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The map label for this gene is 218884399

Identifier: 218884399

GI number: 218884399

Start: 1027419

End: 1028054

Strand: Direct

Name: 218884399

Synonym: DKAM_1088

Alternate gene names: NA

Gene position: 1027419-1028054 (Clockwise)

Preceding gene: 218884398

Following gene: 218884407

Centisome position: 75.26

GC content: 46.38

Gene sequence:

>636_bases
ATGCAGGACAATGAAAAAGGAAGATTAATTCCTGGAGTAACTAGGCTCTACGAGAAACTCCCCTTGGAAAGGATTGGAGT
CCTTCTCGGTGATAACGGGAGAGTTAAGAAGGAGATAGAGGTTAAGACACGCACAATTCTAACCGTTGACTCTGAGACCG
GTAGCGTCATAATTGAGCCGGCTTTTCCAGAGACCACTTCACTAGAATTGATGAAGGCCAGGGATATCGTTAGAGCTGTA
GCATACGGGTTCAGCCCTGAGAGGGCTTTTAAACTGTTCGACGAAGACCAGATATTATTAGTAATAGATGTTAGACAATA
TGTTGGAGACAAACCCAACCACGTTAAGAGGGTTCTTGGTAGGGTAATAGGTGAGGATGGGAAGGCTAGAAGAGTCCTAG
AAGAGACAACAGGCACCTATATATCCGTGTATGAGCCCTACGTCGCTATAATAGGGGATTACGAATCCGCTAACATAGCC
CGTACAGCTATAGAGATGCTGGTTGAGGGTAGAACTCATGCGACAGTATATAAATACGTGGAAAGGGAGATGTTCACAGT
GAGGAAACGCAGGATGCGGGAGCTGTGGGTGAAGGGGCCTGAATTAGATACCGGCGGAAAGGAGAGGGATAGTTGA

Upstream 100 bases:

>100_bases
AATTCTTAATCAGGGACATCGAGAATATAAACAGGTTTTTCAGGGAGGAAACAGGTATAAGTACATATAGTCTAGAGGAA
ATACTGGAGGCTGTTAAAGA

Downstream 100 bases:

>100_bases
GCCAGTAATATTCAATCATTCATCCTGAATGCATGCAAACAACCAGTCGCCCTAGGTTGCTTCGCAATCGCTTTCCTATA
TTATTAAAAGGTAGAGTGCA

Product: putative RNA-processing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 211; Mature: 211

Protein sequence:

>211_residues
MQDNEKGRLIPGVTRLYEKLPLERIGVLLGDNGRVKKEIEVKTRTILTVDSETGSVIIEPAFPETTSLELMKARDIVRAV
AYGFSPERAFKLFDEDQILLVIDVRQYVGDKPNHVKRVLGRVIGEDGKARRVLEETTGTYISVYEPYVAIIGDYESANIA
RTAIEMLVEGRTHATVYKYVEREMFTVRKRRMRELWVKGPELDTGGKERDS

Sequences:

>Translated_211_residues
MQDNEKGRLIPGVTRLYEKLPLERIGVLLGDNGRVKKEIEVKTRTILTVDSETGSVIIEPAFPETTSLELMKARDIVRAV
AYGFSPERAFKLFDEDQILLVIDVRQYVGDKPNHVKRVLGRVIGEDGKARRVLEETTGTYISVYEPYVAIIGDYESANIA
RTAIEMLVEGRTHATVYKYVEREMFTVRKRRMRELWVKGPELDTGGKERDS
>Mature_211_residues
MQDNEKGRLIPGVTRLYEKLPLERIGVLLGDNGRVKKEIEVKTRTILTVDSETGSVIIEPAFPETTSLELMKARDIVRAV
AYGFSPERAFKLFDEDQILLVIDVRQYVGDKPNHVKRVLGRVIGEDGKARRVLEETTGTYISVYEPYVAIIGDYESANIA
RTAIEMLVEGRTHATVYKYVEREMFTVRKRRMRELWVKGPELDTGGKERDS

Specific function: Unknown

COG id: COG1094

COG function: function code R; Predicted RNA-binding protein (contains KH domains)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 2 KH domains [H]

Homologues:

Organism=Homo sapiens, GI10047140, Length=112, Percent_Identity=35.7142857142857, Blast_Score=65, Evalue=3e-11,
Organism=Caenorhabditis elegans, GI17537417, Length=113, Percent_Identity=37.1681415929204, Blast_Score=72, Evalue=2e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004087
- InterPro:   IPR019964
- InterPro:   IPR004088
- InterPro:   IPR018111 [H]

Pfam domain/function: PF00013 KH_1 [H]

EC number: NA

Molecular weight: Translated: 24062; Mature: 24062

Theoretical pI: Translated: 7.65; Mature: 7.65

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQDNEKGRLIPGVTRLYEKLPLERIGVLLGDNGRVKKEIEVKTRTILTVDSETGSVIIEP
CCCCCCCCCCHHHHHHHHHCCHHHHCEEECCCCCEEEEEEEEEEEEEEEECCCCCEEEEC
AFPETTSLELMKARDIVRAVAYGFSPERAFKLFDEDQILLVIDVRQYVGDKPNHVKRVLG
CCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHCCCCCCEEEEEEEHHHCCCCCHHHHHHHH
RVIGEDGKARRVLEETTGTYISVYEPYVAIIGDYESANIARTAIEMLVEGRTHATVYKYV
HHHCCCCHHHHHHHHHCCCEEEEECCEEEEEECCCCCHHHHHHHHHHHCCCCHHHHHHHH
EREMFTVRKRRMRELWVKGPELDTGGKERDS
HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
>Mature Secondary Structure
MQDNEKGRLIPGVTRLYEKLPLERIGVLLGDNGRVKKEIEVKTRTILTVDSETGSVIIEP
CCCCCCCCCCHHHHHHHHHCCHHHHCEEECCCCCEEEEEEEEEEEEEEEECCCCCEEEEC
AFPETTSLELMKARDIVRAVAYGFSPERAFKLFDEDQILLVIDVRQYVGDKPNHVKRVLG
CCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHCCCCCCEEEEEEEHHHCCCCCHHHHHHHH
RVIGEDGKARRVLEETTGTYISVYEPYVAIIGDYESANIARTAIEMLVEGRTHATVYKYV
HHHCCCCHHHHHHHHHCCCEEEEECCEEEEEECCCCCHHHHHHHHHHHCCCCHHHHHHHH
EREMFTVRKRRMRELWVKGPELDTGGKERDS
HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]