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The map label for this gene is dppC [H]

Identifier: 218883599

GI number: 218883599

Start: 268686

End: 269792

Strand: Direct

Name: dppC [H]

Synonym: DKAM_0288

Alternate gene names: 218883599

Gene position: 268686-269792 (Clockwise)

Preceding gene: 218883598

Following gene: 218883600

Centisome position: 19.68

GC content: 46.34

Gene sequence:

>1107_bases
GTGGTGTTAATGGAGGCAATATATAAACTACTCGTTAAGATAATAGATAGCTATGCATCGCTGAGAGATAAGATCAATAA
GGGTTGGAAGGAGAAGAATAGCTCCAGGATACGTGAATGGAAGCTCATGGCTTACGCTTTCAGTAAGAGCAAGATCGGGG
TGCTTGGTGGAATACTAGTGTTCATCGAGGTAGTACTAGCCATAATAGGCCCTATTATTGCATGGGAACCCTACTGGGTT
TACCCGGTGATAAATAACCCCGATCTAAAACTACTACCCCCATGTATCCCACCATGGTGTACTGGGGGTCCATTACTTGG
AACCGATGAATGGGGGAGGGATCTACTCTCTATAACACTCGTGGGTGTCAGGATCTCCTTCATTATCTCAATCCTAGTAG
TATTATTCGGGGCACCATTAGGTATAATACTGGGACTGGTAGCAGGTTACAAGGGTGGTGTAATCGATGAAATAATAATG
AGGCTTACAGACATATTCATGGCTTTCCCAGCGCTAGTTCTCGCAATAGCATTTGCTGCAGTGCTGCCAGAAAGGCTCAG
ACTACTCTTGGAGTCGAACACCATGCTAAGAGACTTCCTTGCAGCACTTCTAGGATTAAGAGTGAATGAGTATCCCCAGA
TAGCTTCACTCCTAGCTGTATGGATAGCCATGATACTAGTATGGTGGCCCGGTTACGCCAGGATAGTTAGGGGAAGCGTG
TTAAGTGCCAAGGAGCAAACGTTTGTGGAGGCTGCCAAAGTACTTGGCTTATCCACAAGGAGGATACTCTTCAAGCATAT
ATTGCCAAACATTATTTCCCCAATTATAGTCATGATGACGTTTGATATAGCTACAGCAGCGTTATTCGCTGCCACACTTT
CATTCCTGGGTCTCGGTCCGCAGGAGCCTGTCCCCGAGCTCGGCTTCATAATATCCAAGGCCGGCAACTGGTTCCCGCAT
AGGAGCTACCATATCGTTACCTTTGTAGGCATAGTCCTCTTGATAATAGCCCTCGGCTGGAACCTACTCGGGGATGCATT
AAGGGATATACTTGACCCGAGAACCAGAAGGGCAATAGAGTTTACTGAGGGAGGTGAGAAGAAATGA

Upstream 100 bases:

>100_bases
AATTGGTGGTACCTTCCTGGTAGCCATAGTATATGTAACGGTGAACCTAATAGTTGACATAATCTATGCGGTCCTCGACC
CGAGGATAAGATATTAAGGG

Downstream 100 bases:

>100_bases
GTATTGGGGGAGACCCGGTTCTAAGTGTTAGAAACCTCGATGTCAAATTCTACACCTACGCTGGAGTAGTACACGCCGTA
TCAAACGTCTCATTCGACGT

Product: binding-protein-dependent transport systems inner membrane component

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 368; Mature: 368

Protein sequence:

>368_residues
MVLMEAIYKLLVKIIDSYASLRDKINKGWKEKNSSRIREWKLMAYAFSKSKIGVLGGILVFIEVVLAIIGPIIAWEPYWV
YPVINNPDLKLLPPCIPPWCTGGPLLGTDEWGRDLLSITLVGVRISFIISILVVLFGAPLGIILGLVAGYKGGVIDEIIM
RLTDIFMAFPALVLAIAFAAVLPERLRLLLESNTMLRDFLAALLGLRVNEYPQIASLLAVWIAMILVWWPGYARIVRGSV
LSAKEQTFVEAAKVLGLSTRRILFKHILPNIISPIIVMMTFDIATAALFAATLSFLGLGPQEPVPELGFIISKAGNWFPH
RSYHIVTFVGIVLLIIALGWNLLGDALRDILDPRTRRAIEFTEGGEKK

Sequences:

>Translated_368_residues
MVLMEAIYKLLVKIIDSYASLRDKINKGWKEKNSSRIREWKLMAYAFSKSKIGVLGGILVFIEVVLAIIGPIIAWEPYWV
YPVINNPDLKLLPPCIPPWCTGGPLLGTDEWGRDLLSITLVGVRISFIISILVVLFGAPLGIILGLVAGYKGGVIDEIIM
RLTDIFMAFPALVLAIAFAAVLPERLRLLLESNTMLRDFLAALLGLRVNEYPQIASLLAVWIAMILVWWPGYARIVRGSV
LSAKEQTFVEAAKVLGLSTRRILFKHILPNIISPIIVMMTFDIATAALFAATLSFLGLGPQEPVPELGFIISKAGNWFPH
RSYHIVTFVGIVLLIIALGWNLLGDALRDILDPRTRRAIEFTEGGEKK
>Mature_368_residues
MVLMEAIYKLLVKIIDSYASLRDKINKGWKEKNSSRIREWKLMAYAFSKSKIGVLGGILVFIEVVLAIIGPIIAWEPYWV
YPVINNPDLKLLPPCIPPWCTGGPLLGTDEWGRDLLSITLVGVRISFIISILVVLFGAPLGIILGLVAGYKGGVIDEIIM
RLTDIFMAFPALVLAIAFAAVLPERLRLLLESNTMLRDFLAALLGLRVNEYPQIASLLAVWIAMILVWWPGYARIVRGSV
LSAKEQTFVEAAKVLGLSTRRILFKHILPNIISPIIVMMTFDIATAALFAATLSFLGLGPQEPVPELGFIISKAGNWFPH
RSYHIVTFVGIVLLIIALGWNLLGDALRDILDPRTRRAIEFTEGGEKK

Specific function: Part of the binding-protein-dependent transport system for dipeptides; probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG1173

COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport systems, permease components

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787054, Length=342, Percent_Identity=33.3333333333333, Blast_Score=165, Evalue=3e-42,
Organism=Escherichia coli, GI1787760, Length=326, Percent_Identity=32.2085889570552, Blast_Score=155, Evalue=4e-39,
Organism=Escherichia coli, GI1789964, Length=287, Percent_Identity=35.8885017421603, Blast_Score=134, Evalue=1e-32,
Organism=Escherichia coli, GI1787498, Length=317, Percent_Identity=29.6529968454259, Blast_Score=119, Evalue=3e-28,
Organism=Escherichia coli, GI1789889, Length=280, Percent_Identity=31.7857142857143, Blast_Score=114, Evalue=1e-26,
Organism=Escherichia coli, GI1788505, Length=262, Percent_Identity=26.3358778625954, Blast_Score=91, Evalue=1e-19,
Organism=Escherichia coli, GI1787549, Length=259, Percent_Identity=29.3436293436293, Blast_Score=83, Evalue=4e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 40799; Mature: 40799

Theoretical pI: Translated: 9.75; Mature: 9.75

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVLMEAIYKLLVKIIDSYASLRDKINKGWKEKNSSRIREWKLMAYAFSKSKIGVLGGILV
CCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHH
FIEVVLAIIGPIIAWEPYWVYPVINNPDLKLLPPCIPPWCTGGPLLGTDEWGRDLLSITL
HHHHHHHHHHHHHHCCCEEEEEEECCCCCCEECCCCCCCCCCCCCCCCCHHHHHHHHHHH
VGVRISFIISILVVLFGAPLGIILGLVAGYKGGVIDEIIMRLTDIFMAFPALVLAIAFAA
HHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
VLPERLRLLLESNTMLRDFLAALLGLRVNEYPQIASLLAVWIAMILVWWPGYARIVRGSV
HHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
LSAKEQTFVEAAKVLGLSTRRILFKHILPNIISPIIVMMTFDIATAALFAATLSFLGLGP
HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
QEPVPELGFIISKAGNWFPHRSYHIVTFVGIVLLIIALGWNLLGDALRDILDPRTRRAIE
CCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHCEEE
FTEGGEKK
ECCCCCCC
>Mature Secondary Structure
MVLMEAIYKLLVKIIDSYASLRDKINKGWKEKNSSRIREWKLMAYAFSKSKIGVLGGILV
CCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHH
FIEVVLAIIGPIIAWEPYWVYPVINNPDLKLLPPCIPPWCTGGPLLGTDEWGRDLLSITL
HHHHHHHHHHHHHHCCCEEEEEEECCCCCCEECCCCCCCCCCCCCCCCCHHHHHHHHHHH
VGVRISFIISILVVLFGAPLGIILGLVAGYKGGVIDEIIMRLTDIFMAFPALVLAIAFAA
HHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
VLPERLRLLLESNTMLRDFLAALLGLRVNEYPQIASLLAVWIAMILVWWPGYARIVRGSV
HHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
LSAKEQTFVEAAKVLGLSTRRILFKHILPNIISPIIVMMTFDIATAALFAATLSFLGLGP
HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
QEPVPELGFIISKAGNWFPHRSYHIVTFVGIVLLIIALGWNLLGDALRDILDPRTRRAIE
CCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHCEEE
FTEGGEKK
ECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 7542800; 8550458 [H]