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The map label for this gene is 218884458

Identifier: 218884458

GI number: 218884458

Start: 1078001

End: 1078778

Strand: Direct

Name: 218884458

Synonym: DKAM_1147

Alternate gene names: NA

Gene position: 1078001-1078778 (Clockwise)

Preceding gene: 218884454

Following gene: 218884492

Centisome position: 78.96

GC content: 48.46

Gene sequence:

>1059_bases
ATGGACCTGGTTGAGAAGGGGTTATCCTTCATAGATTACATAACAGCGAGAGCCGGCTACAGGAATGAATGGATAGTACT
AAGAGATGCTGAGACAAGCCCAGACCACGGGGTATTACCATATGAGAGAAAGGTAAACGATCACATAAACTACGGCGTGA
TAAACCTTGATAAACCACCGGGGCCAACGAGTCACGAGGTCGTGGCATGGGTCAAGAAAATGTTCAATCTGGAGAAAGCC
GGTCACGGGGGCACCCTGGAGCCCCTTTAGGGGCGGGGAAACCCCAAGGTGACCGGTGTTCTACCAATCGGGCTAGCGAA
TAGTACGAAGGTCATTGGGAACGTGATACATAGTGTTAAGGAATACGTAATGGTTATACAGTTACATGGGGATGCCAGGG
AGTCCAGTGTTAAAATGGTTGTAGAGTACTTTAAGGGCGATATATACCAGAAGCCGCCGCTGAGATCCAGTGTTAAGAGA
AGTATTAGGGTCAGGAGGATATATGAAATCGAGTTACTGGAGATCAGGGATAGATTCATACTTGTGAGGGTTTTAAGCGA
TCCAGGTACATACATGAGGAAACTTGCACACGATATTGGATTAATGCTTGGCACCGGGGCACACATGAGGGAGCTACGTA
GAACCCGTACAGGTCCTTATAGAGAGGATGAAACACTGGTTAGGCTGCAGGATATCAGCGAGGCACTTGCATTATGGAGG
AGTAGCGGGGATGAGAGATACATCAGGAGGATAATACTCCCGGTTGAGACATCGATAGCTCACCTACCGAAGATAATGAT
ACTTGATACAGCTGTAGACGCAATAGCTCATGGAGCCAATCTAGCTGTACCAGGCATCGCGAGGTTAACAAGTAATGTTG
AGAGAAATAAAACTGTAGCTATCCTAACGCTTAAAGGCGAGCTGGTGGCGCTGGGTACGGCGCTATATAGTGCAAAGGAG
ATAGCTGGGATGAAGAAGGGTGTGGTGGCGAGGACCCGGAGGGTGGTAATGCCTACAGGGATCTATCCCCCCGCATGGAG
GAAGGGGCAGCCGGGATGA

Upstream 100 bases:

>100_bases
GCATGTAAAGCCGAAGCTGACGCCTATTTAAGCTGGGTCTCGGCGAAATAATTAATATTTTCTTTAAATATTTTCTCTCC
ACCAGGGAAGGTGTAGTATA

Downstream 100 bases:

>100_bases
CGCACTACTATAAGCCTGGCCAGCCAGGCGAGAGGAAGCTCTTTTCCTTCACTATTCACGGCTATACATTCGAGTTCATA
TCTTACACGAGTCTCTTCTC

Product: H/ACA RNA-protein complex component Cbf5p

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 259; Mature: 259

Protein sequence:

>345_residues
MDLVEKGLSFIDYITARAGYRNEWIVLRDAETSPDHGVLPYERKVNDHINYGVINLDKPPGPTSHEVVAWVKKMFNLEKA
GHGGTLDPKVTGVLPIGLANSTKVIGNVIHSVKEYVMVIQLHGDARESSVKMVVEYFKGDIYQKPPLRSSVKRSIRVRRI
YEIELLEIRDRFILVRVLSDPGTYMRKLAHDIGLMLGTGAHMRELRRTRTGPYREDETLVRLQDISEALALWRSSGDERY
IRRIILPVETSIAHLPKIMILDTAVDAIAHGANLAVPGIARLTSNVERNKTVAILTLKGELVALGTALYSAKEIAGMKKG
VVARTRRVVMPTGIYPPAWRKGQPG

Sequences:

>Translated_259_residues
SSRLPLPPCGGIDPCRHYHPPGPRHHTLLHPSYLLCTI*RRTQRHQLAFKR*DSYSFISLNITC*PRDAWYS*IGSMSYC
VYSCIKYHYLR*VSYRCLNREYYPPDVSLIPATPP*CKCLADILQPNQCFILSIRTCTGST*LPHVCPGAKH*SNIVCKF
PHVCTWIA*NPHKYESIPDLQ*LDFIYPPDPNTSLNTGSQRRLLVYIALKVLYNHFNTGLPGIPM*LYNHYVFLNTMYHV
PNDLRTIR*PDW*NTGHLG
>Mature_259_residues
SSRLPLPPCGGIDPCRHYHPPGPRHHTLLHPSYLLCTI*RRTQRHQLAFKR*DSYSFISLNITC*PRDAWYS*IGSMSYC
VYSCIKYHYLR*VSYRCLNREYYPPDVSLIPATPP*CKCLADILQPNQCFILSIRTCTGST*LPHVCPGAKH*SNIVCKF
PHVCTWIA*NPHKYESIPDLQ*LDFIYPPDPNTSLNTGSQRRLLVYIALKVLYNHFNTGLPGIPM*LYNHYVFLNTMYHV
PNDLRTIR*PDW*NTGHLG

Specific function: Unknown

COG id: COG0130

COG function: function code J; Pseudouridine synthase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 28064; Mature: 28064

Theoretical pI: Translated: 8.82; Mature: 8.82

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

5.4 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
6.6 %Cys+Met (Translated Protein)
5.4 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
6.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
SSRLPLPPCGGIDPCRHYHPPGPRHHTLLHPSYLLCTIRRTQRHQLAFKRDSYSFISLNI
CCCCCCCCCCCCCHHHCCCCCCCCCCEEECCCEEEEEEHHHHHHHEEEECCCCEEEEEEE
TCPRDAWYSIGSMSYCVYSCIKYHYLRVSYRCLNREYYPPDVSLIPATPPCKCLADILQP
ECCCHHHHHHCCHHHHHHHHHHHHHHHHEEHHHCCCCCCCCCEEECCCCCHHHHHHHHCC
NQCFILSIRTCTGSTLPHVCPGAKHSNIVCKFPHVCTWIANPHKYESIPDLQLDFIYPPD
CCEEEEEEEECCCCCCCCCCCCCCCCCEEEECCCEEEECCCCCCCCCCCCCEEEEEECCC
PNTSLNTGSQRRLLVYIALKVLYNHFNTGLPGIPMLYNHYVFLNTMYHVPNDLRTIRPDW
CCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHCCEEEEEEEECCCCCCEEECCCC
NTGHLG
CCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA