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The map label for this gene is yscR [H]

Identifier: 218927477

GI number: 218927477

Start: 270664

End: 271314

Strand: Direct

Name: yscR [H]

Synonym: YPO0270

Alternate gene names: 218927477

Gene position: 270664-271314 (Clockwise)

Preceding gene: 218927476

Following gene: 218927478

Centisome position: 5.82

GC content: 46.39

Gene sequence:

>651_bases
ATGGAATTACTGAATTCATCCTATCAATTGATCGCCCTGCTTTTCATGCTGTCCGTGTTGCCTTTACTGGTGGTCATGGG
GACCGCATTCCTTAAGCTATCCGTGGTTTTTTCGTTGTTACGCAATGCGCTGGGTGTTCAACAAGTGCCACCGAATATTG
CCATTTACGGGCTGGCGCTGGTGCTGACTATTTTTATCATGGCACCGGTTGGTTTAGATGTTCAGGCGCGCTTGCAAAAT
GAAGAGCTGTCCAATGACATCGGCGCATTAGCGCACCAAATTGATCAAAATGCGCTGGTGCCCTACCGCGATTTTTTACA
GCGCAATACCGATATTGAGCAAGTCACTTTTTTTAACGACATTGTGCAGAATAAGTGGCCTGAGCGTTACCGCGATAGCG
TCAAACCCGATTCACTGCTGATATTAATGCCCGCCTTTACCCTCAGTCAGCTTAATGAAGCGTTTAAAATCGGCCTGTTA
CTTTTTTTACCGTTTGTCGCCATCGATTTAATTGTATCCAACATTTTGCTGGCGATGGGCATGATGATGGTGTCACCCAT
GACCCTGTCATTGCCGTTTAAACTGTTGGTTTTCGTCCTGGTGGATGGCTGGTCATTGGTTCTCGGACAGCTTGTAGGTT
CCTATTTATGA

Upstream 100 bases:

>100_bases
CCTGAAAGGGGCGGGGGACAAGACTGTCCATCTTGTTTTTATGCGAAACAGCTTACTTTTTATCTTATCTGAAACAGATG
ACTTATATGAAACAGATCAC

Downstream 100 bases:

>100_bases
ACAACCATATGAGTAGCTACCACGAGAATGCCATCATTGTTCATCTGGCCACTGAGTTGTTATGGCTGGTTTTACTCCTC
TCTCTGCCCGTAGTCGTGGT

Product: type III secretion system protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 216; Mature: 216

Protein sequence:

>216_residues
MELLNSSYQLIALLFMLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQARLQN
EELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVKPDSLLILMPAFTLSQLNEAFKIGLL
LFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLLVFVLVDGWSLVLGQLVGSYL

Sequences:

>Translated_216_residues
MELLNSSYQLIALLFMLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQARLQN
EELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVKPDSLLILMPAFTLSQLNEAFKIGLL
LFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLLVFVLVDGWSLVLGQLVGSYL
>Mature_216_residues
MELLNSSYQLIALLFMLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQARLQN
EELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVKPDSLLILMPAFTLSQLNEAFKIGLL
LFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKLLVFVLVDGWSLVLGQLVGSYL

Specific function: Plays A Role In The Flagellum-Specific Transport System. [C]

COG id: COG4790

COG function: function code U; Type III secretory pathway, component EscR

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the fliP/mopC/spaP family [H]

Homologues:

Organism=Escherichia coli, GI1788259, Length=207, Percent_Identity=39.6135265700483, Blast_Score=145, Evalue=2e-36,

Paralogues:

None

Copy number: 10-20 (rich media) [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005838
- InterPro:   IPR005773 [H]

Pfam domain/function: PF00813 FliP [H]

EC number: NA

Molecular weight: Translated: 24069; Mature: 24069

Theoretical pI: Translated: 4.47; Mature: 4.47

Prosite motif: PS01060 FLIP_1 ; PS01061 FLIP_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.6 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.6 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MELLNSSYQLIALLFMLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLAL
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHH
VLTIFIMAPVGLDVQARLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFND
HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHCCCCHHHHHHHHH
IVQNKWPERYRDSVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMG
HHHCCCCHHHHHCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
MMMVSPMTLSLPFKLLVFVLVDGWSLVLGQLVGSYL
HHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MELLNSSYQLIALLFMLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLAL
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHH
VLTIFIMAPVGLDVQARLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFND
HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHCCCCHHHHHHHHH
IVQNKWPERYRDSVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMG
HHHCCCCHHHHHCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
MMMVSPMTLSLPFKLLVFVLVDGWSLVLGQLVGSYL
HHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11677609 [H]