTCCTGCGTAGCAACCCATCTGACAAAGTTGTTGTTGAAGGCCACGCGGATGAACG
CGGTACGCCAGAATACAACATCGCTTTGGGTGAGCGTCGTGCTAGCGCAGTGAAAATGTACCTGCAAGGTAAAGGCGTTT
CTGCTGACCAGATCTCTATCGTTTCTTACGGTAAAGAGAAACCAGCAGTACTGGGCCATGACGAAGCAGCCTTTGCTAAA
AACCGTCGTGCAGTTCTGGTTTACTAA

Upstream 100 bases:

>100_bases
CGGCAACTGATGGACAGGTCAAATTTCCTGCCTGGTCGCCGTATCTGTGATGCATGTGTAAATACGTATGTATGGCAAAC
TATAAAAAAGGATCAAAGAG

Downstream 100 bases:

>100_bases
GAGAATCGCATGAACAGTAACTTCAGACGTCACTTAGTGGGTCTGTCGTTACTGGTTGGCGTAGCGGTCCCATGGGCCGC
TACTGCCCAAGCGCCAATCA

Product: peptidoglycan-associated outer membrane lipoprotein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 168; Mature: 168

Protein sequence:

>168_residues
MQLNKVLKGLMLALPVLAVAACSSNKSANNDQSGMGAGTGTENGSNLSSEEQARLQMQELQKNNIVYFGFDKYDIGSDFA
QMLDAHAAFLRSNPSDKVVVEGHADERGTPEYNIALGERRASAVKMYLQGKGVSADQISIVSYGKEKPAVLGHDEAAFAK
NRRAVLVY

Sequences:

>Translated_168_residues
MQLNKVLKGLMLALPVLAVAACSSNKSANNDQSGMGAGTGTENGSNLSSEEQARLQMQELQKNNIVYFGFDKYDIGSDFA
QMLDAHAAFLRSNPSDKVVVEGHADERGTPEYNIALGERRASAVKMYLQGKGVSADQISIVSYGKEKPAVLGHDEAAFAK
NRRAVLVY
>Mature_168_residues
MQLNKVLKGLMLALPVLAVAACSSNKSANNDQSGMGAGTGTENGSNLSSEEQARLQMQELQKNNIVYFGFDKYDIGSDFA
QMLDAHAAFLRSNPSDKVVVEGHADERGTPEYNIALGERRASAVKMYLQGKGVSADQISIVSYGKEKPAVLGHDEAAFAK
NRRAVLVY

Specific function: Thought to play a role in bacterial envelope integrity. Very strongly associated with the peptidoglycan [H]

COG id: COG2885

COG function: function code M; Outer membrane protein and related peptidoglycan-associated (lipo)proteins

Gene ontology:

Cell location: Cell outer membrane; Lipid-anchor [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 OmpA-like domain [H]

Homologues:

Organism=Escherichia coli, GI1786962, Length=173, Percent_Identity=84.393063583815, Blast_Score=263, Evalue=3e-72,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006664
- InterPro:   IPR006690
- InterPro:   IPR006665
- InterPro:   IPR014169 [H]

Pfam domain/function: PF00691 OmpA [H]

EC number: NA

Molecular weight: Translated: 18085; Mature: 18085

Theoretical pI: Translated: 6.80; Mature: 6.80

Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS01068 OMPA_1 ; PS51123 OMPA_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQLNKVLKGLMLALPVLAVAACSSNKSANNDQSGMGAGTGTENGSNLSSEEQARLQMQEL
CCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
QKNNIVYFGFDKYDIGSDFAQMLDAHAAFLRSNPSDKVVVEGHADERGTPEYNIALGERR
HHCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCEEEEECCHH
ASAVKMYLQGKGVSADQISIVSYGKEKPAVLGHDEAAFAKNRRAVLVY
HHHEEEEECCCCCCCCEEEEEECCCCCCCEECCCHHHHHCCCCEEEEC
>Mature Secondary Structure
MQLNKVLKGLMLALPVLAVAACSSNKSANNDQSGMGAGTGTENGSNLSSEEQARLQMQEL
CCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
QKNNIVYFGFDKYDIGSDFAQMLDAHAAFLRSNPSDKVVVEGHADERGTPEYNIALGERR
HHCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCEEEEECCHH
ASAVKMYLQGKGVSADQISIVSYGKEKPAVLGHDEAAFAKNRRAVLVY
HHHEEEEECCCCCCCCEEEEEECCCCCCCEECCCHHHHHCCCCEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]