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The map label for this gene is araP [H]

Identifier: 218927807

GI number: 218927807

Start: 673893

End: 674774

Strand: Direct

Name: araP [H]

Synonym: YPO0613

Alternate gene names: 218927807

Gene position: 673893-674774 (Clockwise)

Preceding gene: 218927806

Following gene: 218927808

Centisome position: 14.48

GC content: 46.94

Gene sequence:

>882_bases
GTGAAAAATAAAAATGTGATGATGGGCTACCTGTTTATTGCGCCCTGGATTATTTATTTCCTGGTTTTTATTTTATATCC
CTTTTTTCTCTCTTTTCAGAACAGCTTTCTGGATATCAACGTATTGAGCCCAGAGAGTACCCAATTTGTTGGCTTGAACA
ACTGGATTAGCGTTTCTAGCGACGAGCTATTTTGGCGTTCGCTGTTCAACGTGATCTTTAACCAAGTCATCTTTGTCCTA
CTCAGTTTCGTACTGGCAATGGGTATGGCGCTGTTGCTGCACGAAATCACCCACTTCGGCGGCTTGTTCCGTACCATCAT
GTTTATTCCGGTTATCACTTCGATCACCGTGGCGATGATTATCTTTAATTTTCTCTCCAGCCCTGCAGGGCCGGTACAGA
GTTTGCTGTTGGAATGGGGAGTGCTCGACGCGCCAGTGTTCTGGAAGTTCGAGCGCTGGTTGCCGATGCCGCTGATCGCC
GTATTCAGCACCTGGAAGTGGTTTGGTATCCAAATGATCATCTTTTTGGGCGGCATTGCCGGGATCAGTAAGTCGCTGTA
TGAGGCGGCTGATATTGATGGTGCTTCCTGGCGCCGGAAAACCTGGAGCATTACGCTACCCCTGCTGAAACCGCAGATTA
TCTTTGTCATGACGATGAATATTATTAACGGTATGCAGATGTTTATTGAAGTGCTGATGAACTTCGATCTTCACGGTGGC
CCCTATAACGCGGCCCTGACACCGGTACTCTATCTGTATAAAACCGGTTTCTCGGATATGAAGATGGGCACCGCCTCAAC
CATTGGCCTGCTGCTGGCTGCGGTTATCTATATTTTCACCATGCTGCAATTGAAATTTACTCAGGAAAAGGAGCACAGCT
AA

Upstream 100 bases:

>100_bases
TTGCCACCTCGGCACAGGCCGCACGCCAACTGCTCAATGAACACTGAGCCATGCACGCAGCGACCCGGTATCGATGCAGG
TATTCCCTTAAGGAGCCGAT

Downstream 100 bases:

>100_bases
TGCGCATCAGCAAAAAAAATCTGTTGATTTATAGCCTGTTGATCATCATCAGCCTGATCGTGCTGTATCCGTTTTTCTTT
ATGATCATGAATTCGTTTAA

Product: putative permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 293; Mature: 293

Protein sequence:

>293_residues
MKNKNVMMGYLFIAPWIIYFLVFILYPFFLSFQNSFLDINVLSPESTQFVGLNNWISVSSDELFWRSLFNVIFNQVIFVL
LSFVLAMGMALLLHEITHFGGLFRTIMFIPVITSITVAMIIFNFLSSPAGPVQSLLLEWGVLDAPVFWKFERWLPMPLIA
VFSTWKWFGIQMIIFLGGIAGISKSLYEAADIDGASWRRKTWSITLPLLKPQIIFVMTMNIINGMQMFIEVLMNFDLHGG
PYNAALTPVLYLYKTGFSDMKMGTASTIGLLLAAVIYIFTMLQLKFTQEKEHS

Sequences:

>Translated_293_residues
MKNKNVMMGYLFIAPWIIYFLVFILYPFFLSFQNSFLDINVLSPESTQFVGLNNWISVSSDELFWRSLFNVIFNQVIFVL
LSFVLAMGMALLLHEITHFGGLFRTIMFIPVITSITVAMIIFNFLSSPAGPVQSLLLEWGVLDAPVFWKFERWLPMPLIA
VFSTWKWFGIQMIIFLGGIAGISKSLYEAADIDGASWRRKTWSITLPLLKPQIIFVMTMNIINGMQMFIEVLMNFDLHGG
PYNAALTPVLYLYKTGFSDMKMGTASTIGLLLAAVIYIFTMLQLKFTQEKEHS
>Mature_293_residues
MKNKNVMMGYLFIAPWIIYFLVFILYPFFLSFQNSFLDINVLSPESTQFVGLNNWISVSSDELFWRSLFNVIFNQVIFVL
LSFVLAMGMALLLHEITHFGGLFRTIMFIPVITSITVAMIIFNFLSSPAGPVQSLLLEWGVLDAPVFWKFERWLPMPLIA
VFSTWKWFGIQMIIFLGGIAGISKSLYEAADIDGASWRRKTWSITLPLLKPQIIFVMTMNIINGMQMFIEVLMNFDLHGG
PYNAALTPVLYLYKTGFSDMKMGTASTIGLLLAAVIYIFTMLQLKFTQEKEHS

Specific function: Part of the binding-protein-dependent transport system for L-arabinose. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG1175

COG function: function code G; ABC-type sugar transport systems, permease components

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1789861, Length=292, Percent_Identity=24.6575342465753, Blast_Score=90, Evalue=2e-19,
Organism=Escherichia coli, GI1787570, Length=271, Percent_Identity=26.9372693726937, Blast_Score=83, Evalue=2e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 33492; Mature: 33492

Theoretical pI: Translated: 7.81; Mature: 7.81

Prosite motif: PS00142 ZINC_PROTEASE ; PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
5.8 %Met     (Translated Protein)
5.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
5.8 %Met     (Mature Protein)
5.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKNKNVMMGYLFIAPWIIYFLVFILYPFFLSFQNSFLDINVLSPESTQFVGLNNWISVSS
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCEEEECCCCEECCC
DELFWRSLFNVIFNQVIFVLLSFVLAMGMALLLHEITHFGGLFRTIMFIPVITSITVAMI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IFNFLSSPAGPVQSLLLEWGVLDAPVFWKFERWLPMPLIAVFSTWKWFGIQMIIFLGGIA
HHHHHCCCCCHHHHHHHHHCCCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
GISKSLYEAADIDGASWRRKTWSITLPLLKPQIIFVMTMNIINGMQMFIEVLMNFDLHGG
HHHHHHHHHHCCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
PYNAALTPVLYLYKTGFSDMKMGTASTIGLLLAAVIYIFTMLQLKFTQEKEHS
CCCHHHHHHHHHHHCCCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MKNKNVMMGYLFIAPWIIYFLVFILYPFFLSFQNSFLDINVLSPESTQFVGLNNWISVSS
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCEEEECCCCEECCC
DELFWRSLFNVIFNQVIFVLLSFVLAMGMALLLHEITHFGGLFRTIMFIPVITSITVAMI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IFNFLSSPAGPVQSLLLEWGVLDAPVFWKFERWLPMPLIAVFSTWKWFGIQMIIFLGGIA
HHHHHCCCCCHHHHHHHHHCCCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
GISKSLYEAADIDGASWRRKTWSITLPLLKPQIIFVMTMNIINGMQMFIEVLMNFDLHGG
HHHHHHHHHHCCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
PYNAALTPVLYLYKTGFSDMKMGTASTIGLLLAAVIYIFTMLQLKFTQEKEHS
CCCHHHHHHHHHHHCCCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11058132 [H]