Definition | Yersinia pestis CO92 chromosome, complete genome. |
---|---|
Accession | NC_003143 |
Length | 4,653,728 |
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The map label for this gene is kduD2 [H]
Identifier: 218928015
GI number: 218928015
Start: 918783
End: 919538
Strand: Direct
Name: kduD2 [H]
Synonym: YPO0839
Alternate gene names: 218928015
Gene position: 918783-919538 (Clockwise)
Preceding gene: 218928014
Following gene: 218928016
Centisome position: 19.74
GC content: 53.31
Gene sequence:
>756_bases ATGCAACCATTTGATTTGAATGGAAAAGTAGCAATTATCACCGGATGTAATACGGGGTTGGGCCAAGGCATGGCAATCGG CCTGGCAAAAGCCGGTGCAGATATTGTTGGTGTGGGAGTCGCTGAAGCCCCGGAAACCCAGGCACAGGTTGAAGCACTGG GGCGTAAATTCCACTTCATCACTGCTGACCTGATACAACAAAAAGACATTGATAGCATCGTCAGTCAGGCGGTGGAAGTG ATGGGGCATATTGATATTCTGATCAACAACGCCGGGATCATTCGTCGTCAGGACCTGCTGGAGTTTGGCAACAAAGATTG GGACGATGTGATCAATATTAACCAGAAAACCGTGTTCTTCCTGTCGCAAGCCGTGGCGAAACAGTTTGTGAAGCAGGGCA ACGGCGGCAAGATCATCAATATCGCCTCCATGTTGTCATTCCAGGGGGGGATCCGCGTGCCCTCTTACACCGCCAGTAAA TCCGCCGTCATGGGCTTAACCCGTGCATTGGCGACAGAGCTGTCGCAGTACAATATTAACGTAAACGCGATTGCGCCGGG TTATATGGCAACCGATAACACCGCCGCACTGCGCGCAGACACCGCCCGCAACGAGGCTATTTTAGAGCGGATCCCCGCGT CCCGTTGGGGAACACCGGATGATTTAGCGGGCCCGGCGATTTTCCTTTCGTCCTCTGCCAGCGACTATGTGACCGGGTAT ACATTAGCAGTGGATGGCGGCTGGCTGGCGCGTTAA
Upstream 100 bases:
>100_bases TCAACACATCTGCCTTCTGAAAAGTAACTCAATATCAGCATGGTGCCGCCGTTGTGATGGGCGGTAGGCATCGTGCGCCC TAATTATAGGAAGACATAAC
Downstream 100 bases:
>100_bases GTAAGGGAGCATCACATGAGCAATATGACACAGCAGACGCGTACTCAACAGGCGCGTGAAACAATGAAGCGGGTATATCG CTATCAGGCAGCAAACCAAA
Product: 2-deoxy-D-gluconate 3-dehydrogenase
Products: NA
Alternate protein names: 2-keto-3-deoxygluconate 5-dehydrogenase; 2-keto-3-deoxygluconate oxidoreductase; KDG oxidoreductase [H]
Number of amino acids: Translated: 251; Mature: 251
Protein sequence:
>251_residues MQPFDLNGKVAIITGCNTGLGQGMAIGLAKAGADIVGVGVAEAPETQAQVEALGRKFHFITADLIQQKDIDSIVSQAVEV MGHIDILINNAGIIRRQDLLEFGNKDWDDVININQKTVFFLSQAVAKQFVKQGNGGKIINIASMLSFQGGIRVPSYTASK SAVMGLTRALATELSQYNINVNAIAPGYMATDNTAALRADTARNEAILERIPASRWGTPDDLAGPAIFLSSSASDYVTGY TLAVDGGWLAR
Sequences:
>Translated_251_residues MQPFDLNGKVAIITGCNTGLGQGMAIGLAKAGADIVGVGVAEAPETQAQVEALGRKFHFITADLIQQKDIDSIVSQAVEV MGHIDILINNAGIIRRQDLLEFGNKDWDDVININQKTVFFLSQAVAKQFVKQGNGGKIINIASMLSFQGGIRVPSYTASK SAVMGLTRALATELSQYNINVNAIAPGYMATDNTAALRADTARNEAILERIPASRWGTPDDLAGPAIFLSSSASDYVTGY TLAVDGGWLAR >Mature_251_residues MQPFDLNGKVAIITGCNTGLGQGMAIGLAKAGADIVGVGVAEAPETQAQVEALGRKFHFITADLIQQKDIDSIVSQAVEV MGHIDILINNAGIIRRQDLLEFGNKDWDDVININQKTVFFLSQAVAKQFVKQGNGGKIINIASMLSFQGGIRVPSYTASK SAVMGLTRALATELSQYNINVNAIAPGYMATDNTAALRADTARNEAILERIPASRWGTPDDLAGPAIFLSSSASDYVTGY TLAVDGGWLAR
Specific function: Catalyzes the reduction of 2,5-diketo-3-deoxygluconate (DKII or 4,6-dihydroxy-2,5-dioxohexanoate) into 2-keto-3- deoxygluconate (KDG or 2-dehydro-3-deoxygluconate) with a concomitant oxidation of NADH [H]
COG id: COG1028
COG function: function code IQR; Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]
Homologues:
Organism=Homo sapiens, GI32483357, Length=249, Percent_Identity=32.1285140562249, Blast_Score=124, Evalue=8e-29, Organism=Homo sapiens, GI15277342, Length=255, Percent_Identity=31.7647058823529, Blast_Score=122, Evalue=2e-28, Organism=Homo sapiens, GI7705925, Length=250, Percent_Identity=30.4, Blast_Score=114, Evalue=8e-26, Organism=Homo sapiens, GI66933014, Length=252, Percent_Identity=29.7619047619048, Blast_Score=108, Evalue=5e-24, Organism=Homo sapiens, GI126723750, Length=252, Percent_Identity=31.3492063492063, Blast_Score=107, Evalue=1e-23, Organism=Homo sapiens, GI40254992, Length=240, Percent_Identity=28.75, Blast_Score=104, Evalue=9e-23, Organism=Homo sapiens, GI19923817, Length=257, Percent_Identity=26.8482490272374, Blast_Score=103, Evalue=2e-22, Organism=Homo sapiens, GI5031737, Length=245, Percent_Identity=28.5714285714286, Blast_Score=99, Evalue=5e-21, Organism=Homo sapiens, GI4504505, Length=258, Percent_Identity=26.3565891472868, Blast_Score=94, Evalue=1e-19, Organism=Homo sapiens, GI59889578, Length=195, Percent_Identity=31.7948717948718, Blast_Score=91, Evalue=1e-18, Organism=Homo sapiens, GI4503301, Length=255, Percent_Identity=31.3725490196078, Blast_Score=89, Evalue=5e-18, Organism=Homo sapiens, GI10190704, Length=252, Percent_Identity=30.1587301587302, Blast_Score=87, Evalue=1e-17, Organism=Homo sapiens, GI31542939, Length=204, Percent_Identity=32.843137254902, Blast_Score=85, Evalue=5e-17, Organism=Homo sapiens, GI4758504, Length=232, Percent_Identity=29.7413793103448, Blast_Score=82, Evalue=4e-16, Organism=Homo sapiens, GI33667109, Length=197, Percent_Identity=28.4263959390863, Blast_Score=82, Evalue=6e-16, Organism=Homo sapiens, GI109715829, Length=246, Percent_Identity=30.4878048780488, Blast_Score=82, Evalue=7e-16, Organism=Homo sapiens, GI20149619, Length=211, Percent_Identity=29.3838862559242, Blast_Score=80, Evalue=1e-15, Organism=Homo sapiens, GI209862901, Length=212, Percent_Identity=29.2452830188679, Blast_Score=79, Evalue=4e-15, Organism=Homo sapiens, GI19923983, Length=212, Percent_Identity=29.2452830188679, Blast_Score=79, Evalue=4e-15, Organism=Homo sapiens, GI126723191, Length=182, Percent_Identity=29.6703296703297, Blast_Score=76, Evalue=3e-14, Organism=Homo sapiens, GI142976729, Length=218, Percent_Identity=26.1467889908257, Blast_Score=74, Evalue=1e-13, Organism=Homo sapiens, GI224922801, Length=174, Percent_Identity=31.6091954022989, Blast_Score=72, Evalue=6e-13, Organism=Homo sapiens, GI210032110, Length=207, Percent_Identity=25.1207729468599, Blast_Score=71, Evalue=1e-12, Organism=Homo sapiens, GI4503817, Length=192, Percent_Identity=27.6041666666667, Blast_Score=69, Evalue=3e-12, Organism=Homo sapiens, GI83715985, Length=183, Percent_Identity=29.5081967213115, Blast_Score=69, Evalue=4e-12, Organism=Homo sapiens, GI7657478, Length=204, Percent_Identity=28.4313725490196, Blast_Score=67, Evalue=1e-11, Organism=Homo sapiens, GI40254986, Length=192, Percent_Identity=28.125, Blast_Score=67, Evalue=2e-11, Organism=Homo sapiens, GI225579078, Length=203, Percent_Identity=27.5862068965517, Blast_Score=65, Evalue=4e-11, Organism=Homo sapiens, GI302344755, Length=110, Percent_Identity=33.6363636363636, Blast_Score=65, Evalue=5e-11, Organism=Escherichia coli, GI1789208, Length=251, Percent_Identity=68.1274900398406, Blast_Score=360, Evalue=1e-101, Organism=Escherichia coli, GI87082160, Length=252, Percent_Identity=46.4285714285714, Blast_Score=223, Evalue=1e-59, Organism=Escherichia coli, GI1790717, Length=249, Percent_Identity=44.1767068273092, Blast_Score=193, Evalue=8e-51, Organism=Escherichia coli, GI1787335, Length=245, Percent_Identity=34.6938775510204, Blast_Score=150, Evalue=1e-37, Organism=Escherichia coli, GI1788459, Length=244, Percent_Identity=33.6065573770492, Blast_Score=134, Evalue=5e-33, Organism=Escherichia coli, GI87082100, Length=255, Percent_Identity=33.7254901960784, Blast_Score=125, Evalue=3e-30, Organism=Escherichia coli, GI1787905, Length=244, Percent_Identity=34.4262295081967, Blast_Score=115, Evalue=2e-27, Organism=Escherichia coli, GI1789378, Length=251, Percent_Identity=28.6852589641434, Blast_Score=99, Evalue=3e-22, Organism=Escherichia coli, GI1786812, Length=254, Percent_Identity=26.7716535433071, Blast_Score=89, Evalue=4e-19, Organism=Escherichia coli, GI2367365, Length=250, Percent_Identity=28.4, Blast_Score=78, Evalue=5e-16, Organism=Escherichia coli, GI2367175, Length=248, Percent_Identity=27.4193548387097, Blast_Score=77, Evalue=9e-16, Organism=Escherichia coli, GI1789057, Length=257, Percent_Identity=24.124513618677, Blast_Score=74, Evalue=7e-15, Organism=Escherichia coli, GI1787526, Length=252, Percent_Identity=26.5873015873016, Blast_Score=70, Evalue=1e-13, Organism=Escherichia coli, GI1787820, Length=241, Percent_Identity=24.4813278008299, Blast_Score=62, Evalue=3e-11, Organism=Caenorhabditis elegans, GI25147288, Length=244, Percent_Identity=34.0163934426229, Blast_Score=130, Evalue=6e-31, Organism=Caenorhabditis elegans, GI17555706, Length=245, Percent_Identity=33.0612244897959, Blast_Score=130, Evalue=7e-31, Organism=Caenorhabditis elegans, GI17561402, Length=254, Percent_Identity=32.2834645669291, Blast_Score=114, Evalue=4e-26, Organism=Caenorhabditis elegans, GI17560676, Length=250, Percent_Identity=28.8, Blast_Score=114, Evalue=4e-26, Organism=Caenorhabditis elegans, GI71994600, Length=253, Percent_Identity=33.9920948616601, Blast_Score=111, Evalue=4e-25, Organism=Caenorhabditis elegans, GI115534694, Length=252, Percent_Identity=30.1587301587302, Blast_Score=107, Evalue=8e-24, Organism=Caenorhabditis elegans, GI71994604, Length=247, Percent_Identity=31.5789473684211, Blast_Score=105, Evalue=2e-23, Organism=Caenorhabditis elegans, GI17559104, Length=257, Percent_Identity=31.5175097276265, Blast_Score=103, Evalue=8e-23, Organism=Caenorhabditis elegans, GI17562906, Length=260, Percent_Identity=31.1538461538462, Blast_Score=102, Evalue=2e-22, Organism=Caenorhabditis elegans, GI17562990, Length=261, Percent_Identity=30.6513409961686, Blast_Score=102, Evalue=3e-22, Organism=Caenorhabditis elegans, GI17551412, Length=267, Percent_Identity=29.2134831460674, Blast_Score=101, Evalue=4e-22, Organism=Caenorhabditis elegans, GI17562908, Length=260, Percent_Identity=30.3846153846154, Blast_Score=100, Evalue=5e-22, Organism=Caenorhabditis elegans, GI17560150, Length=263, Percent_Identity=30.0380228136882, Blast_Score=100, Evalue=1e-21, Organism=Caenorhabditis elegans, GI17538480, Length=262, Percent_Identity=29.3893129770992, Blast_Score=99, Evalue=2e-21, Organism=Caenorhabditis elegans, GI17564282, Length=191, Percent_Identity=31.9371727748691, Blast_Score=97, Evalue=6e-21, Organism=Caenorhabditis elegans, GI17560220, Length=265, Percent_Identity=29.4339622641509, Blast_Score=97, Evalue=8e-21, Organism=Caenorhabditis elegans, GI17562910, Length=257, Percent_Identity=28.4046692607004, Blast_Score=95, Evalue=3e-20, Organism=Caenorhabditis elegans, GI17531453, Length=260, Percent_Identity=30, Blast_Score=93, Evalue=2e-19, Organism=Caenorhabditis elegans, GI17563726, Length=259, Percent_Identity=30.8880308880309, Blast_Score=92, Evalue=2e-19, Organism=Caenorhabditis elegans, GI17544670, Length=262, Percent_Identity=28.6259541984733, Blast_Score=91, Evalue=5e-19, Organism=Caenorhabditis elegans, GI193203115, Length=191, Percent_Identity=30.8900523560209, Blast_Score=89, Evalue=2e-18, Organism=Caenorhabditis elegans, GI17568967, Length=189, Percent_Identity=31.2169312169312, Blast_Score=89, Evalue=3e-18, Organism=Caenorhabditis elegans, GI17538486, Length=258, Percent_Identity=29.4573643410853, Blast_Score=88, Evalue=5e-18, Organism=Caenorhabditis elegans, GI193203117, Length=192, Percent_Identity=30.2083333333333, Blast_Score=87, Evalue=9e-18, Organism=Caenorhabditis elegans, GI72000259, Length=266, Percent_Identity=28.5714285714286, Blast_Score=86, Evalue=2e-17, Organism=Caenorhabditis elegans, GI17562904, Length=261, Percent_Identity=29.1187739463602, Blast_Score=83, Evalue=1e-16, Organism=Caenorhabditis elegans, GI193204405, Length=263, Percent_Identity=28.1368821292776, Blast_Score=82, Evalue=2e-16, Organism=Caenorhabditis elegans, GI17560332, Length=259, Percent_Identity=28.957528957529, Blast_Score=81, Evalue=5e-16, Organism=Caenorhabditis elegans, GI17565030, Length=258, Percent_Identity=27.906976744186, Blast_Score=81, Evalue=6e-16, Organism=Caenorhabditis elegans, GI17538182, Length=251, Percent_Identity=30.2788844621514, Blast_Score=79, Evalue=2e-15, Organism=Caenorhabditis elegans, GI17536025, Length=259, Percent_Identity=27.027027027027, Blast_Score=79, Evalue=2e-15, Organism=Caenorhabditis elegans, GI17536651, Length=257, Percent_Identity=26.8482490272374, Blast_Score=77, Evalue=8e-15, Organism=Caenorhabditis elegans, GI17561272, Length=261, Percent_Identity=27.9693486590038, Blast_Score=74, Evalue=6e-14, Organism=Caenorhabditis elegans, GI17508651, Length=257, Percent_Identity=26.4591439688716, Blast_Score=73, Evalue=1e-13, Organism=Caenorhabditis elegans, GI71982365, Length=190, Percent_Identity=27.8947368421053, Blast_Score=65, Evalue=3e-11, Organism=Caenorhabditis elegans, GI17508895, Length=192, Percent_Identity=26.5625, Blast_Score=64, Evalue=5e-11, Organism=Saccharomyces cerevisiae, GI6324126, Length=259, Percent_Identity=28.957528957529, Blast_Score=81, Evalue=2e-16, Organism=Saccharomyces cerevisiae, GI6322861, Length=187, Percent_Identity=29.9465240641711, Blast_Score=78, Evalue=1e-15, Organism=Saccharomyces cerevisiae, GI6322226, Length=214, Percent_Identity=27.5700934579439, Blast_Score=64, Evalue=2e-11, Organism=Saccharomyces cerevisiae, GI6319635, Length=218, Percent_Identity=27.5229357798165, Blast_Score=64, Evalue=3e-11, Organism=Saccharomyces cerevisiae, GI6323882, Length=195, Percent_Identity=29.2307692307692, Blast_Score=62, Evalue=7e-11, Organism=Drosophila melanogaster, GI24639444, Length=248, Percent_Identity=32.258064516129, Blast_Score=124, Evalue=7e-29, Organism=Drosophila melanogaster, GI21355319, Length=249, Percent_Identity=30.1204819277108, Blast_Score=119, Evalue=2e-27, Organism=Drosophila melanogaster, GI23397609, Length=250, Percent_Identity=30.8, Blast_Score=114, Evalue=8e-26, Organism=Drosophila melanogaster, GI21357041, Length=249, Percent_Identity=31.7269076305221, Blast_Score=108, Evalue=3e-24, Organism=Drosophila melanogaster, GI28571526, Length=249, Percent_Identity=30.9236947791165, Blast_Score=105, Evalue=3e-23, Organism=Drosophila melanogaster, GI24643142, Length=248, Percent_Identity=30.241935483871, Blast_Score=103, Evalue=8e-23, Organism=Drosophila melanogaster, GI24644339, Length=254, Percent_Identity=29.1338582677165, Blast_Score=103, Evalue=1e-22, Organism=Drosophila melanogaster, GI17737361, Length=228, Percent_Identity=32.0175438596491, Blast_Score=92, Evalue=3e-19, Organism=Drosophila melanogaster, GI24644337, Length=251, Percent_Identity=29.8804780876494, Blast_Score=86, Evalue=3e-17, Organism=Drosophila melanogaster, GI18859837, Length=207, Percent_Identity=30.4347826086957, Blast_Score=85, Evalue=5e-17, Organism=Drosophila melanogaster, GI24649181, Length=200, Percent_Identity=29, Blast_Score=81, Evalue=5e-16, Organism=Drosophila melanogaster, GI24640492, Length=216, Percent_Identity=29.6296296296296, Blast_Score=81, Evalue=5e-16, Organism=Drosophila melanogaster, GI21357673, Length=218, Percent_Identity=29.3577981651376, Blast_Score=81, Evalue=8e-16, Organism=Drosophila melanogaster, GI21358495, Length=195, Percent_Identity=30.2564102564103, Blast_Score=80, Evalue=1e-15, Organism=Drosophila melanogaster, GI24584748, Length=192, Percent_Identity=27.0833333333333, Blast_Score=71, Evalue=7e-13, Organism=Drosophila melanogaster, GI161076933, Length=192, Percent_Identity=27.0833333333333, Blast_Score=71, Evalue=8e-13, Organism=Drosophila melanogaster, GI24580925, Length=199, Percent_Identity=28.1407035175879, Blast_Score=69, Evalue=3e-12, Organism=Drosophila melanogaster, GI28571387, Length=195, Percent_Identity=26.6666666666667, Blast_Score=67, Evalue=1e-11, Organism=Drosophila melanogaster, GI17647419, Length=232, Percent_Identity=22.4137931034483, Blast_Score=65, Evalue=3e-11, Organism=Drosophila melanogaster, GI281364892, Length=212, Percent_Identity=26.4150943396226, Blast_Score=65, Evalue=3e-11, Organism=Drosophila melanogaster, GI24586328, Length=204, Percent_Identity=26.4705882352941, Blast_Score=65, Evalue=5e-11, Organism=Drosophila melanogaster, GI24584744, Length=201, Percent_Identity=25.8706467661692, Blast_Score=65, Evalue=6e-11, Organism=Drosophila melanogaster, GI28574402, Length=201, Percent_Identity=25.8706467661692, Blast_Score=64, Evalue=7e-11, Organism=Drosophila melanogaster, GI24581726, Length=201, Percent_Identity=26.865671641791, Blast_Score=64, Evalue=1e-10,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR011286 - InterPro: IPR002198 - InterPro: IPR002347 - InterPro: IPR016040 - InterPro: IPR020904 [H]
Pfam domain/function: PF00106 adh_short [H]
EC number: =1.1.1.127 [H]
Molecular weight: Translated: 26629; Mature: 26629
Theoretical pI: Translated: 5.01; Mature: 5.01
Prosite motif: PS00061 ADH_SHORT
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MQPFDLNGKVAIITGCNTGLGQGMAIGLAKAGADIVGVGVAEAPETQAQVEALGRKFHFI CCCCCCCCCEEEEEECCCCCCCCEEEEHHHCCCCEEEECCCCCCCHHHHHHHHHHHHEEE TADLIQQKDIDSIVSQAVEVMGHIDILINNAGIIRRQDLLEFGNKDWDDVININQKTVFF EHHHHHHCCHHHHHHHHHHHHHCEEEEECCCCCEEHHHHHHHCCCCHHHHHCCCCHHHHH LSQAVAKQFVKQGNGGKIINIASMLSFQGGIRVPSYTASKSAVMGLTRALATELSQYNIN HHHHHHHHHHHCCCCCCEEEHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCEE VNAIAPGYMATDNTAALRADTARNEAILERIPASRWGTPDDLAGPAIFLSSSASDYVTGY EEEECCCEEECCCCCEEEECCHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCCEEEE TLAVDGGWLAR EEEECCCCCCC >Mature Secondary Structure MQPFDLNGKVAIITGCNTGLGQGMAIGLAKAGADIVGVGVAEAPETQAQVEALGRKFHFI CCCCCCCCCEEEEEECCCCCCCCEEEEHHHCCCCEEEECCCCCCCHHHHHHHHHHHHEEE TADLIQQKDIDSIVSQAVEVMGHIDILINNAGIIRRQDLLEFGNKDWDDVININQKTVFF EHHHHHHCCHHHHHHHHHHHHHCEEEEECCCCCEEHHHHHHHCCCCHHHHHCCCCHHHHH LSQAVAKQFVKQGNGGKIINIASMLSFQGGIRVPSYTASKSAVMGLTRALATELSQYNIN HHHHHHHHHHHCCCCCCEEEHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCEE VNAIAPGYMATDNTAALRADTARNEAILERIPASRWGTPDDLAGPAIFLSSSASDYVTGY EEEECCCEEECCCCCEEEECCHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCCEEEE TLAVDGGWLAR EEEECCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9278503; 2836407; 1766386 [H]