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The map label for this gene is xni [H]

Identifier: 218928200

GI number: 218928200

Start: 1172751

End: 1173506

Strand: Reverse

Name: xni [H]

Synonym: YPO1032

Alternate gene names: 218928200

Gene position: 1173506-1172751 (Counterclockwise)

Preceding gene: 218928201

Following gene: 218928196

Centisome position: 25.22

GC content: 47.75

Gene sequence:

>756_bases
ATGCAAATACACCTTCTTATTGTCGATGCTCTTAATTTGATTCGCCGTATTCATGCGGTGCAGGGGTCACCTTGTGTTAA
GGCCTGCCAGCATGCACTGCAACAACTGATTCAACACAGCCAACCCAGCCATGCCGTTGCCGTTTTTGATGAAGATGACC
GCTCTGATAGCTGGCGACATCAATGTCTGCCAGATTACAAAGCTGGCCGCTCTCCCATGCCTGATAACCTGCAACAGGAA
ATGCCACTCATTCGCCAGGCATTTAATGAATTAGGGGTAGCATGCTGGCATTCACCCGGTAATGAAGCCGATGACTTAGC
CGCCACTCTGGTGGTAAAAGTTGCTGGAGCGGGCCATCAGGTAACCATCGTTTCTACCGACAAAGGCTATTGCCAGTTAT
TGGCTCCCAATATCCAAATTCGTGACTATTTCCAAAAGCGGTGGCTGGATATGCCGTTTGTGAAGCAGGAGTTTGGTGTA
TTGCCTCGTCAATTACCTGATTACTGGGGGCTGGCGGGGATCAGCAGCAGTAAAATTCCAGGTGTTGCAGGCGTTGGTGC
CAAAACCGCTACGCTGCTACTGCAACAAGCCGATACGTTGGAAGTGCTCTATCAGAATCTGGAATCAATACCGGAGAAAT
GGCGTAAAAAATTACAACAACACCAACAGATGGCGTTTACCTGCAAACAAATCGCCACGCTGAAAACGGACTTATTATTG
AGTGGCAATCTACAACAGTTACGTTTGAAAAAATAA

Upstream 100 bases:

>100_bases
GCTGCTGCAACGCCAAGTAAGAAGGGAATTCACTGGGCGACTAACGTTGCCCAATATTACTCGGGCTTAATGACGATTCA
GCCCTTACATAAAACAGGTT

Downstream 100 bases:

>100_bases
TATACGCATAAAAACTAAGGGGCCAATAGGCCCCTCAGACTGCTGACAAACCCCGATGACGCGATCTTGAACGGTGAGGA
TAGGCAGAGGAGTAAAGCGT

Product: exonuclease IX

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 251; Mature: 251

Protein sequence:

>251_residues
MQIHLLIVDALNLIRRIHAVQGSPCVKACQHALQQLIQHSQPSHAVAVFDEDDRSDSWRHQCLPDYKAGRSPMPDNLQQE
MPLIRQAFNELGVACWHSPGNEADDLAATLVVKVAGAGHQVTIVSTDKGYCQLLAPNIQIRDYFQKRWLDMPFVKQEFGV
LPRQLPDYWGLAGISSSKIPGVAGVGAKTATLLLQQADTLEVLYQNLESIPEKWRKKLQQHQQMAFTCKQIATLKTDLLL
SGNLQQLRLKK

Sequences:

>Translated_251_residues
MQIHLLIVDALNLIRRIHAVQGSPCVKACQHALQQLIQHSQPSHAVAVFDEDDRSDSWRHQCLPDYKAGRSPMPDNLQQE
MPLIRQAFNELGVACWHSPGNEADDLAATLVVKVAGAGHQVTIVSTDKGYCQLLAPNIQIRDYFQKRWLDMPFVKQEFGV
LPRQLPDYWGLAGISSSKIPGVAGVGAKTATLLLQQADTLEVLYQNLESIPEKWRKKLQQHQQMAFTCKQIATLKTDLLL
SGNLQQLRLKK
>Mature_251_residues
MQIHLLIVDALNLIRRIHAVQGSPCVKACQHALQQLIQHSQPSHAVAVFDEDDRSDSWRHQCLPDYKAGRSPMPDNLQQE
MPLIRQAFNELGVACWHSPGNEADDLAATLVVKVAGAGHQVTIVSTDKGYCQLLAPNIQIRDYFQKRWLDMPFVKQEFGV
LPRQLPDYWGLAGISSSKIPGVAGVGAKTATLLLQQADTLEVLYQNLESIPEKWRKKLQQHQQMAFTCKQIATLKTDLLL
SGNLQQLRLKK

Specific function: May have a role in processing of nucleic acids. It is probably not an exonuclease; metal-binding residues found in paralogs are missing [H]

COG id: COG0258

COG function: function code L; 5'-3' exonuclease (including N-terminal domain of PolI)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 5'-3' exonuclease domain [H]

Homologues:

Organism=Escherichia coli, GI226510970, Length=251, Percent_Identity=70.9163346613546, Blast_Score=387, Evalue=1e-109,
Organism=Escherichia coli, GI1790294, Length=263, Percent_Identity=33.0798479087452, Blast_Score=130, Evalue=1e-31,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020046
- InterPro:   IPR020045
- InterPro:   IPR002421
- InterPro:   IPR020047
- InterPro:   IPR008918
- InterPro:   IPR022895 [H]

Pfam domain/function: PF01367 5_3_exonuc; PF02739 5_3_exonuc_N [H]

EC number: 3.1.11.- [C]

Molecular weight: Translated: 28161; Mature: 28161

Theoretical pI: Translated: 8.38; Mature: 8.38

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.4 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
2.4 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQIHLLIVDALNLIRRIHAVQGSPCVKACQHALQQLIQHSQPSHAVAVFDEDDRSDSWRH
CEEEEEHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCHHH
QCLPDYKAGRSPMPDNLQQEMPLIRQAFNELGVACWHSPGNEADDLAATLVVKVAGAGHQ
HCCCCHHCCCCCCCCCHHHHHHHHHHHHHHHCEEEECCCCCCHHHHHHHHHHHCCCCCCE
VTIVSTDKGYCQLLAPNIQIRDYFQKRWLDMPFVKQEFGVLPRQLPDYWGLAGISSSKIP
EEEEECCCCEEEEECCCCHHHHHHHHHCCCCCHHHHHHCCCCHHCCHHHCCCCCCCCCCC
GVAGVGAKTATLLLQQADTLEVLYQNLESIPEKWRKKLQQHQQMAFTCKQIATLKTDLLL
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
SGNLQQLRLKK
CCCHHHHCCCC
>Mature Secondary Structure
MQIHLLIVDALNLIRRIHAVQGSPCVKACQHALQQLIQHSQPSHAVAVFDEDDRSDSWRH
CEEEEEHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCHHH
QCLPDYKAGRSPMPDNLQQEMPLIRQAFNELGVACWHSPGNEADDLAATLVVKVAGAGHQ
HCCCCHHCCCCCCCCCHHHHHHHHHHHHHHHCEEEECCCCCCHHHHHHHHHHHCCCCCCE
VTIVSTDKGYCQLLAPNIQIRDYFQKRWLDMPFVKQEFGVLPRQLPDYWGLAGISSSKIP
EEEEECCCCEEEEECCCCHHHHHHHHHCCCCCHHHHHHCCCCHHCCHHHCCCCCCCCCCC
GVAGVGAKTATLLLQQADTLEVLYQNLESIPEKWRKKLQQHQQMAFTCKQIATLKTDLLL
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
SGNLQQLRLKK
CCCHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA