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The map label for this gene is cisA [H]

Identifier: 218906641

GI number: 218906641

Start: 5264889

End: 5265707

Strand: Reverse

Name: cisA [H]

Synonym: BCAH820_5555

Alternate gene names: 218906641

Gene position: 5265707-5264889 (Counterclockwise)

Preceding gene: 218906642

Following gene: 218906640

Centisome position: 99.3

GC content: 33.94

Gene sequence:

>819_bases
ATGAAAGTAGTTGGATATGTACGAGTAAGTTCGGAATCACAAATTGAAAACACATCAATTGTTGAGCAAGAAGAACGAAT
ACAAGCATATTGCAAGGCTCAGGGATGGGAACTAATAAAGATATTTAGAGATGAAGGTTTAAGTGGTAAACAAACTGAGA
AGCGTGTAGGTTACAATGAAATGATTGAATATGTAAAAAGAACCACTGAAAATATAAAAGCAATTTTGGTACTGAAGTCA
GATAGAATTCATCGTATGTTAAAGAACTTGCTTGTCATGATACAAGATGAGCTGAAACCTTTGGAGATATCCTTTATTAG
TGTTACAGAGATGTTTGATACAAGTTCACCACAAGGTATGATGTTTTTACAAATGATTGGTAGCTTTGCCGAATTTGAGA
GAGAATTGATTTACCAACGTACAAAGGGTGGACGTATTAGCACAGCTAAAAACAATAAGTTTGCGGGTGGGGAATTACCT
TATGGATATGAAATTGTAGATGAGGGAGTCATAAAACATCAAACACAAGCATCGATTATAAAACGTATTTATCAAGATTA
CTTAGAAGGGCATTCGATGTATAAGATTGCAAAGAAACTAAATAATGAGGGAATAAGTCCTAAAAGAAGTACTAAATGGA
CATCACAAGGTATTAAGAACGTACTTTTAAATCAAGTGTATAAGGGAATTAAAATATATGACGGTAAAATCGAAAAAAAC
GGCATTGTACAAAAGGGAGTATTCCCTAGAATTGTTAGTTCTCAGCTTTGGAACTCGGTGAATGAGGTTATAAAAAGGGG
GGATATACACAGGAAATAA

Upstream 100 bases:

>100_bases
TTCGATGGTTTAACTATTTATTTTGTATAAAGTATTGTAATTCTTTATATTAAATCGTACACTAAATTACAAATAAATGG
AATTTTTTAGGAGGTTCTAA

Downstream 100 bases:

>100_bases
GGCATGAAAACATTAAGGGGGTACGCTTATATGAAGCTAAAGTGTCTAAGTGGTCATGACTTTATAGATAGTTTTGATAA
ATTCATTGAAGCACCTAAAT

Product: integrase

Products: NA

Alternate protein names: Stage IV sporulation protein CA [H]

Number of amino acids: Translated: 272; Mature: 272

Protein sequence:

>272_residues
MKVVGYVRVSSESQIENTSIVEQEERIQAYCKAQGWELIKIFRDEGLSGKQTEKRVGYNEMIEYVKRTTENIKAILVLKS
DRIHRMLKNLLVMIQDELKPLEISFISVTEMFDTSSPQGMMFLQMIGSFAEFERELIYQRTKGGRISTAKNNKFAGGELP
YGYEIVDEGVIKHQTQASIIKRIYQDYLEGHSMYKIAKKLNNEGISPKRSTKWTSQGIKNVLLNQVYKGIKIYDGKIEKN
GIVQKGVFPRIVSSQLWNSVNEVIKRGDIHRK

Sequences:

>Translated_272_residues
MKVVGYVRVSSESQIENTSIVEQEERIQAYCKAQGWELIKIFRDEGLSGKQTEKRVGYNEMIEYVKRTTENIKAILVLKS
DRIHRMLKNLLVMIQDELKPLEISFISVTEMFDTSSPQGMMFLQMIGSFAEFERELIYQRTKGGRISTAKNNKFAGGELP
YGYEIVDEGVIKHQTQASIIKRIYQDYLEGHSMYKIAKKLNNEGISPKRSTKWTSQGIKNVLLNQVYKGIKIYDGKIEKN
GIVQKGVFPRIVSSQLWNSVNEVIKRGDIHRK
>Mature_272_residues
MKVVGYVRVSSESQIENTSIVEQEERIQAYCKAQGWELIKIFRDEGLSGKQTEKRVGYNEMIEYVKRTTENIKAILVLKS
DRIHRMLKNLLVMIQDELKPLEISFISVTEMFDTSSPQGMMFLQMIGSFAEFERELIYQRTKGGRISTAKNNKFAGGELP
YGYEIVDEGVIKHQTQASIIKRIYQDYLEGHSMYKIAKKLNNEGISPKRSTKWTSQGIKNVLLNQVYKGIKIYDGKIEKN
GIVQKGVFPRIVSSQLWNSVNEVIKRGDIHRK

Specific function: Putative site-specific recombinase having a very important role in sporulation. It probably plays a role in the recombination of spoIIIC and spoIVCB to form sigma K factor [H]

COG id: COG1961

COG function: function code L; Site-specific recombinases, DNA invertase Pin homologs

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 recombinase domain [H]

Homologues:

Organism=Escherichia coli, GI1787404, Length=158, Percent_Identity=37.9746835443038, Blast_Score=84, Evalue=1e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011109
- InterPro:   IPR006118
- InterPro:   IPR006119 [H]

Pfam domain/function: PF07508 Recombinase; PF00239 Resolvase [H]

EC number: NA

Molecular weight: Translated: 31338; Mature: 31338

Theoretical pI: Translated: 9.99; Mature: 9.99

Prosite motif: PS00397 RECOMBINASES_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKVVGYVRVSSESQIENTSIVEQEERIQAYCKAQGWELIKIFRDEGLSGKQTEKRVGYNE
CCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCHHHHCCHHH
MIEYVKRTTENIKAILVLKSDRIHRMLKNLLVMIQDELKPLEISFISVTEMFDTSSPQGM
HHHHHHHHHHCCEEEEEECCHHHHHHHHHHHHHHHHCCCCEEEEEEEHHHHHCCCCCCHH
MFLQMIGSFAEFERELIYQRTKGGRISTAKNNKFAGGELPYGYEIVDEGVIKHQTQASII
HHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
KRIYQDYLEGHSMYKIAKKLNNEGISPKRSTKWTSQGIKNVLLNQVYKGIKIYDGKIEKN
HHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEECCEECCC
GIVQKGVFPRIVSSQLWNSVNEVIKRGDIHRK
CCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure
MKVVGYVRVSSESQIENTSIVEQEERIQAYCKAQGWELIKIFRDEGLSGKQTEKRVGYNE
CCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCHHHHCCHHH
MIEYVKRTTENIKAILVLKSDRIHRMLKNLLVMIQDELKPLEISFISVTEMFDTSSPQGM
HHHHHHHHHHCCEEEEEECCHHHHHHHHHHHHHHHHCCCCEEEEEEEHHHHHCCCCCCHH
MFLQMIGSFAEFERELIYQRTKGGRISTAKNNKFAGGELPYGYEIVDEGVIKHQTQASII
HHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
KRIYQDYLEGHSMYKIAKKLNNEGISPKRSTKWTSQGIKNVLLNQVYKGIKIYDGKIEKN
HHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEECCEECCC
GIVQKGVFPRIVSSQLWNSVNEVIKRGDIHRK
CCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2105293; 7704261; 8969508; 9384377 [H]