| Definition | Desulfurococcus kamchatkensis 1221n chromosome, complete genome. |
|---|---|
| Accession | NC_011766 |
| Length | 1,365,223 |
Click here to switch to the map view.
The map label for this gene is dppD [C]
Identifier: 218883600
GI number: 218883600
Start: 269789
End: 270784
Strand: Direct
Name: dppD [C]
Synonym: DKAM_0289
Alternate gene names: 218883600
Gene position: 269789-270784 (Clockwise)
Preceding gene: 218883599
Following gene: 218883601
Centisome position: 19.76
GC content: 47.69
Gene sequence:
>996_bases ATGAGTATTGGGGGAGACCCGGTTCTAAGTGTTAGAAACCTCGATGTCAAATTCTACACCTACGCTGGAGTAGTACACGC CGTATCAAACGTCTCATTCGACGTCTATAAGGGTGAGATAGTCGCATTAGTTGGTGAAACAGGGTGTGGGAAATCCGTGA CTACGAAGGCTATTACAAGGCTGATAGATCCACCCGGGAGAATAGAGGGCGGTAAAGCCTATTTCAGGAGAAGGAATGGC GAGGTAGTCGACTTGTTAAGTCTAAGTGATGAAGAGATAAGGGATATAAGAGGGAATGAGATAGCATACGTGTTCCAAGA TCCTACATCAGCCCTCGACCCTCTCTACACTATTGGACACCACTTCTATGAAACAATGATTGACCATAGGAAGATAGATA AGAAGAACGCCATCCAGCACGCCGTAAACCTCCTCAAGGAAACACTTATCCCGAGCCCTGAGTCAAGAGTAAAGAACTAC CCCCATGAATTATCCGGAGGCATGAGGCAGAGATCAGTGATAGCCATAGGATTAAGCAATAGCCCAGTGCTCCTGATAGC TGATGAGCCCACAACTAACCTAGACGTCACCATACAGGCTCAGATCCTAGAGCTGATAAAGGATCTCCAGGCAAAGCACG GGATGAGCGTTATCCTCATTACACACAACCTGGGTGTTGTAGCAGAGGTAGCACACAGGGTGTACGTGATGTATGCTGGC AAAATAGTTGAGGAGGCACCAGTCGAGGAGTTATTTGAAAACCCCCAGCACCCATACACCAGGCTATTATTGAGAACGGT GCCCGATCCAACCAAGAAGATTGAGAAACTGGAATCGATACCTGGAACTGTTCCAAGCCTCATTAACCCGCTACCTGGAT GCAGGTTCAGGGATAGATGTCCATTTGCATCGGAGAAGTGCCTAGAAGAACCCCCTATGGTTGAAGTGGGTAAAGCACAC CAGGTTTACTGTTGGCTACATGCTGTAAAGGGGTGA
Upstream 100 bases:
>100_bases TAATAGCCCTCGGCTGGAACCTACTCGGGGATGCATTAAGGGATATACTTGACCCGAGAACCAGAAGGGCAATAGAGTTT ACTGAGGGAGGTGAGAAGAA
Downstream 100 bases:
>100_bases TACAGGGATGAGTGAGGCATTAATAGATGTGGTAAACCTGAAGAAATACTTCAAGGTTAGAGGGTTATTCTCAACGAAAC TAGTTAAGGCTGTAGATGAT
Product: oligopeptide/dipeptide ABC transporter ATPase
Products: ADP; phosphate; dipeptides [Cytoplasm] [C]
Alternate protein names: NA
Number of amino acids: Translated: 331; Mature: 330
Protein sequence:
>331_residues MSIGGDPVLSVRNLDVKFYTYAGVVHAVSNVSFDVYKGEIVALVGETGCGKSVTTKAITRLIDPPGRIEGGKAYFRRRNG EVVDLLSLSDEEIRDIRGNEIAYVFQDPTSALDPLYTIGHHFYETMIDHRKIDKKNAIQHAVNLLKETLIPSPESRVKNY PHELSGGMRQRSVIAIGLSNSPVLLIADEPTTNLDVTIQAQILELIKDLQAKHGMSVILITHNLGVVAEVAHRVYVMYAG KIVEEAPVEELFENPQHPYTRLLLRTVPDPTKKIEKLESIPGTVPSLINPLPGCRFRDRCPFASEKCLEEPPMVEVGKAH QVYCWLHAVKG
Sequences:
>Translated_331_residues MSIGGDPVLSVRNLDVKFYTYAGVVHAVSNVSFDVYKGEIVALVGETGCGKSVTTKAITRLIDPPGRIEGGKAYFRRRNG EVVDLLSLSDEEIRDIRGNEIAYVFQDPTSALDPLYTIGHHFYETMIDHRKIDKKNAIQHAVNLLKETLIPSPESRVKNY PHELSGGMRQRSVIAIGLSNSPVLLIADEPTTNLDVTIQAQILELIKDLQAKHGMSVILITHNLGVVAEVAHRVYVMYAG KIVEEAPVEELFENPQHPYTRLLLRTVPDPTKKIEKLESIPGTVPSLINPLPGCRFRDRCPFASEKCLEEPPMVEVGKAH QVYCWLHAVKG >Mature_330_residues SIGGDPVLSVRNLDVKFYTYAGVVHAVSNVSFDVYKGEIVALVGETGCGKSVTTKAITRLIDPPGRIEGGKAYFRRRNGE VVDLLSLSDEEIRDIRGNEIAYVFQDPTSALDPLYTIGHHFYETMIDHRKIDKKNAIQHAVNLLKETLIPSPESRVKNYP HELSGGMRQRSVIAIGLSNSPVLLIADEPTTNLDVTIQAQILELIKDLQAKHGMSVILITHNLGVVAEVAHRVYVMYAGK IVEEAPVEELFENPQHPYTRLLLRTVPDPTKKIEKLESIPGTVPSLINPLPGCRFRDRCPFASEKCLEEPPMVEVGKAHQ VYCWLHAVKG
Specific function: Probably part of a binding-protein-dependent transport system y4tOPQRS for a peptide. Probably responsible for energy coupling to the transport system [H]
COG id: COG0444
COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component
Gene ontology:
Cell location: Cell inner membrane; Peripheral membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 ABC transporter domain [H]
Homologues:
Organism=Homo sapiens, GI255708477, Length=235, Percent_Identity=27.6595744680851, Blast_Score=70, Evalue=2e-12, Organism=Homo sapiens, GI9961252, Length=247, Percent_Identity=30.3643724696356, Blast_Score=70, Evalue=2e-12, Organism=Homo sapiens, GI148612844, Length=235, Percent_Identity=27.6595744680851, Blast_Score=70, Evalue=2e-12, Organism=Homo sapiens, GI4505771, Length=247, Percent_Identity=30.3643724696356, Blast_Score=70, Evalue=2e-12, Organism=Homo sapiens, GI9961250, Length=247, Percent_Identity=30.3643724696356, Blast_Score=70, Evalue=3e-12, Organism=Homo sapiens, GI27436953, Length=224, Percent_Identity=29.4642857142857, Blast_Score=70, Evalue=4e-12, Organism=Homo sapiens, GI21536376, Length=236, Percent_Identity=27.1186440677966, Blast_Score=68, Evalue=1e-11, Organism=Homo sapiens, GI42490749, Length=239, Percent_Identity=27.6150627615063, Blast_Score=67, Evalue=2e-11, Organism=Escherichia coli, GI1789963, Length=318, Percent_Identity=45.2830188679245, Blast_Score=283, Evalue=1e-77, Organism=Escherichia coli, GI145693107, Length=263, Percent_Identity=47.148288973384, Blast_Score=251, Evalue=4e-68, Organism=Escherichia coli, GI48994883, Length=321, Percent_Identity=40.4984423676012, Blast_Score=249, Evalue=1e-67, Organism=Escherichia coli, GI1787759, Length=326, Percent_Identity=41.1042944785276, Blast_Score=248, Evalue=4e-67, Organism=Escherichia coli, GI1788506, Length=266, Percent_Identity=44.7368421052632, Blast_Score=217, Evalue=1e-57, Organism=Escherichia coli, GI1787500, Length=312, Percent_Identity=38.4615384615385, Blast_Score=207, Evalue=5e-55, Organism=Escherichia coli, GI1787548, Length=330, Percent_Identity=36.0606060606061, Blast_Score=204, Evalue=4e-54, Organism=Escherichia coli, GI1789962, Length=304, Percent_Identity=35.5263157894737, Blast_Score=193, Evalue=1e-50, Organism=Escherichia coli, GI1787758, Length=331, Percent_Identity=31.7220543806647, Blast_Score=172, Evalue=3e-44, Organism=Escherichia coli, GI1789890, Length=241, Percent_Identity=39.4190871369295, Blast_Score=142, Evalue=3e-35, Organism=Escherichia coli, GI48994997, Length=261, Percent_Identity=32.9501915708812, Blast_Score=141, Evalue=6e-35, Organism=Escherichia coli, GI1789032, Length=299, Percent_Identity=29.0969899665552, Blast_Score=119, Evalue=4e-28, Organism=Escherichia coli, GI1789891, Length=223, Percent_Identity=34.9775784753363, Blast_Score=116, Evalue=2e-27, Organism=Escherichia coli, GI1787547, Length=269, Percent_Identity=27.5092936802974, Blast_Score=113, Evalue=2e-26, Organism=Escherichia coli, GI1789672, Length=266, Percent_Identity=32.7067669172932, Blast_Score=110, Evalue=2e-25, Organism=Escherichia coli, GI1790162, Length=260, Percent_Identity=28.8461538461538, Blast_Score=107, Evalue=1e-24, Organism=Escherichia coli, GI1788225, Length=256, Percent_Identity=30.46875, Blast_Score=106, Evalue=2e-24, Organism=Escherichia coli, GI1786398, Length=286, Percent_Identity=28.3216783216783, Blast_Score=103, Evalue=2e-23, Organism=Escherichia coli, GI1787029, Length=244, Percent_Identity=30.7377049180328, Blast_Score=99, Evalue=3e-22, Organism=Escherichia coli, GI87081791, Length=291, Percent_Identity=29.553264604811, Blast_Score=97, Evalue=2e-21, Organism=Escherichia coli, GI1787089, Length=239, Percent_Identity=33.0543933054393, Blast_Score=95, Evalue=5e-21, Organism=Escherichia coli, GI1786872, Length=226, Percent_Identity=29.2035398230088, Blast_Score=87, Evalue=1e-18, Organism=Escherichia coli, GI87081834, Length=239, Percent_Identity=29.7071129707113, Blast_Score=86, Evalue=4e-18, Organism=Escherichia coli, GI1787105, Length=248, Percent_Identity=27.4193548387097, Blast_Score=85, Evalue=7e-18, Organism=Escherichia coli, GI1787370, Length=234, Percent_Identity=25.6410256410256, Blast_Score=84, Evalue=1e-17, Organism=Escherichia coli, GI1789873, Length=232, Percent_Identity=29.3103448275862, Blast_Score=84, Evalue=1e-17, Organism=Escherichia coli, GI1788644, Length=194, Percent_Identity=30.9278350515464, Blast_Score=84, Evalue=2e-17, Organism=Escherichia coli, GI1787712, Length=242, Percent_Identity=28.5123966942149, Blast_Score=82, Evalue=4e-17, Organism=Escherichia coli, GI1786703, Length=228, Percent_Identity=31.140350877193, Blast_Score=79, Evalue=4e-16, Organism=Escherichia coli, GI87082267, Length=236, Percent_Identity=27.1186440677966, Blast_Score=78, Evalue=6e-16, Organism=Escherichia coli, GI1788450, Length=275, Percent_Identity=25.0909090909091, Blast_Score=77, Evalue=1e-15, Organism=Escherichia coli, GI87081709, Length=249, Percent_Identity=24.0963855421687, Blast_Score=77, Evalue=2e-15, Organism=Escherichia coli, GI1788761, Length=250, Percent_Identity=26, Blast_Score=77, Evalue=2e-15, Organism=Escherichia coli, GI1786803, Length=227, Percent_Identity=26.431718061674, Blast_Score=76, Evalue=2e-15, Organism=Escherichia coli, GI1787792, Length=247, Percent_Identity=27.9352226720648, Blast_Score=75, Evalue=5e-15, Organism=Escherichia coli, GI1790467, Length=237, Percent_Identity=27.8481012658228, Blast_Score=75, Evalue=8e-15, Organism=Escherichia coli, GI1789991, Length=236, Percent_Identity=31.3559322033898, Blast_Score=74, Evalue=9e-15, Organism=Escherichia coli, GI1787164, Length=215, Percent_Identity=27.4418604651163, Blast_Score=71, Evalue=1e-13, Organism=Escherichia coli, GI1790525, Length=231, Percent_Identity=28.5714285714286, Blast_Score=65, Evalue=8e-12, Organism=Escherichia coli, GI87082268, Length=244, Percent_Identity=27.0491803278689, Blast_Score=65, Evalue=9e-12, Organism=Escherichia coli, GI1790190, Length=228, Percent_Identity=26.7543859649123, Blast_Score=64, Evalue=1e-11, Organism=Escherichia coli, GI1786345, Length=256, Percent_Identity=23.046875, Blast_Score=64, Evalue=1e-11, Organism=Escherichia coli, GI1789586, Length=245, Percent_Identity=25.7142857142857, Blast_Score=64, Evalue=2e-11, Organism=Escherichia coli, GI1786698, Length=217, Percent_Identity=27.1889400921659, Blast_Score=64, Evalue=2e-11, Organism=Escherichia coli, GI1790534, Length=239, Percent_Identity=28.4518828451883, Blast_Score=62, Evalue=6e-11, Organism=Escherichia coli, GI1790544, Length=249, Percent_Identity=24.4979919678715, Blast_Score=61, Evalue=1e-10, Organism=Caenorhabditis elegans, GI193202349, Length=231, Percent_Identity=28.1385281385281, Blast_Score=83, Evalue=2e-16, Organism=Caenorhabditis elegans, GI115534520, Length=252, Percent_Identity=27.7777777777778, Blast_Score=82, Evalue=5e-16, Organism=Caenorhabditis elegans, GI193209708, Length=277, Percent_Identity=28.158844765343, Blast_Score=80, Evalue=1e-15, Organism=Caenorhabditis elegans, GI17558664, Length=247, Percent_Identity=26.7206477732794, Blast_Score=72, Evalue=4e-13, Organism=Caenorhabditis elegans, GI17541710, Length=250, Percent_Identity=26.8, Blast_Score=70, Evalue=1e-12, Organism=Caenorhabditis elegans, GI71984940, Length=240, Percent_Identity=28.75, Blast_Score=70, Evalue=1e-12, Organism=Caenorhabditis elegans, GI25146777, Length=231, Percent_Identity=28.5714285714286, Blast_Score=69, Evalue=3e-12, Organism=Caenorhabditis elegans, GI17567265, Length=233, Percent_Identity=30.9012875536481, Blast_Score=69, Evalue=4e-12, Organism=Caenorhabditis elegans, GI17569145, Length=240, Percent_Identity=27.0833333333333, Blast_Score=68, Evalue=5e-12, Organism=Caenorhabditis elegans, GI71992290, Length=247, Percent_Identity=29.1497975708502, Blast_Score=65, Evalue=6e-11, Organism=Saccharomyces cerevisiae, GI6324985, Length=274, Percent_Identity=26.2773722627737, Blast_Score=71, Evalue=2e-13, Organism=Drosophila melanogaster, GI85726357, Length=261, Percent_Identity=26.4367816091954, Blast_Score=78, Evalue=6e-15, Organism=Drosophila melanogaster, GI17136662, Length=259, Percent_Identity=28.5714285714286, Blast_Score=77, Evalue=2e-14, Organism=Drosophila melanogaster, GI85725262, Length=225, Percent_Identity=30.2222222222222, Blast_Score=66, Evalue=3e-11, Organism=Drosophila melanogaster, GI281362751, Length=244, Percent_Identity=27.8688524590164, Blast_Score=65, Evalue=5e-11, Organism=Drosophila melanogaster, GI23397593, Length=229, Percent_Identity=27.5109170305677, Blast_Score=65, Evalue=5e-11, Organism=Drosophila melanogaster, GI116007184, Length=220, Percent_Identity=25.9090909090909, Blast_Score=65, Evalue=6e-11, Organism=Drosophila melanogaster, GI221500365, Length=220, Percent_Identity=25.9090909090909, Blast_Score=65, Evalue=8e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003439 - InterPro: IPR017871 - InterPro: IPR003593 - InterPro: IPR010066 - InterPro: IPR013563 [H]
Pfam domain/function: PF00005 ABC_tran; PF08352 oligo_HPY [H]
EC number: NA
Molecular weight: Translated: 36764; Mature: 36633
Theoretical pI: Translated: 6.79; Mature: 6.79
Prosite motif: PS50893 ABC_TRANSPORTER_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSIGGDPVLSVRNLDVKFYTYAGVVHAVSNVSFDVYKGEIVALVGETGCGKSVTTKAITR CCCCCCCEEEEEECCEEEEHHHHHHHHHHCCEEEEECCEEEEEEECCCCCCHHHHHHHHH LIDPPGRIEGGKAYFRRRNGEVVDLLSLSDEEIRDIRGNEIAYVFQDPTSALDPLYTIGH HCCCCCCCCCCHHHHHCCCCCEEEEECCCCHHHHHCCCCEEEEEEECCHHHHHHHHHHHH HFYETMIDHRKIDKKNAIQHAVNLLKETLIPSPESRVKNYPHELSGGMRQRSVIAIGLSN HHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCHHHHHCCCHHHCCCCCCCEEEEEEECC SPVLLIADEPTTNLDVTIQAQILELIKDLQAKHGMSVILITHNLGVVAEVAHRVYVMYAG CCEEEEECCCCCCEEEEEHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHHH KIVEEAPVEELFENPQHPYTRLLLRTVPDPTKKIEKLESIPGTVPSLINPLPGCRFRDRC HHHHCCCHHHHHCCCCCHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHCCCCCCCCCCCC PFASEKCLEEPPMVEVGKAHQVYCWLHAVKG CCCHHHHCCCCCCEECCCCCEEEEEEEECCC >Mature Secondary Structure SIGGDPVLSVRNLDVKFYTYAGVVHAVSNVSFDVYKGEIVALVGETGCGKSVTTKAITR CCCCCCEEEEEECCEEEEHHHHHHHHHHCCEEEEECCEEEEEEECCCCCCHHHHHHHHH LIDPPGRIEGGKAYFRRRNGEVVDLLSLSDEEIRDIRGNEIAYVFQDPTSALDPLYTIGH HCCCCCCCCCCHHHHHCCCCCEEEEECCCCHHHHHCCCCEEEEEEECCHHHHHHHHHHHH HFYETMIDHRKIDKKNAIQHAVNLLKETLIPSPESRVKNYPHELSGGMRQRSVIAIGLSN HHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCHHHHHCCCHHHCCCCCCCEEEEEEECC SPVLLIADEPTTNLDVTIQAQILELIKDLQAKHGMSVILITHNLGVVAEVAHRVYVMYAG CCEEEEECCCCCCEEEEEHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHHH KIVEEAPVEELFENPQHPYTRLLLRTVPDPTKKIEKLESIPGTVPSLINPLPGCRFRDRC HHHHCCCHHHHHCCCCCHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHCCCCCCCCCCCC PFASEKCLEEPPMVEVGKAHQVYCWLHAVKG CCCHHHHCCCCCCEECCCCCEEEEEEEECCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: ATP; dipeptides [Periplasm]; H2O [C]
Specific reaction: ATP + dipeptides [Periplasm] + H2O = ADP + phosphate + dipeptides [Cytoplasm] [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 8796346; 9163424 [H]