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The map label for this gene is lrpA [H]

Identifier: 218883742

GI number: 218883742

Start: 400740

End: 401177

Strand: Direct

Name: lrpA [H]

Synonym: DKAM_0431

Alternate gene names: 218883742

Gene position: 400740-401177 (Clockwise)

Preceding gene: 218883741

Following gene: 218883743

Centisome position: 29.35

GC content: 38.81

Gene sequence:

>438_bases
TTGCTTGATGAGATTGACACGTTTATAATAAGGGAGTTAATGGAAAACGCTAGAAAACCCTTTAGAGAAATCGCAATGAA
GCTAAAGCTAAGTGATGTAGCAGTGATCAAAAGAGTTAGAAAACTGGAGGAAAGAGGTGTGATAAGGAAATATGCGTTAA
TAGTTAACCCGGCCGTCCTGGGATATAATAAGATCAGCTTCACCGGTATAAATGTCAAACCAGATAAATTATTCGAGGTG
GCATCGAAACTAAGGGAGAAGGAATATGTTAAATACATCGCGTTGACGTCGGGAGACCACGAGCTACTTGCAGTAATATG
GGCGAGAGATAGTGAGGAATTAAAGAAAATACATGATGAGATAAAGAATATAGAGGGCGTTATAAATATCTATCCAGCAA
TACTCACCGACATAATCAAGGCCGATGCATACGTTTAA

Upstream 100 bases:

>100_bases
GTTGCGAAGCTAGGTTGATCGAATACAGGGAGACCGGGGATAATGAGTTTAAAAGGCTAGGTATATTTAAGCTAGACTTG
TGTAGGCAGGGTGATTAGAC

Downstream 100 bases:

>100_bases
ATCCACCAAATCCACCAGTTACCTTACCTGCATGTTTCTCACTACATTCCATACCTAAAGCAACCAGTTGTAGAATCCTG
ACCAGAACCATACCTACTTT

Product: putative AsnC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 145; Mature: 145

Protein sequence:

>145_residues
MLDEIDTFIIRELMENARKPFREIAMKLKLSDVAVIKRVRKLEERGVIRKYALIVNPAVLGYNKISFTGINVKPDKLFEV
ASKLREKEYVKYIALTSGDHELLAVIWARDSEELKKIHDEIKNIEGVINIYPAILTDIIKADAYV

Sequences:

>Translated_145_residues
MLDEIDTFIIRELMENARKPFREIAMKLKLSDVAVIKRVRKLEERGVIRKYALIVNPAVLGYNKISFTGINVKPDKLFEV
ASKLREKEYVKYIALTSGDHELLAVIWARDSEELKKIHDEIKNIEGVINIYPAILTDIIKADAYV
>Mature_145_residues
MLDEIDTFIIRELMENARKPFREIAMKLKLSDVAVIKRVRKLEERGVIRKYALIVNPAVLGYNKISFTGINVKPDKLFEV
ASKLREKEYVKYIALTSGDHELLAVIWARDSEELKKIHDEIKNIEGVINIYPAILTDIIKADAYV

Specific function: Negatively regulates its own transcription [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH asnC-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011008
- InterPro:   IPR013196
- InterPro:   IPR000485
- InterPro:   IPR019885
- InterPro:   IPR019888
- InterPro:   IPR019887
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01037 AsnC_trans_reg; PF08279 HTH_11 [H]

EC number: NA

Molecular weight: Translated: 16715; Mature: 16715

Theoretical pI: Translated: 9.25; Mature: 9.25

Prosite motif: PS50956 HTH_ASNC_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLDEIDTFIIRELMENARKPFREIAMKLKLSDVAVIKRVRKLEERGVIRKYALIVNPAVL
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCHHHH
GYNKISFTGINVKPDKLFEVASKLREKEYVKYIALTSGDHELLAVIWARDSEELKKIHDE
CCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHEEECCCCEEEEEEECCCHHHHHHHHHH
IKNIEGVINIYPAILTDIIKADAYV
HHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MLDEIDTFIIRELMENARKPFREIAMKLKLSDVAVIKRVRKLEERGVIRKYALIVNPAVL
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCHHHH
GYNKISFTGINVKPDKLFEVASKLREKEYVKYIALTSGDHELLAVIWARDSEELKKIHDE
CCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHEEECCCCEEEEEEECCCHHHHHHHHHH
IKNIEGVINIYPAILTDIIKADAYV
HHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12622808 [H]