| Definition | Desulfurococcus kamchatkensis 1221n chromosome, complete genome. |
|---|---|
| Accession | NC_011766 |
| Length | 1,365,223 |
Click here to switch to the map view.
The map label for this gene is 218884196
Identifier: 218884196
GI number: 218884196
Start: 848889
End: 850049
Strand: Reverse
Name: 218884196
Synonym: DKAM_0885
Alternate gene names: NA
Gene position: 850049-848889 (Counterclockwise)
Preceding gene: 218884197
Following gene: 218884195
Centisome position: 62.26
GC content: 41.77
Gene sequence:
>1161_bases GTGTCATGGATTATTTTCACGGCTTTATCAAAGTTTACCGGGTTACTCTACGGGTTCTCTTATTACCTGGTTCCATCCTC AATAGCCGTTGTCCTTGTAAGCGTATTCAGCACCTTGATGCCTGGAACCCGTGGTAGTATGGGTTTATACTACTATATAG CGTTTGCCTCGATACCTATCTCTTATATTGTTGTAGGGCTTCTAACAGGCTTTGGCATAAATACTCTCATATCAAGTCTT CCCCAGTATCTTGCCTCGATCTTCTATTATGTTTCCTCAGTAACCCTGATAGAATCATCAAGGAAAATTATTCTCACGCA CGCACCAGCAACCCCGAACAATATTCTATTATACTCCACCTCGGTAGTTCAAGGCTTAGCTTATCTGTTTCTCCTTGAGA ATGTTGATGCCTCGATATCAGTTGTGGCGAAGTCTTTGTACTGGGTTGCATGGGGGATCCTTGGCACGATTACATACATT AGCAACGGGTTTAAGGCATCCCTATGTTTGTCCCTTATACAGGTATCAATGTATAAGCTCTCACCTGTTCTTCCATTGAG GATGAATGTGTTTCTAGCATATCTCCCTCTATTGGTCTCAACCATCCTTACTGGATTACTACTATTCATGGATCGCGCTG GAGCAATAGCTAATAATAAGATGCGTGGAATCCGCAGGCATGAACCCGCTTATCCTTCACTTATTCTCCTAGTAGTAGCA TTGCTCCTCGTCTTCTCTTTTCTACAGGGCTACAGGCTCCTAGTGATTTCCTCGGGAAGTATGACTCCAAGCCTTGGTAT TGGTGATATAGTGGTTATTGAGCCCAAGAGTATCAAGAGTATCTCAGTTGGTGATATAGTAGCGTTCTCTAATGGGGTAA ATATTGTTGTACACAGGGTTGTAAATGTAACCAGTGATGGTGGCTGCCTGATTACACGGGGCGATGCAAACAATGTTGAC GACCCCTTATGGGCGTGTATTAATACTATACTGGGTAGAGTGGTTTTTAGAGTTCCCTATATAGGTTATCCATTCATCAT CGCTGTAGGTGCTATAGGCAGCGTTTACACTGTTCTTTTCCTGGCTTCATGTTTATTATGTTTAACCTTTATTATTTATA TTGTTAAAAATATGTTGAGGTATACTTATCTTGGCGAATAA
Upstream 100 bases:
>100_bases TACAGTGTCCCGGCGCAATCTCCATAAGTTGAATATGAGGTGGCTTTAATTGAATAGTCTTTTTTCCCGTAACACCTATC TAATTTCTTTGCTACTTTAT
Downstream 100 bases:
>100_bases GTTACTAGTGAAAACAATGAGAATCCTAACTATTACACTTATCCTGGCACTCGCCGTAAGCATCGTAGTTATGGCTGTAT CCTACAGGATCGAACCCTAC
Product: signal peptidase type I
Products: NA
Alternate protein names: Signal Peptidase Type I
Number of amino acids: Translated: 386; Mature: 385
Protein sequence:
>386_residues MSWIIFTALSKFTGLLYGFSYYLVPSSIAVVLVSVFSTLMPGTRGSMGLYYYIAFASIPISYIVVGLLTGFGINTLISSL PQYLASIFYYVSSVTLIESSRKIILTHAPATPNNILLYSTSVVQGLAYLFLLENVDASISVVAKSLYWVAWGILGTITYI SNGFKASLCLSLIQVSMYKLSPVLPLRMNVFLAYLPLLVSTILTGLLLFMDRAGAIANNKMRGIRRHEPAYPSLILLVVA LLLVFSFLQGYRLLVISSGSMTPSLGIGDIVVIEPKSIKSISVGDIVAFSNGVNIVVHRVVNVTSDGGCLITRGDANNVD DPLWACINTILGRVVFRVPYIGYPFIIAVGAIGSVYTVLFLASCLLCLTFIIYIVKNMLRYTYLGE
Sequences:
>Translated_386_residues MSWIIFTALSKFTGLLYGFSYYLVPSSIAVVLVSVFSTLMPGTRGSMGLYYYIAFASIPISYIVVGLLTGFGINTLISSL PQYLASIFYYVSSVTLIESSRKIILTHAPATPNNILLYSTSVVQGLAYLFLLENVDASISVVAKSLYWVAWGILGTITYI SNGFKASLCLSLIQVSMYKLSPVLPLRMNVFLAYLPLLVSTILTGLLLFMDRAGAIANNKMRGIRRHEPAYPSLILLVVA LLLVFSFLQGYRLLVISSGSMTPSLGIGDIVVIEPKSIKSISVGDIVAFSNGVNIVVHRVVNVTSDGGCLITRGDANNVD DPLWACINTILGRVVFRVPYIGYPFIIAVGAIGSVYTVLFLASCLLCLTFIIYIVKNMLRYTYLGE >Mature_385_residues SWIIFTALSKFTGLLYGFSYYLVPSSIAVVLVSVFSTLMPGTRGSMGLYYYIAFASIPISYIVVGLLTGFGINTLISSLP QYLASIFYYVSSVTLIESSRKIILTHAPATPNNILLYSTSVVQGLAYLFLLENVDASISVVAKSLYWVAWGILGTITYIS NGFKASLCLSLIQVSMYKLSPVLPLRMNVFLAYLPLLVSTILTGLLLFMDRAGAIANNKMRGIRRHEPAYPSLILLVVAL LLVFSFLQGYRLLVISSGSMTPSLGIGDIVVIEPKSIKSISVGDIVAFSNGVNIVVHRVVNVTSDGGCLITRGDANNVDD PLWACINTILGRVVFRVPYIGYPFIIAVGAIGSVYTVLFLASCLLCLTFIIYIVKNMLRYTYLGE
Specific function: Unknown
COG id: COG0681
COG function: function code U; Signal peptidase I
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: 3.4.21.89
Molecular weight: Translated: 42060; Mature: 41928
Theoretical pI: Translated: 9.33; Mature: 9.33
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 3.6 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 3.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSWIIFTALSKFTGLLYGFSYYLVPSSIAVVLVSVFSTLMPGTRGSMGLYYYIAFASIPI CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHH SYIVVGLLTGFGINTLISSLPQYLASIFYYVSSVTLIESSRKIILTHAPATPNNILLYST HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHEEECCCEEEEEECCCCCCCEEEEEH SVVQGLAYLFLLENVDASISVVAKSLYWVAWGILGTITYISNGFKASLCLSLIQVSMYKL HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHC SPVLPLRMNVFLAYLPLLVSTILTGLLLFMDRAGAIANNKMRGIRRHEPAYPSLILLVVA CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHCHHHHCCCCCCCCCHHHHHHHHH LLLVFSFLQGYRLLVISSGSMTPSLGIGDIVVIEPKSIKSISVGDIVAFSNGVNIVVHRV HHHHHHHHCCCEEEEEECCCCCCCCCCCCEEEECCCCCCCCCCCCEEEECCCCCEEEEHH VNVTSDGGCLITRGDANNVDDPLWACINTILGRVVFRVPYIGYPFIIAVGAIGSVYTVLF HHCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHH LASCLLCLTFIIYIVKNMLRYTYLGE HHHHHHHHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure SWIIFTALSKFTGLLYGFSYYLVPSSIAVVLVSVFSTLMPGTRGSMGLYYYIAFASIPI CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHH SYIVVGLLTGFGINTLISSLPQYLASIFYYVSSVTLIESSRKIILTHAPATPNNILLYST HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHEEECCCEEEEEECCCCCCCEEEEEH SVVQGLAYLFLLENVDASISVVAKSLYWVAWGILGTITYISNGFKASLCLSLIQVSMYKL HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHC SPVLPLRMNVFLAYLPLLVSTILTGLLLFMDRAGAIANNKMRGIRRHEPAYPSLILLVVA CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHCHHHHCCCCCCCCCHHHHHHHHH LLLVFSFLQGYRLLVISSGSMTPSLGIGDIVVIEPKSIKSISVGDIVAFSNGVNIVVHRV HHHHHHHHCCCEEEEEECCCCCCCCCCCCEEEECCCCCCCCCCCCEEEECCCCCEEEEHH VNVTSDGGCLITRGDANNVDDPLWACINTILGRVVFRVPYIGYPFIIAVGAIGSVYTVLF HHCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHH LASCLLCLTFIIYIVKNMLRYTYLGE HHHHHHHHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA