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The map label for this gene is ssaQ [H]

Identifier: 218927476

GI number: 218927476

Start: 269617

End: 270537

Strand: Direct

Name: ssaQ [H]

Synonym: YPO0269

Alternate gene names: 218927476

Gene position: 269617-270537 (Clockwise)

Preceding gene: 218927475

Following gene: 218927477

Centisome position: 5.79

GC content: 54.4

Gene sequence:

>921_bases
TTGATCGGGAGTGGCCGGCAGACAGCAGGGGTGTCGGTGGCCTTGACGGAGATTGACGGTGAGGGCGTTTATCTGCCACT
GCATTATGGCGGCCAAGAGTGTGGGTTGTGGTTATCACAATCCTGTTGGCAGCACTGGCTGAACACGACGTTGGCAACCG
ATAACCCCCAGTTGTTGGCCGCAGAGTTAGTGATCGCCATGGCTAATTGGGCCGTCACCCCATTGTTAGCGCTGTTTACC
GATCTGGTGGTATTGGCCGAGTCACCACAGAAGAGGTCACTACCAAAGCAGTGGGCGGTGACGGTGGCTTTCGAGCTGGA
GGGACAGCCGATTATCGGTGTGTTACAGGATTGGCCGCAGGCGGCATTGGCCGACACTTTGTCTCATTGGCCGTGCGAAG
CGGTCACCGCCCCTGATTTGCTTTGGCAATCTGGATTGGTGGCGGGTTGGTGCCACTTATCATTGCGTCAATTACAGCAG
TTAAGGCCGGGCGAGGGTTTACGCCTCTCTATGGCGGCGGAATTGGATAAAGAAGCGTGCTGGTTATGGCATCACGCATC
GCCACAAATTTATATCAAGCTAGAGGGTGGGAACAGAATGACAATTCAACAGATTAATGAAGCGAGTGACCCGCTGGCCT
GCGGCAGTCGCGCTGAATCACCGCCTCTGGCGGCGGTACAACTTGAGGATTTACCGCAAACGCTGGTGATGGAAATTGGC
CGTTTGACCTTGCCTCTGGGGGAGATAAAACAACTCGCGGTTGGTCAGACGCTGGCGTGCCAAACCCACTGTTATGGCGA
GGTGAATATCTGCCTGAATGGGCAATCCGTTGGCCGTGGCAGTTTACTCCGGTGCGATGAAAAACTGGTGGTCAGAATTG
CACAATGGGGATTACAAAACGGCGAAAATATCATGGAATGA

Upstream 100 bases:

>100_bases
AACCGCTGGCAGCGGCAACTGCATCAGTTAGGGTTCCCGTGTTTACTGGAGGTCACCTGTGCTGACGAATCTGACGCCTG
AGTTACGCGCCCTTAGCACC

Downstream 100 bases:

>100_bases
CAAGATTGAGGTGAACACCCGATACCCCTGAAAGGGGCGGGGGACAAGACTGTCCATCTTGTTTTTATGCGAAACAGCTT
ACTTTTTATCTTATCTGAAA

Product: type III secretion system protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 306; Mature: 306

Protein sequence:

>306_residues
MIGSGRQTAGVSVALTEIDGEGVYLPLHYGGQECGLWLSQSCWQHWLNTTLATDNPQLLAAELVIAMANWAVTPLLALFT
DLVVLAESPQKRSLPKQWAVTVAFELEGQPIIGVLQDWPQAALADTLSHWPCEAVTAPDLLWQSGLVAGWCHLSLRQLQQ
LRPGEGLRLSMAAELDKEACWLWHHASPQIYIKLEGGNRMTIQQINEASDPLACGSRAESPPLAAVQLEDLPQTLVMEIG
RLTLPLGEIKQLAVGQTLACQTHCYGEVNICLNGQSVGRGSLLRCDEKLVVRIAQWGLQNGENIME

Sequences:

>Translated_306_residues
MIGSGRQTAGVSVALTEIDGEGVYLPLHYGGQECGLWLSQSCWQHWLNTTLATDNPQLLAAELVIAMANWAVTPLLALFT
DLVVLAESPQKRSLPKQWAVTVAFELEGQPIIGVLQDWPQAALADTLSHWPCEAVTAPDLLWQSGLVAGWCHLSLRQLQQ
LRPGEGLRLSMAAELDKEACWLWHHASPQIYIKLEGGNRMTIQQINEASDPLACGSRAESPPLAAVQLEDLPQTLVMEIG
RLTLPLGEIKQLAVGQTLACQTHCYGEVNICLNGQSVGRGSLLRCDEKLVVRIAQWGLQNGENIME
>Mature_306_residues
MIGSGRQTAGVSVALTEIDGEGVYLPLHYGGQECGLWLSQSCWQHWLNTTLATDNPQLLAAELVIAMANWAVTPLLALFT
DLVVLAESPQKRSLPKQWAVTVAFELEGQPIIGVLQDWPQAALADTLSHWPCEAVTAPDLLWQSGLVAGWCHLSLRQLQQ
LRPGEGLRLSMAAELDKEACWLWHHASPQIYIKLEGGNRMTIQQINEASDPLACGSRAESPPLAAVQLEDLPQTLVMEIG
RLTLPLGEIKQLAVGQTLACQTHCYGEVNICLNGQSVGRGSLLRCDEKLVVRIAQWGLQNGENIME

Specific function: Part of a type III secretion system [H]

COG id: COG1886

COG function: function code NU; Flagellar motor switch/type III secretory pathway protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the FliN/MopA/SpaO family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001172
- InterPro:   IPR001543
- InterPro:   IPR013385 [H]

Pfam domain/function: PF01052 SpoA [H]

EC number: NA

Molecular weight: Translated: 33424; Mature: 33424

Theoretical pI: Translated: 4.58; Mature: 4.58

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.3 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
3.3 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
5.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIGSGRQTAGVSVALTEIDGEGVYLPLHYGGQECGLWLSQSCWQHWLNTTLATDNPQLLA
CCCCCCCCCCEEEEEEEECCCEEEEEEECCCHHHHHHHHHHHHHHHHCCEECCCCCHHHH
AELVIAMANWAVTPLLALFTDLVVLAESPQKRSLPKQWAVTVAFELEGQPIIGVLQDWPQ
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCCEEEEEEEEECCCCEEEHHHHCCH
AALADTLSHWPCEAVTAPDLLWQSGLVAGWCHLSLRQLQQLRPGEGLRLSMAAELDKEAC
HHHHHHHHCCCCCCCCCHHHHHHCCCHHHHHHHHHHHHHHCCCCCCEEEEHHHHCCCCCE
WLWHHASPQIYIKLEGGNRMTIQQINEASDPLACGSRAESPPLAAVQLEDLPQTLVMEIG
EEEECCCCEEEEEECCCCEEEHEECCCCCCCCCCCCCCCCCCEEEEEHHHCHHHHHHHHH
RLTLPLGEIKQLAVGQTLACQTHCYGEVNICLNGQSVGRGSLLRCDEKLVVRIAQWGLQN
HHCCCHHHHHHHHCCCEEEEEEECCEEEEEEECCCCCCCCCEEECCHHHHHHHHHHCCCC
GENIME
CCHHCC
>Mature Secondary Structure
MIGSGRQTAGVSVALTEIDGEGVYLPLHYGGQECGLWLSQSCWQHWLNTTLATDNPQLLA
CCCCCCCCCCEEEEEEEECCCEEEEEEECCCHHHHHHHHHHHHHHHHCCEECCCCCHHHH
AELVIAMANWAVTPLLALFTDLVVLAESPQKRSLPKQWAVTVAFELEGQPIIGVLQDWPQ
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCCEEEEEEEEECCCCEEEHHHHCCH
AALADTLSHWPCEAVTAPDLLWQSGLVAGWCHLSLRQLQQLRPGEGLRLSMAAELDKEAC
HHHHHHHHCCCCCCCCCHHHHHHCCCHHHHHHHHHHHHHHCCCCCCEEEEHHHHCCCCCE
WLWHHASPQIYIKLEGGNRMTIQQINEASDPLACGSRAESPPLAAVQLEDLPQTLVMEIG
EEEECCCCEEEEEECCCCEEEHEECCCCCCCCCCCCCCCCCCEEEEEHHHCHHHHHHHHH
RLTLPLGEIKQLAVGQTLACQTHCYGEVNICLNGQSVGRGSLLRCDEKLVVRIAQWGLQN
HHCCCHHHHHHHHCCCEEEEEEECCEEEEEEECCCCCCCCCEEECCHHHHHHHHHHCCCC
GENIME
CCHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11677609; 9140973; 9023191 [H]