Definition | Bacillus cereus AH820, complete genome. |
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Accession | NC_011773 |
Length | 5,302,683 |
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The map label for this gene is 218902920
Identifier: 218902920
GI number: 218902920
Start: 1700795
End: 1701361
Strand: Direct
Name: 218902920
Synonym: BCAH820_1803
Alternate gene names: NA
Gene position: 1700795-1701361 (Clockwise)
Preceding gene: 218902917
Following gene: 218902921
Centisome position: 32.07
GC content: 32.45
Gene sequence:
>567_bases ATGAAATCAAATGAGAAAAATTATATAAAAAGATTAAAGCGGCAAAAAGAAGATGCGCTAGAATTTGTTGTTGATACATA CTTACCACTCATAAAAGGAATCACGCACAAAGTTCTTCTTCCTGTTCAAAATGATGGGTTAATAGAGGAATGTGTAAACG ATATATTTCTTTCCATATGGAATAACGCAAATAAATTTCATGGAGAACCAAATGATTTTAAAAAGTGGATTGCGGCAATT GCGAAGTTTAAAGCGATTGATTATTACCGGAAAGCGACTAAAAAAGTTGAAATTATTTCGGATGAGTTTCATATTAGTAC AGAAAAGTCGGCAGAAGACGAATTAATTATTATGGAAGATAGAGAAGAATTATTAATGCTTATTAATCAATTAGAACCGC TAGATCAAAAAGTGTTCATTATGAAATATTTACTCGGTATGAAGACAGAAGAAATAGGTGACAAGTTAGGATTAACCCGG GCAGCTATCGATAATCGTGTGTACCGGGGAAAAAAGAAGCTACAACAAAATGCTACGAATATTAGTTTTGGAGGTAGTGT AATATGA
Upstream 100 bases:
>100_bases CCATTACATACAAAAAATAATAAAAAGATGAGAGGAAATATTTTTTTAGACGTTATATAGGGTGTAAAAGCTTTTACAAA AAAATAAGGGGAATCGCTAC
Downstream 100 bases:
>100_bases AAGACATTTATGAACTATTAAATGATATTGATATAGATGAGAAAGAACTTGAGGAAATTGAGGCTTCTGAAATTGAAAAA GAAAAAGTGAAGCGTAATGT
Product: RNA polymerase factor sigma-70
Products: NA
Alternate protein names: RNA Polymerase Sigma-24 Subunit ECF Subfamily; RNA Polymerase Sigma Factor; RNA Polymerase Sigma-70 Factor Family; RNA Polymerase Sigma-70 Factor; ECF Subfamily RNA Polymerase Sigma-24 Factor; RNA Polymerase Sigma-70 Factor ECF Subfamily; RNA Polymerase
Number of amino acids: Translated: 188; Mature: 188
Protein sequence:
>188_residues MKSNEKNYIKRLKRQKEDALEFVVDTYLPLIKGITHKVLLPVQNDGLIEECVNDIFLSIWNNANKFHGEPNDFKKWIAAI AKFKAIDYYRKATKKVEIISDEFHISTEKSAEDELIIMEDREELLMLINQLEPLDQKVFIMKYLLGMKTEEIGDKLGLTR AAIDNRVYRGKKKLQQNATNISFGGSVI
Sequences:
>Translated_188_residues MKSNEKNYIKRLKRQKEDALEFVVDTYLPLIKGITHKVLLPVQNDGLIEECVNDIFLSIWNNANKFHGEPNDFKKWIAAI AKFKAIDYYRKATKKVEIISDEFHISTEKSAEDELIIMEDREELLMLINQLEPLDQKVFIMKYLLGMKTEEIGDKLGLTR AAIDNRVYRGKKKLQQNATNISFGGSVI >Mature_188_residues MKSNEKNYIKRLKRQKEDALEFVVDTYLPLIKGITHKVLLPVQNDGLIEECVNDIFLSIWNNANKFHGEPNDFKKWIAAI AKFKAIDYYRKATKKVEIISDEFHISTEKSAEDELIIMEDREELLMLINQLEPLDQKVFIMKYLLGMKTEEIGDKLGLTR AAIDNRVYRGKKKLQQNATNISFGGSVI
Specific function: Unknown
COG id: COG1595
COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 21780; Mature: 21780
Theoretical pI: Translated: 8.40; Mature: 8.40
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 2.7 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKSNEKNYIKRLKRQKEDALEFVVDTYLPLIKGITHKVLLPVQNDGLIEECVNDIFLSIW CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHEEEECCCCCHHHHHHHHHHHHHH NNANKFHGEPNDFKKWIAAIAKFKAIDYYRKATKKVEIISDEFHISTEKSAEDELIIMED CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCEECCCCCCCCCEEEECC REELLMLINQLEPLDQKVFIMKYLLGMKTEEIGDKLGLTRAAIDNRVYRGKKKLQQNATN HHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC ISFGGSVI CCCCCCCC >Mature Secondary Structure MKSNEKNYIKRLKRQKEDALEFVVDTYLPLIKGITHKVLLPVQNDGLIEECVNDIFLSIW CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHEEEECCCCCHHHHHHHHHHHHHH NNANKFHGEPNDFKKWIAAIAKFKAIDYYRKATKKVEIISDEFHISTEKSAEDELIIMED CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCEECCCCCCCCCEEEECC REELLMLINQLEPLDQKVFIMKYLLGMKTEEIGDKLGLTRAAIDNRVYRGKKKLQQNATN HHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC ISFGGSVI CCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA