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The map label for this gene is ytcJ [H]

Identifier: 218884041

GI number: 218884041

Start: 701114

End: 702697

Strand: Direct

Name: ytcJ [H]

Synonym: DKAM_0730

Alternate gene names: 218884041

Gene position: 701114-702697 (Clockwise)

Preceding gene: 218884040

Following gene: 218884052

Centisome position: 51.36

GC content: 46.97

Gene sequence:

>1584_bases
GTGCTGGTGACGGTTTTGCAGGGAGTCAAGTGCTTTATTAACGGAAGGATATATGCTGGGTTTAAACCGTTGAGGGTAAG
GGAGGCCGTTGTCACTGCATATGGCAGGATCCTATATGTTGGGGAAAACGAGGATGCTTTATCTATTTGCAGGATGCTTA
AGGGGGAAATAGTGGATCTCGGGGAAAGGATTATTCTACCCGGCTTCATAGACTCACACATGCACCTGGACAGCCTGGGC
CTGCAGCTAGCTACACTCGACCTCAGAGGGGTAAGGAGCATAGATGAGTTGAAGAAGAGGATTAGAGAGTACAATGAGGA
AAAGAACCCGGGAATCATCATAGGCCGGGGATGGGACCAGGAATTATTCGATGAGAAGAGATGGCCTACACGCTGGGACA
TAGACGAGGTAATCGGTGATAAACCAGTTATATTAATCAGGGTATGCGGGCATGCAGCAGTATTAAACACTAAGGCAATG
GGGATAACTGGTTTACTTACCAAGCAGACATCTAATATAGTAAGGGATGAATCAGGTGTTGCAACCGGCATAGTAGTTGA
GGACGCGGTAGGCGAGGCGCTAAGTATTCTTAATGGATCCATGAGCATGGATGCAAGAGTCGGGCTCATGGAGTCCGCGT
TGAAATACGCGTCATCACTGGGTGTTACAACAATAGGATTCATGAGTTGCGGTAGATATTCGCTTGAAGCCCTCTTCACA
TTATTTCAGAGTAATGGATGGAGGTATCCAAGGATTAGGGTATACATGGAGCCAGGCTTGTTCAATGATGTAAGCAGGCT
GGGTGTTAAAGGGGGCTTCGGCAACGAGTACCTGAGGATAAAGGGGGTTAAATTATTCGCGGATGGGAGCCTAGGGGCTA
GGACAGCCTGGCTATCAAAGCCTTACAGCGATAAGCCATCAGTTAGTGGGAGGCAGCTGATTAGTAAGGAGGAGCTTCGC
GAGGTCCTTGAGAAAGCCTCTAAGCAAGGCTTCCAAGTAGCGGTACACGGTATCGGTGATGCGGCAATAGATCTAATACT
CAGTGTATACAGAGAACTCGGAGTAAGCGGAAGGATTAGACACAGGATTGAACATGCCTCTGTCATAAGGCCGGATCAAA
TCGAGGAGGCATCTAGGCTGGGAATAGTCATCTCTGTCCAACCACACTTCGTGATCTCGGATTGGTGGGCTAAGGAGAGA
CTAGGTAGTGAGAGGATTAAGTGGTTATATCCATTTAAAACCATGACCAGTAAAGGAGTAATGCTAGGTTTTTCCACCGA
TTCACCGGTTGAGCCATTGAACCCGTGGGAGACGATATATGCGGCTGTTACAAGGGGGAGGAATGAGAATATATTTTTCT
ACGAGGACACGAGGAATGAAGCATTAACTCTTGAGGACGCCCTCTACTATTATACGTATGGATCAGCATACGTGATAGGT
GAGGAAGAGGAACTAGGCTCATTGGAGGAAGGGAAATTAGCAGACTTTATAGTAGTTGACAGAGATCCATTCGAAGTAGA
CATCGATGAGGTTAGAGGCATTAAGGTATTGGAGACATATATAGGAGGGGAGAGAATATACTAG

Upstream 100 bases:

>100_bases
GCAAGTATTGTGTTATAGTTGATGCCGAGATGGTTTAGTGTTTCTAGAACCATGGCGGGTCAGCTATAAGTGTATAAGCT
TATTGTGTTATAATTGATGA

Downstream 100 bases:

>100_bases
TAGTCACCCCATCCCTTCACCATCTTTACAACATCATCTCTTACCCTTCCTTTTTCCACATCATCAATGGCCTTCTCAAG
TATTCTCAACCCATTTTCAA

Product: putative metal-dependent hydrolase with the TIM-barrel fold

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 527; Mature: 527

Protein sequence:

>527_residues
MLVTVLQGVKCFINGRIYAGFKPLRVREAVVTAYGRILYVGENEDALSICRMLKGEIVDLGERIILPGFIDSHMHLDSLG
LQLATLDLRGVRSIDELKKRIREYNEEKNPGIIIGRGWDQELFDEKRWPTRWDIDEVIGDKPVILIRVCGHAAVLNTKAM
GITGLLTKQTSNIVRDESGVATGIVVEDAVGEALSILNGSMSMDARVGLMESALKYASSLGVTTIGFMSCGRYSLEALFT
LFQSNGWRYPRIRVYMEPGLFNDVSRLGVKGGFGNEYLRIKGVKLFADGSLGARTAWLSKPYSDKPSVSGRQLISKEELR
EVLEKASKQGFQVAVHGIGDAAIDLILSVYRELGVSGRIRHRIEHASVIRPDQIEEASRLGIVISVQPHFVISDWWAKER
LGSERIKWLYPFKTMTSKGVMLGFSTDSPVEPLNPWETIYAAVTRGRNENIFFYEDTRNEALTLEDALYYYTYGSAYVIG
EEEELGSLEEGKLADFIVVDRDPFEVDIDEVRGIKVLETYIGGERIY

Sequences:

>Translated_527_residues
MLVTVLQGVKCFINGRIYAGFKPLRVREAVVTAYGRILYVGENEDALSICRMLKGEIVDLGERIILPGFIDSHMHLDSLG
LQLATLDLRGVRSIDELKKRIREYNEEKNPGIIIGRGWDQELFDEKRWPTRWDIDEVIGDKPVILIRVCGHAAVLNTKAM
GITGLLTKQTSNIVRDESGVATGIVVEDAVGEALSILNGSMSMDARVGLMESALKYASSLGVTTIGFMSCGRYSLEALFT
LFQSNGWRYPRIRVYMEPGLFNDVSRLGVKGGFGNEYLRIKGVKLFADGSLGARTAWLSKPYSDKPSVSGRQLISKEELR
EVLEKASKQGFQVAVHGIGDAAIDLILSVYRELGVSGRIRHRIEHASVIRPDQIEEASRLGIVISVQPHFVISDWWAKER
LGSERIKWLYPFKTMTSKGVMLGFSTDSPVEPLNPWETIYAAVTRGRNENIFFYEDTRNEALTLEDALYYYTYGSAYVIG
EEEELGSLEEGKLADFIVVDRDPFEVDIDEVRGIKVLETYIGGERIY
>Mature_527_residues
MLVTVLQGVKCFINGRIYAGFKPLRVREAVVTAYGRILYVGENEDALSICRMLKGEIVDLGERIILPGFIDSHMHLDSLG
LQLATLDLRGVRSIDELKKRIREYNEEKNPGIIIGRGWDQELFDEKRWPTRWDIDEVIGDKPVILIRVCGHAAVLNTKAM
GITGLLTKQTSNIVRDESGVATGIVVEDAVGEALSILNGSMSMDARVGLMESALKYASSLGVTTIGFMSCGRYSLEALFT
LFQSNGWRYPRIRVYMEPGLFNDVSRLGVKGGFGNEYLRIKGVKLFADGSLGARTAWLSKPYSDKPSVSGRQLISKEELR
EVLEKASKQGFQVAVHGIGDAAIDLILSVYRELGVSGRIRHRIEHASVIRPDQIEEASRLGIVISVQPHFVISDWWAKER
LGSERIKWLYPFKTMTSKGVMLGFSTDSPVEPLNPWETIYAAVTRGRNENIFFYEDTRNEALTLEDALYYYTYGSAYVIG
EEEELGSLEEGKLADFIVVDRDPFEVDIDEVRGIKVLETYIGGERIY

Specific function: Unknown

COG id: COG1574

COG function: function code R; Predicted metal-dependent hydrolase with the TIM-barrel fold

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013108
- InterPro:   IPR011059 [H]

Pfam domain/function: PF07969 Amidohydro_3 [H]

EC number: NA

Molecular weight: Translated: 59031; Mature: 59031

Theoretical pI: Translated: 5.34; Mature: 5.34

Prosite motif: PS01137 TATD_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLVTVLQGVKCFINGRIYAGFKPLRVREAVVTAYGRILYVGENEDALSICRMLKGEIVDL
CEEEEECCCEEEECCEEEECCCCHHHHHHHHHHCCEEEEEECCCCHHHHHHHHHHHHHCC
GERIILPGFIDSHMHLDSLGLQLATLDLRGVRSIDELKKRIREYNEEKNPGIIIGRGWDQ
CCEEEECCCCCCCCCHHHCCCEEEEEEHHCCCCHHHHHHHHHHCCCCCCCCEEEECCCCH
ELFDEKRWPTRWDIDEVIGDKPVILIRVCGHAAVLNTKAMGITGLLTKQTSNIVRDESGV
HHHHCCCCCCCCCHHHHHCCCCEEEEEECCCEEEEECCCCCEEEEEEHHHHHHHCCCCCC
ATGIVVEDAVGEALSILNGSMSMDARVGLMESALKYASSLGVTTIGFMSCGRYSLEALFT
EEEEEEEHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCEEHHHHCCHHHHHHHHH
LFQSNGWRYPRIRVYMEPGLFNDVSRLGVKGGFGNEYLRIKGVKLFADGSLGARTAWLSK
HHHCCCCCCCEEEEEECCCCCHHHHHHCCCCCCCCCEEEEEEEEEEECCCCCCEEHHCCC
PYSDKPSVSGRQLISKEELREVLEKASKQGFQVAVHGIGDAAIDLILSVYRELGVSGRIR
CCCCCCCCCHHHHHCHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHHCCCCHHH
HRIEHASVIRPDQIEEASRLGIVISVQPHFVISDWWAKERLGSERIKWLYPFKTMTSKGV
HHHHHHCCCCCHHHHHHHHCEEEEEECCCEEEECHHHHHHCCCCCEEEEECCHHHCCCCE
MLGFSTDSPVEPLNPWETIYAAVTRGRNENIFFYEDTRNEALTLEDALYYYTYGSAYVIG
EEEECCCCCCCCCCHHHHHHHHHHCCCCCCEEEEECCCCCEEEEEEEEEEEEECCEEEEE
EEEELGSLEEGKLADFIVVDRDPFEVDIDEVRGIKVLETYIGGERIY
CHHHCCCCCCCCCEEEEEECCCCCEEEHHHHCCEEEEHHHCCCCCCC
>Mature Secondary Structure
MLVTVLQGVKCFINGRIYAGFKPLRVREAVVTAYGRILYVGENEDALSICRMLKGEIVDL
CEEEEECCCEEEECCEEEECCCCHHHHHHHHHHCCEEEEEECCCCHHHHHHHHHHHHHCC
GERIILPGFIDSHMHLDSLGLQLATLDLRGVRSIDELKKRIREYNEEKNPGIIIGRGWDQ
CCEEEECCCCCCCCCHHHCCCEEEEEEHHCCCCHHHHHHHHHHCCCCCCCCEEEECCCCH
ELFDEKRWPTRWDIDEVIGDKPVILIRVCGHAAVLNTKAMGITGLLTKQTSNIVRDESGV
HHHHCCCCCCCCCHHHHHCCCCEEEEEECCCEEEEECCCCCEEEEEEHHHHHHHCCCCCC
ATGIVVEDAVGEALSILNGSMSMDARVGLMESALKYASSLGVTTIGFMSCGRYSLEALFT
EEEEEEEHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCEEHHHHCCHHHHHHHHH
LFQSNGWRYPRIRVYMEPGLFNDVSRLGVKGGFGNEYLRIKGVKLFADGSLGARTAWLSK
HHHCCCCCCCEEEEEECCCCCHHHHHHCCCCCCCCCEEEEEEEEEEECCCCCCEEHHCCC
PYSDKPSVSGRQLISKEELREVLEKASKQGFQVAVHGIGDAAIDLILSVYRELGVSGRIR
CCCCCCCCCHHHHHCHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHHCCCCHHH
HRIEHASVIRPDQIEEASRLGIVISVQPHFVISDWWAKERLGSERIKWLYPFKTMTSKGV
HHHHHHCCCCCHHHHHHHHCEEEEEECCCEEEECHHHHHHCCCCCEEEEECCHHHCCCCE
MLGFSTDSPVEPLNPWETIYAAVTRGRNENIFFYEDTRNEALTLEDALYYYTYGSAYVIG
EEEECCCCCCCCCCHHHHHHHHHHCCCCCCEEEEECCCCCEEEEEEEEEEEEECCEEEEE
EEEELGSLEEGKLADFIVVDRDPFEVDIDEVRGIKVLETYIGGERIY
CHHHCCCCCCCCCEEEEEECCCCCEEEHHHHCCEEEEHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9387221; 9384377 [H]