| Definition | Desulfurococcus kamchatkensis 1221n chromosome, complete genome. |
|---|---|
| Accession | NC_011766 |
| Length | 1,365,223 |
Click here to switch to the map view.
The map label for this gene is 218883909
Identifier: 218883909
GI number: 218883909
Start: 559860
End: 561323
Strand: Direct
Name: 218883909
Synonym: DKAM_0598
Alternate gene names: NA
Gene position: 559860-561323 (Clockwise)
Preceding gene: 218883908
Following gene: 218883910
Centisome position: 41.01
GC content: 44.81
Gene sequence:
>1464_bases ATGGTGCTAGCACTTGTCTTCATAGGTTTAATAGCCCTAGTTGAAAGAGGGCCAGTTGTCCCAGGGTTCCCAGTGGGTGC ATCCCCATTTAACCCGTTATCTTTTGGTACACTGGGGTTAGTTAAGGATCTCGAGCATTACTACACTGTTAGAATAGCTA GCTCCATGGAGGATCTCAATAGATTAACCGGTGGTAAATGTATTTATGTAGTGATATCGCCGGAGAAGCCTTTTGTAGCC AGTGAAGCCGAGTACATAGTGAAATCACTCAGCGAGAGATGCAGGGAAGCAATAGTCTTCATCGGAGACGAATCAACTTA TTCAAACGGGCTCTTGGAAGCGTTGAATACAAGTATCCGAGTTACCGGTAGCAGAATATACGTGAGCCAGTGTAGTGATA TGGCATGCGGGTACTCGCCGTATCCACGTGCCCGGCTAATCCTTGGAAACAGGTCATTCAACCTAGTTCTAGATAAGGCA TCAAATCTCATTGGTAGGGGAATTATACGGGGGTATATTACCGGGGGATGTGTTGTTACATTGCCTGGTGCAGGAGGCTT CGAATGCAGTAGTATCGCGGTTGGAGCTAACGAGACCGTAGAGGCAGGAATCCATGACCCTGTTGTAGCATTAGAGGATC ACGACTCACGTATACCGGTCTACGTGATAGGGGATGGCTCGATATTTCTTAACCAGGTGATTAACTCGGGGAATCAGAGC GAGTACAAGGTGTTCGTGTTAGAGTTATTCCAGTATTTATGTGGAGGGGAGAGCGGGTGTATTATGGTATTTGACAACAT GCACTATGAAACGATCAATGCATTCAACCTACTAGTGAATCCAGGCTTAATTACAGGGGCTGGAACTGGTTTAAGTGATA TACTCTACGTATTCTCCCTTATACTTGCAACAATTATACATCCATCATTCTGGATGCCCCTGGTATTCAAATTTCTCGAT GAATTATTCTCCACGCTTCTAGCCAACATGTTCCTAGCTATCCTCGTATTACTAGCAGTCACCATAGTTGTAGACAAGTA CTTAACAAGGGGCATTGTTTTCAGGGGGGATGAAGTGTTAAGGGAGCAGGTTGAAAGAGATATTACAGTGTTTGAATCAG TGAGGAGGAAGATAATTGAGAAGAAGGAGAAGCTGGGCAGGGATGACTTCCTAAACATCTATTGGCTAGCGAACCAGGTG TTAACCATGATACTAGGGGTTGAACTATCCAGTCCAGCCTTCATTGAGAGAACATCACAATACGTGGGAAGTGATCTAGC TAGCTCGTACTGGAGCTACATGAATAAGCTATATAGGAGAGCAGTAGGGGAGTCTTGGAGACCGCTTATAGTGAGGTGGC ATAGTGAAGCACTTAAAGCCTATAGTGAAACCGAAAAAATGCTTTCACTCATTACATCAAGGCTTCAGATAGGGGATTAT AGAAGGCTTCTAGCGGGGATCTAA
Upstream 100 bases:
>100_bases TATATATTGAGGCTGGCGGCATATGTATACGCAACAGAGAGGAGGGGGGAGAGTGGAGAAAAAGAGGAGACAGGGGAGAG GTAGTCTAGTAGCAACATCC
Downstream 100 bases:
>100_bases ATGGCTATTCATGCTACAACAAGGCTGAGGCTCTACATGTTATCTACTGCCCTGCTTCTAGCTGGAGCCATAATAGTTGA CCCAACTTTCCTGCCTCCAG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 487; Mature: 487
Protein sequence:
>487_residues MVLALVFIGLIALVERGPVVPGFPVGASPFNPLSFGTLGLVKDLEHYYTVRIASSMEDLNRLTGGKCIYVVISPEKPFVA SEAEYIVKSLSERCREAIVFIGDESTYSNGLLEALNTSIRVTGSRIYVSQCSDMACGYSPYPRARLILGNRSFNLVLDKA SNLIGRGIIRGYITGGCVVTLPGAGGFECSSIAVGANETVEAGIHDPVVALEDHDSRIPVYVIGDGSIFLNQVINSGNQS EYKVFVLELFQYLCGGESGCIMVFDNMHYETINAFNLLVNPGLITGAGTGLSDILYVFSLILATIIHPSFWMPLVFKFLD ELFSTLLANMFLAILVLLAVTIVVDKYLTRGIVFRGDEVLREQVERDITVFESVRRKIIEKKEKLGRDDFLNIYWLANQV LTMILGVELSSPAFIERTSQYVGSDLASSYWSYMNKLYRRAVGESWRPLIVRWHSEALKAYSETEKMLSLITSRLQIGDY RRLLAGI
Sequences:
>Translated_487_residues MVLALVFIGLIALVERGPVVPGFPVGASPFNPLSFGTLGLVKDLEHYYTVRIASSMEDLNRLTGGKCIYVVISPEKPFVA SEAEYIVKSLSERCREAIVFIGDESTYSNGLLEALNTSIRVTGSRIYVSQCSDMACGYSPYPRARLILGNRSFNLVLDKA SNLIGRGIIRGYITGGCVVTLPGAGGFECSSIAVGANETVEAGIHDPVVALEDHDSRIPVYVIGDGSIFLNQVINSGNQS EYKVFVLELFQYLCGGESGCIMVFDNMHYETINAFNLLVNPGLITGAGTGLSDILYVFSLILATIIHPSFWMPLVFKFLD ELFSTLLANMFLAILVLLAVTIVVDKYLTRGIVFRGDEVLREQVERDITVFESVRRKIIEKKEKLGRDDFLNIYWLANQV LTMILGVELSSPAFIERTSQYVGSDLASSYWSYMNKLYRRAVGESWRPLIVRWHSEALKAYSETEKMLSLITSRLQIGDY RRLLAGI >Mature_487_residues MVLALVFIGLIALVERGPVVPGFPVGASPFNPLSFGTLGLVKDLEHYYTVRIASSMEDLNRLTGGKCIYVVISPEKPFVA SEAEYIVKSLSERCREAIVFIGDESTYSNGLLEALNTSIRVTGSRIYVSQCSDMACGYSPYPRARLILGNRSFNLVLDKA SNLIGRGIIRGYITGGCVVTLPGAGGFECSSIAVGANETVEAGIHDPVVALEDHDSRIPVYVIGDGSIFLNQVINSGNQS EYKVFVLELFQYLCGGESGCIMVFDNMHYETINAFNLLVNPGLITGAGTGLSDILYVFSLILATIIHPSFWMPLVFKFLD ELFSTLLANMFLAILVLLAVTIVVDKYLTRGIVFRGDEVLREQVERDITVFESVRRKIIEKKEKLGRDDFLNIYWLANQV LTMILGVELSSPAFIERTSQYVGSDLASSYWSYMNKLYRRAVGESWRPLIVRWHSEALKAYSETEKMLSLITSRLQIGDY RRLLAGI
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 53971; Mature: 53971
Theoretical pI: Translated: 5.52; Mature: 5.52
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.6 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 3.7 %Cys+Met (Translated Protein) 1.6 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 3.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MVLALVFIGLIALVERGPVVPGFPVGASPFNPLSFGTLGLVKDLEHYYTVRIASSMEDLN CHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHEEHHHHHHHHHH RLTGGKCIYVVISPEKPFVASEAEYIVKSLSERCREAIVFIGDESTYSNGLLEALNTSIR HHCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHEEEECCCCCCCHHHHHHCCCCEE VTGSRIYVSQCSDMACGYSPYPRARLILGNRSFNLVLDKASNLIGRGIIRGYITGGCVVT EECCEEEEECCCCCCCCCCCCCCEEEEEECCCEEEEEEHHHHHHHHHHHHHEECCCEEEE LPGAGGFECSSIAVGANETVEAGIHDPVVALEDHDSRIPVYVIGDGSIFLNQVINSGNQS ECCCCCCCCCCEEECCCCCHHCCCCCCEEEECCCCCCCCEEEEECCHHHHHHHHCCCCCC EYKVFVLELFQYLCGGESGCIMVFDNMHYETINAFNLLVNPGLITGAGTGLSDILYVFSL HHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHEEECCCEEECCCCCHHHHHHHHHH ILATIIHPSFWMPLVFKFLDELFSTLLANMFLAILVLLAVTIVVDKYLTRGIVFRGDEVL HHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEECCHHHH REQVERDITVFESVRRKIIEKKEKLGRDDFLNIYWLANQVLTMILGVELSSPAFIERTSQ HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHH YVGSDLASSYWSYMNKLYRRAVGESWRPLIVRWHSEALKAYSETEKMLSLITSRLQIGDY HHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHH RRLLAGI HHHHHCC >Mature Secondary Structure MVLALVFIGLIALVERGPVVPGFPVGASPFNPLSFGTLGLVKDLEHYYTVRIASSMEDLN CHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHEEHHHHHHHHHH RLTGGKCIYVVISPEKPFVASEAEYIVKSLSERCREAIVFIGDESTYSNGLLEALNTSIR HHCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHEEEECCCCCCCHHHHHHCCCCEE VTGSRIYVSQCSDMACGYSPYPRARLILGNRSFNLVLDKASNLIGRGIIRGYITGGCVVT EECCEEEEECCCCCCCCCCCCCCEEEEEECCCEEEEEEHHHHHHHHHHHHHEECCCEEEE LPGAGGFECSSIAVGANETVEAGIHDPVVALEDHDSRIPVYVIGDGSIFLNQVINSGNQS ECCCCCCCCCCEEECCCCCHHCCCCCCEEEECCCCCCCCEEEEECCHHHHHHHHCCCCCC EYKVFVLELFQYLCGGESGCIMVFDNMHYETINAFNLLVNPGLITGAGTGLSDILYVFSL HHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHEEECCCEEECCCCCHHHHHHHHHH ILATIIHPSFWMPLVFKFLDELFSTLLANMFLAILVLLAVTIVVDKYLTRGIVFRGDEVL HHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEECCHHHH REQVERDITVFESVRRKIIEKKEKLGRDDFLNIYWLANQVLTMILGVELSSPAFIERTSQ HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHH YVGSDLASSYWSYMNKLYRRAVGESWRPLIVRWHSEALKAYSETEKMLSLITSRLQIGDY HHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHH RRLLAGI HHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA