| Definition | Desulfurococcus kamchatkensis 1221n chromosome, complete genome. |
|---|---|
| Accession | NC_011766 |
| Length | 1,365,223 |
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The map label for this gene is 218883682
Identifier: 218883682
GI number: 218883682
Start: 343201
End: 344091
Strand: Reverse
Name: 218883682
Synonym: DKAM_0371
Alternate gene names: NA
Gene position: 344091-343201 (Counterclockwise)
Preceding gene: 218883683
Following gene: 218883681
Centisome position: 25.2
GC content: 43.21
Gene sequence:
>891_bases ATGACCCCAGGTGCCAGAAGGAGATCGAGTTCCCTGTTAGCATGCATTATTGTATCCATAGTTTTCCTAGTGTCCCTGGT GTTTTCCTCCAGGGTCATAGGGGTTGATAAGGTTATAGCATACTGGTTAACGGGGTTATCGCTTAGCTTAGTCGGCTTGC TAGCCTATTATAGGGGGTTAGAGTTCCTTGTCTCAGGCTCCATACATAATAGTTTTCTAGCGGCTACCCTCGGCTACATC TTTGCATTAATATTCGGGGTGAACATATATTATTCAGCGATACCGGTTGGGTTGATGTTAACATATCTCGCCGGATACTT AATTCACAGGGGAATAGATCCCAACAAAGTATCCTCTTTCATGGTTTCATTCTCATCATCGATGGGTGTTCTACTAGCAT ACTACGTGTTAACAATGTTCCCTGCACAATATAGTCTATCCAGTATAATGCTAGGGGACCCTGTTCTAATGAGCAGGCAA GACGTCCTGGTGACTACTGTTATTTCAATAATTGTAGTCACAGTGGTTATTTTAATATACAACAAGATAATTTTATTAAG CATAGATCCCGTGTCCGCTAGGATAGCTGGTGTGAGGATAGGCTACTATGATTTCATCACTTACACCCTAATCGGTTTAG CCACGATAGGGCTACTACGTATCAGCGGTTACATAATGGAGCATGTAATGATACTCCTCCCGGCAATAGTGGGGGCAAGA ATCTCTAGAAGCAGTAAGGAGCACTTACTATTAACACTACTAGTGTCAACAACGTCTACGATGCTGGGATATGTGGCTGC AGTAAACTATGGATTAAGCCCTGTAGGTGTAAGTGGTTTTATCCTTGTCATCGCTTTTCTATATGTGGCGCTCACAGGGT GGGGAAGATAG
Upstream 100 bases:
>100_bases TGGAGGGACCTTCTCATCTAGCATCTGATCCCCTCTCCATAATACTCTATGTGGTTATAGGTGTCATAATAGGTTTAGCA TTGTCTAGGTGGGTTTACAG
Downstream 100 bases:
>100_bases ATGGGCGGGAATTTAAAGAAGAGGTTTGGTGTGAGCGTGCCCTACCATGTGGCGGAGAAACTGGATAATCTAGCCGGATT ATTTCACTGTGATAGATCTA
Product: Mn2+/Zn2+ ABC transporter permease
Products: NA
Alternate protein names: ABC-Type Mn2+/Zn2+ Transport System Permease Component; ABC Transporter; ABC Transporter Permease Protein; ABC Transporter Protein
Number of amino acids: Translated: 296; Mature: 295
Protein sequence:
>296_residues MTPGARRRSSSLLACIIVSIVFLVSLVFSSRVIGVDKVIAYWLTGLSLSLVGLLAYYRGLEFLVSGSIHNSFLAATLGYI FALIFGVNIYYSAIPVGLMLTYLAGYLIHRGIDPNKVSSFMVSFSSSMGVLLAYYVLTMFPAQYSLSSIMLGDPVLMSRQ DVLVTTVISIIVVTVVILIYNKIILLSIDPVSARIAGVRIGYYDFITYTLIGLATIGLLRISGYIMEHVMILLPAIVGAR ISRSSKEHLLLTLLVSTTSTMLGYVAAVNYGLSPVGVSGFILVIAFLYVALTGWGR
Sequences:
>Translated_296_residues MTPGARRRSSSLLACIIVSIVFLVSLVFSSRVIGVDKVIAYWLTGLSLSLVGLLAYYRGLEFLVSGSIHNSFLAATLGYI FALIFGVNIYYSAIPVGLMLTYLAGYLIHRGIDPNKVSSFMVSFSSSMGVLLAYYVLTMFPAQYSLSSIMLGDPVLMSRQ DVLVTTVISIIVVTVVILIYNKIILLSIDPVSARIAGVRIGYYDFITYTLIGLATIGLLRISGYIMEHVMILLPAIVGAR ISRSSKEHLLLTLLVSTTSTMLGYVAAVNYGLSPVGVSGFILVIAFLYVALTGWGR >Mature_295_residues TPGARRRSSSLLACIIVSIVFLVSLVFSSRVIGVDKVIAYWLTGLSLSLVGLLAYYRGLEFLVSGSIHNSFLAATLGYIF ALIFGVNIYYSAIPVGLMLTYLAGYLIHRGIDPNKVSSFMVSFSSSMGVLLAYYVLTMFPAQYSLSSIMLGDPVLMSRQD VLVTTVISIIVVTVVILIYNKIILLSIDPVSARIAGVRIGYYDFITYTLIGLATIGLLRISGYIMEHVMILLPAIVGARI SRSSKEHLLLTLLVSTTSTMLGYVAAVNYGLSPVGVSGFILVIAFLYVALTGWGR
Specific function: Unknown
COG id: COG1108
COG function: function code P; ABC-type Mn2+/Zn2+ transport systems, permease components
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 32069; Mature: 31938
Theoretical pI: Translated: 9.74; Mature: 9.74
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 3.4 %Met (Translated Protein) 3.7 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 3.1 %Met (Mature Protein) 3.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTPGARRRSSSLLACIIVSIVFLVSLVFSSRVIGVDKVIAYWLTGLSLSLVGLLAYYRGL CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH EFLVSGSIHNSFLAATLGYIFALIFGVNIYYSAIPVGLMLTYLAGYLIHRGIDPNKVSSF HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH MVSFSSSMGVLLAYYVLTMFPAQYSLSSIMLGDPVLMSRQDVLVTTVISIIVVTVVILIY HHHHHCCHHHHHHHHHHHHHCHHHHHHHHHCCCCHHHCCCHHHHHHHHHHHHHHHHHHHH NKIILLSIDPVSARIAGVRIGYYDFITYTLIGLATIGLLRISGYIMEHVMILLPAIVGAR CCEEEEEECCHHHHHHHEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH ISRSSKEHLLLTLLVSTTSTMLGYVAAVNYGLSPVGVSGFILVIAFLYVALTGWGR HCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCC >Mature Secondary Structure TPGARRRSSSLLACIIVSIVFLVSLVFSSRVIGVDKVIAYWLTGLSLSLVGLLAYYRGL CCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH EFLVSGSIHNSFLAATLGYIFALIFGVNIYYSAIPVGLMLTYLAGYLIHRGIDPNKVSSF HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH MVSFSSSMGVLLAYYVLTMFPAQYSLSSIMLGDPVLMSRQDVLVTTVISIIVVTVVILIY HHHHHCCHHHHHHHHHHHHHCHHHHHHHHHCCCCHHHCCCHHHHHHHHHHHHHHHHHHHH NKIILLSIDPVSARIAGVRIGYYDFITYTLIGLATIGLLRISGYIMEHVMILLPAIVGAR CCEEEEEECCHHHHHHHEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH ISRSSKEHLLLTLLVSTTSTMLGYVAAVNYGLSPVGVSGFILVIAFLYVALTGWGR HCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA