Click here to switch to the map view.

The map label for this gene is tolB [H]

Identifier: 218928292

GI number: 218928292

Start: 1270189

End: 1271481

Strand: Direct

Name: tolB [H]

Synonym: YPO1124

Alternate gene names: 218928292

Gene position: 1270189-1271481 (Clockwise)

Preceding gene: 218928291

Following gene: 218928293

Centisome position: 27.29

GC content: 49.42

Gene sequence:

>1293_bases
ATGAAGCAGGCATTTCGAGTAGCGCTAGGCTTTTTAGTTTTATGGGCTTCGGTATTACATGCAGAAGTTCGGATTGAGAT
TACCCAAGGGGTAGACTCAGCACGTCCGATTGGGGTTGTTCCGTTCAAATGGATGGGGCCGGGCACACCACCTGAAGAAA
TTGGCGCCATCGTAGGTGCAGATTTACGTAACAGCGGCAAATTTAACCCAATTGATGCTGCTCGTATGCCACAACAGCCT
TCCACAGCCGCTGAAGTAACCCCTGCTGCTTGGACTGCTTTGGGGATCGATGCCGTTGTTGTTGGCCAAGTTCAACCAAG
TGCTGACGGTAGCTATGTGGTCTCTTACCAGCTAGTGGATACTTCTGGCTCTGCTGGCAGCATTTTGGCGCAAAATCAGT
ATAAAGTGACTAAACAATGGTTACGTTATTCAGCGCACACCGTCAGTGATGAAGTATTTGAAAAACTCACTGGGATTAAA
GGCGCTTTCCGTACTCGCATTGCTTATGTTGTGAAAACTAACGGTGGTAAATTCCCACATGAATTACGGGTTTCTGATTA
CGATGGCTACAACCAGTTTGTCGTCCACCGCTCTCCTGAACCTCTGATGTCACCCGCTTGGTCACCAGATGGTAGCAAAA
TTGCCTATGTGACTTTTGAAAGTGGCAAATCAGCATTGGTTATTCAGACGCTGGCAAATGGTGCGATTAGGCAAGTGGCC
TCATTCCCACGTCATAACGGTGCACCCGCGTTCTCACCTGATGGCACCAAGCTGGCCTTCGCGTTATCTAAAAGCGGTAG
CCTGAACTTGTATGTTATGGACTTGGCTTCAGGTCAAATCAGCCAAGTGACGGATGGTCGTAGCAATAATACTGAACCAA
GCTGGTTCCCGGATAGCCAAAATCTGGCTTATACCTCGGATCAGGGGGGGCGTCCACAAGTTTATAAAGTGAATATTAAT
GGCGGTGTGCCACAGCGAATCACGTGGGAAGGTTCTCAGAACCAGAACGCAGACGTGAGCCCTGATGGTAAGTTCCTGGT
ATTGGTTAGTTCCAATGGTGGGGCACAACACATCGCCAAACAGGATCTGGAAACGGGAGCCGTTCAAGTATTAACGGACA
CGTTACTGGATGAAACGCCTAGTATCGCGCCTAACGGCACCATGGTTATCTATAGCTCGACACAAGGGCTGGGTTCCGTG
TTACAGCTGGTCTCGACTGATGGGCGTTTCAAAGCGCGTCTTCCGGCAACTGATGGACAGGTCAAATTTCCTGCCTGGTC
GCCGTATCTGTGA

Upstream 100 bases:

>100_bases
AACGTTGTTAGTTAATGATGGATCATGTAGTTTTGTTTGCGGTGGTTTGTTAAAATTCTGCTAATTATCGCGGGCATCCC
GCTCGGGTAAGGGAGATAAA

Downstream 100 bases:

>100_bases
TGCATGTGTAAATACGTATGTATGGCAAACTATAAAAAAGGATCAAAGAGATGCAACTGAACAAAGTGCTAAAAGGGCTA
ATGTTGGCTTTGCCTGTTCT

Product: translocation protein TolB

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 430; Mature: 430

Protein sequence:

>430_residues
MKQAFRVALGFLVLWASVLHAEVRIEITQGVDSARPIGVVPFKWMGPGTPPEEIGAIVGADLRNSGKFNPIDAARMPQQP
STAAEVTPAAWTALGIDAVVVGQVQPSADGSYVVSYQLVDTSGSAGSILAQNQYKVTKQWLRYSAHTVSDEVFEKLTGIK
GAFRTRIAYVVKTNGGKFPHELRVSDYDGYNQFVVHRSPEPLMSPAWSPDGSKIAYVTFESGKSALVIQTLANGAIRQVA
SFPRHNGAPAFSPDGTKLAFALSKSGSLNLYVMDLASGQISQVTDGRSNNTEPSWFPDSQNLAYTSDQGGRPQVYKVNIN
GGVPQRITWEGSQNQNADVSPDGKFLVLVSSNGGAQHIAKQDLETGAVQVLTDTLLDETPSIAPNGTMVIYSSTQGLGSV
LQLVSTDGRFKARLPATDGQVKFPAWSPYL

Sequences:

>Translated_430_residues
MKQAFRVALGFLVLWASVLHAEVRIEITQGVDSARPIGVVPFKWMGPGTPPEEIGAIVGADLRNSGKFNPIDAARMPQQP
STAAEVTPAAWTALGIDAVVVGQVQPSADGSYVVSYQLVDTSGSAGSILAQNQYKVTKQWLRYSAHTVSDEVFEKLTGIK
GAFRTRIAYVVKTNGGKFPHELRVSDYDGYNQFVVHRSPEPLMSPAWSPDGSKIAYVTFESGKSALVIQTLANGAIRQVA
SFPRHNGAPAFSPDGTKLAFALSKSGSLNLYVMDLASGQISQVTDGRSNNTEPSWFPDSQNLAYTSDQGGRPQVYKVNIN
GGVPQRITWEGSQNQNADVSPDGKFLVLVSSNGGAQHIAKQDLETGAVQVLTDTLLDETPSIAPNGTMVIYSSTQGLGSV
LQLVSTDGRFKARLPATDGQVKFPAWSPYL
>Mature_430_residues
MKQAFRVALGFLVLWASVLHAEVRIEITQGVDSARPIGVVPFKWMGPGTPPEEIGAIVGADLRNSGKFNPIDAARMPQQP
STAAEVTPAAWTALGIDAVVVGQVQPSADGSYVVSYQLVDTSGSAGSILAQNQYKVTKQWLRYSAHTVSDEVFEKLTGIK
GAFRTRIAYVVKTNGGKFPHELRVSDYDGYNQFVVHRSPEPLMSPAWSPDGSKIAYVTFESGKSALVIQTLANGAIRQVA
SFPRHNGAPAFSPDGTKLAFALSKSGSLNLYVMDLASGQISQVTDGRSNNTEPSWFPDSQNLAYTSDQGGRPQVYKVNIN
GGVPQRITWEGSQNQNADVSPDGKFLVLVSSNGGAQHIAKQDLETGAVQVLTDTLLDETPSIAPNGTMVIYSSTQGLGSV
LQLVSTDGRFKARLPATDGQVKFPAWSPYL

Specific function: Involved in the tonB-independent uptake of proteins [H]

COG id: COG0823

COG function: function code U; Periplasmic component of the Tol biopolymer transport system

Gene ontology:

Cell location: Periplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the tolB family [H]

Homologues:

Organism=Escherichia coli, GI1786961, Length=430, Percent_Identity=84.8837209302326, Blast_Score=766, Evalue=0.0,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011659
- InterPro:   IPR014167
- InterPro:   IPR007195
- InterPro:   IPR015943 [H]

Pfam domain/function: PF07676 PD40; PF04052 TolB_N [H]

EC number: NA

Molecular weight: Translated: 46045; Mature: 46045

Theoretical pI: Translated: 7.18; Mature: 7.18

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKQAFRVALGFLVLWASVLHAEVRIEITQGVDSARPIGVVPFKWMGPGTPPEEIGAIVGA
CCHHHHHHHHHHHHHHHHHCEEEEEEEECCCCCCCCCEEEEEECCCCCCCHHHHHHEECC
DLRNSGKFNPIDAARMPQQPSTAAEVTPAAWTALGIDAVVVGQVQPSADGSYVVSYQLVD
CCCCCCCCCCCCHHHCCCCCCCCCCCCCHHHHHHCCCEEEEEEECCCCCCCEEEEEEEEE
TSGSAGSILAQNQYKVTKQWLRYSAHTVSDEVFEKLTGIKGAFRTRIAYVVKTNGGKFPH
CCCCCCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHEEEEEEEEECCCCCCCC
ELRVSDYDGYNQFVVHRSPEPLMSPAWSPDGSKIAYVTFESGKSALVIQTLANGAIRQVA
EEEECCCCCCCEEEEECCCCCCCCCCCCCCCCEEEEEEECCCCCEEEEEEHHCHHHHHHH
SFPRHNGAPAFSPDGTKLAFALSKSGSLNLYVMDLASGQISQVTDGRSNNTEPSWFPDSQ
HCCCCCCCCCCCCCCCEEEEEEECCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCC
NLAYTSDQGGRPQVYKVNINGGVPQRITWEGSQNQNADVSPDGKFLVLVSSNGGAQHIAK
CEEEECCCCCCCEEEEEEECCCCCCEEEECCCCCCCCCCCCCCCEEEEEECCCCHHHHHH
QDLETGAVQVLTDTLLDETPSIAPNGTMVIYSSTQGLGSVLQLVSTDGRFKARLPATDGQ
HHHHCCHHHHHHHHHHCCCCCCCCCCEEEEEECCCCHHHHHHHHCCCCCEEEECCCCCCC
VKFPAWSPYL
EECCCCCCCC
>Mature Secondary Structure
MKQAFRVALGFLVLWASVLHAEVRIEITQGVDSARPIGVVPFKWMGPGTPPEEIGAIVGA
CCHHHHHHHHHHHHHHHHHCEEEEEEEECCCCCCCCCEEEEEECCCCCCCHHHHHHEECC
DLRNSGKFNPIDAARMPQQPSTAAEVTPAAWTALGIDAVVVGQVQPSADGSYVVSYQLVD
CCCCCCCCCCCCHHHCCCCCCCCCCCCCHHHHHHCCCEEEEEEECCCCCCCEEEEEEEEE
TSGSAGSILAQNQYKVTKQWLRYSAHTVSDEVFEKLTGIKGAFRTRIAYVVKTNGGKFPH
CCCCCCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHEEEEEEEEECCCCCCCC
ELRVSDYDGYNQFVVHRSPEPLMSPAWSPDGSKIAYVTFESGKSALVIQTLANGAIRQVA
EEEECCCCCCCEEEEECCCCCCCCCCCCCCCCEEEEEEECCCCCEEEEEEHHCHHHHHHH
SFPRHNGAPAFSPDGTKLAFALSKSGSLNLYVMDLASGQISQVTDGRSNNTEPSWFPDSQ
HCCCCCCCCCCCCCCCEEEEEEECCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCC
NLAYTSDQGGRPQVYKVNINGGVPQRITWEGSQNQNADVSPDGKFLVLVSSNGGAQHIAK
CEEEECCCCCCCEEEEEEECCCCCCEEEECCCCCCCCCCCCCCCEEEEEECCCCHHHHHH
QDLETGAVQVLTDTLLDETPSIAPNGTMVIYSSTQGLGSVLQLVSTDGRFKARLPATDGQ
HHHHCCHHHHHHHHHHCCCCCCCCCCEEEEEECCCCHHHHHHHHCCCCCEEEECCCCCCC
VKFPAWSPYL
EECCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA