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The map label for this gene is ygdH [H]

Identifier: 218928201

GI number: 218928201

Start: 1173766

End: 1175130

Strand: Reverse

Name: ygdH [H]

Synonym: YPO1033

Alternate gene names: 218928201

Gene position: 1175130-1173766 (Counterclockwise)

Preceding gene: 218928202

Following gene: 218928200

Centisome position: 25.25

GC content: 46.3

Gene sequence:

>1365_bases
TTGATTACACATGTCAGCCCGCTCGGCTCAATGGATCTGTTATCACAGCTCGAAGTGGATATGCTCAAACGTACCGCCAG
CAGTGATTTGTACCGTTTATTCCGTAATTGTTCACTGGCTGTTCTCAATTCAGGTAGCCTGACCGATAACAGCAAAGAGT
TGTTATCTCGCAATGAAACCTTTGATATCAACGTGCTTCGCCGTGAGCGAGGAGTTAAACTCGAGTTGGTCAACCCACCA
GAACATGCGTTTGTTGACGGCAAAATTATTCGCTCATTACAAGCAAACCTGTTCGCGGTATTACGCGATATCTTATTTGT
CAATGGTCAAATCGTCAGTGCGAGCAACTTCCAGCATTTGAATATGGAGAGCTCCAGTCATTTGACTAACCTGGTCTTTT
CTATTTTACGTAATGCCCGTGCCCTACATATTGATGAAGAACCCAATATGGTCGTGTGCTGGGGAGGGCATTCAATTAAT
GAAACCGAGTATTTGTACGCCCGTAAAGTGGGCAGCCAACTGGGTTTGCGTGAATTAAATATCTGTACCGGCTGTGGTCC
GGGTGCCATGGAAGCCCCGATGAAAGGTGCCGCTGTCGGACATGCTCAGCAACATTATAAAAAAGGCCGTTTTATCGGCA
TGACAGAACCGTCCATTATCGCTGCAGAACCACCAAACCCTCTGGTTAATGAACTGGTTATCATGCCCGATATTGAGAAG
AGGCTGGAAGCCTTCGTCCGAATCGCTCATGGCATCATTATTTTCCCAGGTGGGGTGGGCACAGCAGAAGAATTACTCTA
TCTATTAGGGATTTTGATGAATCCGGAAAATAGTGAGCAAGTGCTGCCGCTGATTTTAACCGGGCCAAAAGAGAGTGCGG
ATTACTTCAAAGTGGTGGATGAGTTCATCATGAATACGCTGGGTGATGGCGCTCGTAAATACTATCAGATAATTATTGAT
GACCCAGACGAAGTCGCCCGTCAGATGAAGAAAGCGATGCCACTGGTGAAAGAGTATCGCCGTAATACCGGCGATGCTTA
TAGCTTCAACTGGTCTATTCGTATTGAACCAGATTTACAGCATCCGTTCGAACCAAACCATGAAAATATGGCTAATCTGG
ATCTGTCTCATAATCAACCACCGGAGAAACTGGCCGCCGCATTACGCCGGGCGTTTTCTGGGATTGTGGCAGGTAATGTC
AAGGAAGTGGGTATCCAGGCTATTGAAGCGCATGGGCCATTTAAACTGCATGGCGATCCGCAATTAATGAAGCAAATGGA
CCGCCTACTGCAAGATTTTATTGCTCAACATCGGATGAAGTTACCAGGTAGCGTCTATACACCTTGCTATGAAATTTGTA
GCTGA

Upstream 100 bases:

>100_bases
AAAGAAAGACAACGTTAAGGTTAATTACAGTATTTTACGGCCTTTTCTGCTGTCCTACCGTGATACACGGAATACCCCCC
TCAGGGGCAAAGGAGTCATT

Downstream 100 bases:

>100_bases
TGAATAGATAACTGTAGTTGATGAATAGATCAATTGAACCCAAAGTAATTGGCGTTGTAGTTGAGCAGCAAAAAATGACA
AATCTGCCAAGAGTAAATTT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 454; Mature: 454

Protein sequence:

>454_residues
MITHVSPLGSMDLLSQLEVDMLKRTASSDLYRLFRNCSLAVLNSGSLTDNSKELLSRNETFDINVLRRERGVKLELVNPP
EHAFVDGKIIRSLQANLFAVLRDILFVNGQIVSASNFQHLNMESSSHLTNLVFSILRNARALHIDEEPNMVVCWGGHSIN
ETEYLYARKVGSQLGLRELNICTGCGPGAMEAPMKGAAVGHAQQHYKKGRFIGMTEPSIIAAEPPNPLVNELVIMPDIEK
RLEAFVRIAHGIIIFPGGVGTAEELLYLLGILMNPENSEQVLPLILTGPKESADYFKVVDEFIMNTLGDGARKYYQIIID
DPDEVARQMKKAMPLVKEYRRNTGDAYSFNWSIRIEPDLQHPFEPNHENMANLDLSHNQPPEKLAAALRRAFSGIVAGNV
KEVGIQAIEAHGPFKLHGDPQLMKQMDRLLQDFIAQHRMKLPGSVYTPCYEICS

Sequences:

>Translated_454_residues
MITHVSPLGSMDLLSQLEVDMLKRTASSDLYRLFRNCSLAVLNSGSLTDNSKELLSRNETFDINVLRRERGVKLELVNPP
EHAFVDGKIIRSLQANLFAVLRDILFVNGQIVSASNFQHLNMESSSHLTNLVFSILRNARALHIDEEPNMVVCWGGHSIN
ETEYLYARKVGSQLGLRELNICTGCGPGAMEAPMKGAAVGHAQQHYKKGRFIGMTEPSIIAAEPPNPLVNELVIMPDIEK
RLEAFVRIAHGIIIFPGGVGTAEELLYLLGILMNPENSEQVLPLILTGPKESADYFKVVDEFIMNTLGDGARKYYQIIID
DPDEVARQMKKAMPLVKEYRRNTGDAYSFNWSIRIEPDLQHPFEPNHENMANLDLSHNQPPEKLAAALRRAFSGIVAGNV
KEVGIQAIEAHGPFKLHGDPQLMKQMDRLLQDFIAQHRMKLPGSVYTPCYEICS
>Mature_454_residues
MITHVSPLGSMDLLSQLEVDMLKRTASSDLYRLFRNCSLAVLNSGSLTDNSKELLSRNETFDINVLRRERGVKLELVNPP
EHAFVDGKIIRSLQANLFAVLRDILFVNGQIVSASNFQHLNMESSSHLTNLVFSILRNARALHIDEEPNMVVCWGGHSIN
ETEYLYARKVGSQLGLRELNICTGCGPGAMEAPMKGAAVGHAQQHYKKGRFIGMTEPSIIAAEPPNPLVNELVIMPDIEK
RLEAFVRIAHGIIIFPGGVGTAEELLYLLGILMNPENSEQVLPLILTGPKESADYFKVVDEFIMNTLGDGARKYYQIIID
DPDEVARQMKKAMPLVKEYRRNTGDAYSFNWSIRIEPDLQHPFEPNHENMANLDLSHNQPPEKLAAALRRAFSGIVAGNV
KEVGIQAIEAHGPFKLHGDPQLMKQMDRLLQDFIAQHRMKLPGSVYTPCYEICS

Specific function: Unknown

COG id: COG1611

COG function: function code R; Predicted Rossmann fold nucleotide-binding protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the LOG family [H]

Homologues:

Organism=Escherichia coli, GI1789159, Length=454, Percent_Identity=82.8193832599119, Blast_Score=787, Evalue=0.0,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR021826
- InterPro:   IPR005269 [H]

Pfam domain/function: PF11892 DUF3412; PF03641 Lysine_decarbox [H]

EC number: NA

Molecular weight: Translated: 50722; Mature: 50722

Theoretical pI: Translated: 6.35; Mature: 6.35

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MITHVSPLGSMDLLSQLEVDMLKRTASSDLYRLFRNCSLAVLNSGSLTDNSKELLSRNET
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHCCCCC
FDINVLRRERGVKLELVNPPEHAFVDGKIIRSLQANLFAVLRDILFVNGQIVSASNFQHL
EEEEEEECCCCCEEEEECCCCCHHCCHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCEEE
NMESSSHLTNLVFSILRNARALHIDEEPNMVVCWGGHSINETEYLYARKVGSQLGLRELN
CCCCHHHHHHHHHHHHCCCCEEEECCCCCEEEEECCCCCCCHHHHHHHHHHHHCCCCCEE
ICTGCGPGAMEAPMKGAAVGHAQQHYKKGRFIGMTEPSIIAAEPPNPLVNELVIMPDIEK
EECCCCCCCCCCCCCCCHHHHHHHHHHCCCEEECCCCCEEEECCCCHHHHCEEECCCHHH
RLEAFVRIAHGIIIFPGGVGTAEELLYLLGILMNPENSEQVLPLILTGPKESADYFKVVD
HHHHHHHHHCCEEEEECCCCCHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCHHHHHHHH
EFIMNTLGDGARKYYQIIIDDPDEVARQMKKAMPLVKEYRRNTGDAYSFNWSIRIEPDLQ
HHHHHHHCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEECCCCC
HPFEPNHENMANLDLSHNQPPEKLAAALRRAFSGIVAGNVKEVGIQAIEAHGPFKLHGDP
CCCCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHCCEEEECCCCEEECCCH
QLMKQMDRLLQDFIAQHRMKLPGSVYTPCYEICS
HHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHCC
>Mature Secondary Structure
MITHVSPLGSMDLLSQLEVDMLKRTASSDLYRLFRNCSLAVLNSGSLTDNSKELLSRNET
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHCCCCC
FDINVLRRERGVKLELVNPPEHAFVDGKIIRSLQANLFAVLRDILFVNGQIVSASNFQHL
EEEEEEECCCCCEEEEECCCCCHHCCHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCEEE
NMESSSHLTNLVFSILRNARALHIDEEPNMVVCWGGHSINETEYLYARKVGSQLGLRELN
CCCCHHHHHHHHHHHHCCCCEEEECCCCCEEEEECCCCCCCHHHHHHHHHHHHCCCCCEE
ICTGCGPGAMEAPMKGAAVGHAQQHYKKGRFIGMTEPSIIAAEPPNPLVNELVIMPDIEK
EECCCCCCCCCCCCCCCHHHHHHHHHHCCCEEECCCCCEEEECCCCHHHHCEEECCCHHH
RLEAFVRIAHGIIIFPGGVGTAEELLYLLGILMNPENSEQVLPLILTGPKESADYFKVVD
HHHHHHHHHCCEEEEECCCCCHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCHHHHHHHH
EFIMNTLGDGARKYYQIIIDDPDEVARQMKKAMPLVKEYRRNTGDAYSFNWSIRIEPDLQ
HHHHHHHCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEECCCCC
HPFEPNHENMANLDLSHNQPPEKLAAALRRAFSGIVAGNVKEVGIQAIEAHGPFKLHGDP
CCCCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHCCEEEECCCCEEECCCH
QLMKQMDRLLQDFIAQHRMKLPGSVYTPCYEICS
HHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]