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The map label for this gene is hofQ [C]

Identifier: 218710406

GI number: 218710406

Start: 2613149

End: 2614603

Strand: Reverse

Name: hofQ [C]

Synonym: VS_2443

Alternate gene names: 218710406

Gene position: 2614603-2613149 (Counterclockwise)

Preceding gene: 218710407

Following gene: 218710405

Centisome position: 79.25

GC content: 43.78

Gene sequence:

>1455_bases
ATGAAAATAATAATAACGTGTATTTTGAGCTTCGTTTGTTTCTCTACACTGAGCTTTGCTGCTCTACAAACGGGTAAAAC
GGTAACGGTTCCTCATCACAAATCAACACATGTGGTGTTGTCAGGGAAAGCGAGCAAAGTGTCGCTTGGTGATCCTGATG
TACTTGATATTGTGATGTTGAAATCGAGCGAGCTGTTTTTAATCGGAAAAAAATTAGGTGCTACTAACCTAATGGCGTGG
GACTCCCGTGGCCAGCTGATTGAATCGATCAACATCGAAGTCACTCATGATCTTAATAGCTTAAAAGCGAAGTTATATGA
GTTTCTTCCTGATGAAACTATAGAGGTGCACAGTGCCCAGAATCGCTTGCTGCTGAGTGGGCAGGTGAGTAATCAGCAAC
AAATGAATGTAGCGATGCGAATAGCAGAAACCTACTCTTCGGGTGAAACGGCTGATGAATCGAAGGAAAGTGGTAGCGAG
CAAGCTGCAGCGACAGGTGTTATCAACTTGATGTCTATTGGTGGTGCTCAACAAGTTATGTTGGAAGTGACGGTTGCCGA
GGTTCAAAGAAGCTTGGTGAGAAAATTTGATGCAAACTTTCACTTCTTCCAAACGAGCGGATCGAATATTTCTTGGGGGG
CGTCGTCAGTTCCTGCTGGTGTTCTAGGGGCTACGCCAATCTTTGATATTCCAACCTCTACTGATTACGGCATTTTAGGC
TCGTTTATTGATAGTAATACCCTGTTTACATTCGCTCTGGATGTCGCAAAACAGAATGGTGTGGCGAAAGTATTAGCTGA
GCCTAACTTAACGGCATTAAGTGGCTCAAAGGCTGAGTTTTTAGCGGGTGGTGAATTCCCTATCCCTGTGCCAGATGAAG
ATGGCATTACGATTGAATATAAAGAGTATGGAGTTGGATTAAAATTTATCCCAACGGTTCTGAGTGATAAAAAGATCAAT
CTAAACTTGGCTGTTGATGTGAGTGAAATTGCCAATAGCAGCTCGCTAACGATTGACCCAGGAACAACCAATGCGACCTA
CTTTATCCCACCAATTACTCGTCGAAGCGCGTCATCGACGCTTGAGCTAGCCGACGGACAAACTATTGGTATTGCTGGAT
TGCTCAGCGAGAATGTTAGGGATGTGAGTAACAAAATGCCGGGTATTGGTGATGTCCCCATCTTAGGGCAACTCTTTAAT
AGTCAAGAGTATGTATCTGGTGAAACAGAACTTGTCATTCTTGTCACCCCGCGACTTGCGAGTCCTATTGACCGAAGTAA
AGTAACGTTACCAACAGACGCCTTTGTTGACCCGAATGATTTGGAATATTACTTATTAGGTCGAAGCGCTTATATCGCTG
AACCGTCTGAATCGGATTCAGAGCAATCTCAAGCTTCACAGGGAATATCACCAACAGATGGTGGTAGCGAAGGCTCATTT
GGACATGATTTATAA

Upstream 100 bases:

>100_bases
TTGAGAAAAAGGTTGTTCGTCGATACGTACCTAAGCCGAGTGTGACGATCATTAAAGGTACTCAAGCATCTAGTGTTCGC
GTCAAGGATTGAGGTGAGTT

Downstream 100 bases:

>100_bases
GGAGATAGATATGATTAGAATAATGATGGTCTTTCTCGTAATGGTGTTAGTTGGCTGTGCTAATGATGCTCGTTTAGGGT
ATTCGGTAGCACTCGTAAAA

Product: Flp pilus assembly protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 484; Mature: 484

Protein sequence:

>484_residues
MKIIITCILSFVCFSTLSFAALQTGKTVTVPHHKSTHVVLSGKASKVSLGDPDVLDIVMLKSSELFLIGKKLGATNLMAW
DSRGQLIESINIEVTHDLNSLKAKLYEFLPDETIEVHSAQNRLLLSGQVSNQQQMNVAMRIAETYSSGETADESKESGSE
QAAATGVINLMSIGGAQQVMLEVTVAEVQRSLVRKFDANFHFFQTSGSNISWGASSVPAGVLGATPIFDIPTSTDYGILG
SFIDSNTLFTFALDVAKQNGVAKVLAEPNLTALSGSKAEFLAGGEFPIPVPDEDGITIEYKEYGVGLKFIPTVLSDKKIN
LNLAVDVSEIANSSSLTIDPGTTNATYFIPPITRRSASSTLELADGQTIGIAGLLSENVRDVSNKMPGIGDVPILGQLFN
SQEYVSGETELVILVTPRLASPIDRSKVTLPTDAFVDPNDLEYYLLGRSAYIAEPSESDSEQSQASQGISPTDGGSEGSF
GHDL

Sequences:

>Translated_484_residues
MKIIITCILSFVCFSTLSFAALQTGKTVTVPHHKSTHVVLSGKASKVSLGDPDVLDIVMLKSSELFLIGKKLGATNLMAW
DSRGQLIESINIEVTHDLNSLKAKLYEFLPDETIEVHSAQNRLLLSGQVSNQQQMNVAMRIAETYSSGETADESKESGSE
QAAATGVINLMSIGGAQQVMLEVTVAEVQRSLVRKFDANFHFFQTSGSNISWGASSVPAGVLGATPIFDIPTSTDYGILG
SFIDSNTLFTFALDVAKQNGVAKVLAEPNLTALSGSKAEFLAGGEFPIPVPDEDGITIEYKEYGVGLKFIPTVLSDKKIN
LNLAVDVSEIANSSSLTIDPGTTNATYFIPPITRRSASSTLELADGQTIGIAGLLSENVRDVSNKMPGIGDVPILGQLFN
SQEYVSGETELVILVTPRLASPIDRSKVTLPTDAFVDPNDLEYYLLGRSAYIAEPSESDSEQSQASQGISPTDGGSEGSF
GHDL
>Mature_484_residues
MKIIITCILSFVCFSTLSFAALQTGKTVTVPHHKSTHVVLSGKASKVSLGDPDVLDIVMLKSSELFLIGKKLGATNLMAW
DSRGQLIESINIEVTHDLNSLKAKLYEFLPDETIEVHSAQNRLLLSGQVSNQQQMNVAMRIAETYSSGETADESKESGSE
QAAATGVINLMSIGGAQQVMLEVTVAEVQRSLVRKFDANFHFFQTSGSNISWGASSVPAGVLGATPIFDIPTSTDYGILG
SFIDSNTLFTFALDVAKQNGVAKVLAEPNLTALSGSKAEFLAGGEFPIPVPDEDGITIEYKEYGVGLKFIPTVLSDKKIN
LNLAVDVSEIANSSSLTIDPGTTNATYFIPPITRRSASSTLELADGQTIGIAGLLSENVRDVSNKMPGIGDVPILGQLFN
SQEYVSGETELVILVTPRLASPIDRSKVTLPTDAFVDPNDLEYYLLGRSAYIAEPSESDSEQSQASQGISPTDGGSEGSF
GHDL

Specific function: Involved in the secretion of an unknown compound (Potential) [H]

COG id: COG4964

COG function: function code U; Flp pilus assembly protein, secretin CpaC

Gene ontology:

Cell location: Outer Membrane [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 BON domain [H]

Homologues:

Organism=Escherichia coli, GI1789793, Length=182, Percent_Identity=28.021978021978, Blast_Score=71, Evalue=2e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001775
- InterPro:   IPR004846
- InterPro:   IPR007055 [H]

Pfam domain/function: PF04972 BON; PF00263 Secretin [H]

EC number: NA

Molecular weight: Translated: 51582; Mature: 51582

Theoretical pI: Translated: 4.35; Mature: 4.35

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKIIITCILSFVCFSTLSFAALQTGKTVTVPHHKSTHVVLSGKASKVSLGDPDVLDIVML
CEEHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCEEEEECCCCEEECCCCCEEEEEEE
KSSELFLIGKKLGATNLMAWDSRGQLIESINIEVTHDLNSLKAKLYEFLPDETIEVHSAQ
CCCCEEEEECCCCCCEEEEECCCCCEEEEECEEEEECHHHHHHHHHHHCCCCEEEEECCC
NRLLLSGQVSNQQQMNVAMRIAETYSSGETADESKESGSEQAAATGVINLMSIGGAQQVM
CEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCHHHHCCCHHHHHHHHEEEECCCCHHHEE
LEVTVAEVQRSLVRKFDANFHFFQTSGSNISWGASSVPAGVLGATPIFDIPTSTDYGILG
EEHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCHHH
SFIDSNTLFTFALDVAKQNGVAKVLAEPNLTALSGSKAEFLAGGEFPIPVPDEDGITIEY
HHHCCCEEEEEEEEHHHCCCEEEEEECCCEEEECCCCCEEEECCCCCCCCCCCCCCEEEE
KEYGVGLKFIPTVLSDKKINLNLAVDVSEIANSSSLTIDPGTTNATYFIPPITRRSASST
HHHCCCCEEEHHHHCCCEEEEEEEEEHHHHCCCCCEEECCCCCCCEEEECCCCCCCCCCE
LELADGQTIGIAGLLSENVRDVSNKMPGIGDVPILGQLFNSQEYVSGETELVILVTPRLA
EEECCCCEEEEHHHHHHHHHHHHHCCCCCCCCCHHHHHHCCCHHCCCCCEEEEEECCCCC
SPIDRSKVTLPTDAFVDPNDLEYYLLGRSAYIAEPSESDSEQSQASQGISPTDGGSEGSF
CCCCCCEEECCCCCCCCCCCCEEEEECCEEEEECCCCCCCHHHHHHCCCCCCCCCCCCCC
GHDL
CCCC
>Mature Secondary Structure
MKIIITCILSFVCFSTLSFAALQTGKTVTVPHHKSTHVVLSGKASKVSLGDPDVLDIVML
CEEHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCEEEEECCCCEEECCCCCEEEEEEE
KSSELFLIGKKLGATNLMAWDSRGQLIESINIEVTHDLNSLKAKLYEFLPDETIEVHSAQ
CCCCEEEEECCCCCCEEEEECCCCCEEEEECEEEEECHHHHHHHHHHHCCCCEEEEECCC
NRLLLSGQVSNQQQMNVAMRIAETYSSGETADESKESGSEQAAATGVINLMSIGGAQQVM
CEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCHHHHCCCHHHHHHHHEEEECCCCHHHEE
LEVTVAEVQRSLVRKFDANFHFFQTSGSNISWGASSVPAGVLGATPIFDIPTSTDYGILG
EEHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCHHH
SFIDSNTLFTFALDVAKQNGVAKVLAEPNLTALSGSKAEFLAGGEFPIPVPDEDGITIEY
HHHCCCEEEEEEEEHHHCCCEEEEEECCCEEEECCCCCEEEECCCCCCCCCCCCCCEEEE
KEYGVGLKFIPTVLSDKKINLNLAVDVSEIANSSSLTIDPGTTNATYFIPPITRRSASST
HHHCCCCEEEHHHHCCCEEEEEEEEEHHHHCCCCCEEECCCCCCCEEEECCCCCCCCCCE
LELADGQTIGIAGLLSENVRDVSNKMPGIGDVPILGQLFNSQEYVSGETELVILVTPRLA
EEECCCCEEEEHHHHHHHHHHHHHCCCCCCCCCHHHHHHCCCHHCCCCCEEEEEECCCCC
SPIDRSKVTLPTDAFVDPNDLEYYLLGRSAYIAEPSESDSEQSQASQGISPTDGGSEGSF
CCCCCCEEECCCCCCCCCCCCEEEEECCEEEEECCCCCCCHHHHHHCCCCCCCCCCCCCC
GHDL
CCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]