Definition | Vibrio splendidus LGP32 chromosome 1, complete genome. |
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Accession | NC_011753 |
Length | 3,299,303 |
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The map label for this gene is 218710395
Identifier: 218710395
GI number: 218710395
Start: 2602283
End: 2603212
Strand: Reverse
Name: 218710395
Synonym: VS_2432
Alternate gene names: NA
Gene position: 2603212-2602283 (Counterclockwise)
Preceding gene: 218710396
Following gene: 218710394
Centisome position: 78.9
GC content: 40.75
Gene sequence:
>930_bases ATGAATAGTATAAAAGTTGCAGTATTACTCCCATGTTTTAATGAAGCGGGTGCTATCGGAAAGACAGTTATGTCTTTTAA GCAGGCTTTACCTGATGCGTCTATTTATGTGTATGACAACAACTCAACCGACAACACGGTAAACGAGGCCTTGCAAGCTG GGGTTATTGTTCGACATGAGCCTCGCCAAGGTAAAGGGGAGGTAGTCAGGAGAATGTTCTCTGATATTGATGCTGATATC TATGTGATGGCTGATGGTGATGACACTTACGATGCGTCAATATGCCCTGCGCTGATCGAACAATTGGATAATGAAAAACT CGATATGATTATTGGAAGTCGAGAGCGAGCTTCAATGGCTTATCCCAAAGGGCATATCCTAGGAAATAAGCTGTTTTCAT CGCTGATTAATTTAGCATTCAATGCTCAATTGAGTGATGTGTTTTCTGGTTATCGAATTATGAGCCATCGATTTGTCAAA ACCGTACCTATTTTCAGTGATGGCTTCCAAATAGAAACAGAGCTTACCGTTCATGCGCTACATCATAATATGCCAATCAA AGAAGTTTCGACGCAATATCAATCAAGGCCTGAAGGCACAGTCAGCAAATTGAATACCTTTAGTGATGGGCTCAAAATTC TCAATTTCATTTTGTTCTTATTGAGAGATGTAAAGCCAATGTTTTTCTTTGGCGTGTTGTCTATGTTGCTTTGCTTCATT TCATTGGTTTTAGGAATCCCCGTTATCATCGACTTCATCGATACTGGGCTCGTCGAAAGGGTGCCTACTGCGATTTTGTC TAGCTCAATTGCGTTGATAGCGGTGATGTCTTTTTTCTGTGGGTTGATACTCGACAACGTATCACGAGGTAGGCGAGAGA TGAGGATTCTTTCTATATTAAGAACGAGTGATAAAACGCTATCTGAATAG
Upstream 100 bases:
>100_bases TTATAAACAAATTATACAGCTCAAATGTTCCCAACTGGTTGGAGACCATATATGACGATGTTCCTGATGGCTACCGAATC TTTAGGGTTAGGGAGAGTTT
Downstream 100 bases:
>100_bases GAATCAAGCATGAGAACAAGCAAGGATGAAGACAAAGAGTGGATCGATTATTTGTCCCGTTTCAGTGACGAATATGATGA GCGAGTTTATAACGGCAATA
Product: glycosyltransferase
Products: NA
Alternate protein names: ORF10X9 [H]
Number of amino acids: Translated: 309; Mature: 309
Protein sequence:
>309_residues MNSIKVAVLLPCFNEAGAIGKTVMSFKQALPDASIYVYDNNSTDNTVNEALQAGVIVRHEPRQGKGEVVRRMFSDIDADI YVMADGDDTYDASICPALIEQLDNEKLDMIIGSRERASMAYPKGHILGNKLFSSLINLAFNAQLSDVFSGYRIMSHRFVK TVPIFSDGFQIETELTVHALHHNMPIKEVSTQYQSRPEGTVSKLNTFSDGLKILNFILFLLRDVKPMFFFGVLSMLLCFI SLVLGIPVIIDFIDTGLVERVPTAILSSSIALIAVMSFFCGLILDNVSRGRREMRILSILRTSDKTLSE
Sequences:
>Translated_309_residues MNSIKVAVLLPCFNEAGAIGKTVMSFKQALPDASIYVYDNNSTDNTVNEALQAGVIVRHEPRQGKGEVVRRMFSDIDADI YVMADGDDTYDASICPALIEQLDNEKLDMIIGSRERASMAYPKGHILGNKLFSSLINLAFNAQLSDVFSGYRIMSHRFVK TVPIFSDGFQIETELTVHALHHNMPIKEVSTQYQSRPEGTVSKLNTFSDGLKILNFILFLLRDVKPMFFFGVLSMLLCFI SLVLGIPVIIDFIDTGLVERVPTAILSSSIALIAVMSFFCGLILDNVSRGRREMRILSILRTSDKTLSE >Mature_309_residues MNSIKVAVLLPCFNEAGAIGKTVMSFKQALPDASIYVYDNNSTDNTVNEALQAGVIVRHEPRQGKGEVVRRMFSDIDADI YVMADGDDTYDASICPALIEQLDNEKLDMIIGSRERASMAYPKGHILGNKLFSSLINLAFNAQLSDVFSGYRIMSHRFVK TVPIFSDGFQIETELTVHALHHNMPIKEVSTQYQSRPEGTVSKLNTFSDGLKILNFILFLLRDVKPMFFFGVLSMLLCFI SLVLGIPVIIDFIDTGLVERVPTAILSSSIALIAVMSFFCGLILDNVSRGRREMRILSILRTSDKTLSE
Specific function: Unknown
COG id: COG0463
COG function: function code M; Glycosyltransferases involved in cell wall biogenesis
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 34358; Mature: 34358
Theoretical pI: Translated: 5.96; Mature: 5.96
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 3.9 %Met (Translated Protein) 5.2 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 3.9 %Met (Mature Protein) 5.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNSIKVAVLLPCFNEAGAIGKTVMSFKQALPDASIYVYDNNSTDNTVNEALQAGVIVRHE CCCEEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHCCCEEEEC PRQGKGEVVRRMFSDIDADIYVMADGDDTYDASICPALIEQLDNEKLDMIIGSRERASMA CCCCHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCHHEECCCHHHHCC YPKGHILGNKLFSSLINLAFNAQLSDVFSGYRIMSHRFVKTVPIFSDGFQIETELTVHAL CCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEHHHHHHHH HHNMPIKEVSTQYQSRPEGTVSKLNTFSDGLKILNFILFLLRDVKPMFFFGVLSMLLCFI HCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH SLVLGIPVIIDFIDTGLVERVPTAILSSSIALIAVMSFFCGLILDNVSRGRREMRILSIL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH RTSDKTLSE HHCCHHCCC >Mature Secondary Structure MNSIKVAVLLPCFNEAGAIGKTVMSFKQALPDASIYVYDNNSTDNTVNEALQAGVIVRHE CCCEEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHCCCEEEEC PRQGKGEVVRRMFSDIDADIYVMADGDDTYDASICPALIEQLDNEKLDMIIGSRERASMA CCCCHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCHHEECCCHHHHCC YPKGHILGNKLFSSLINLAFNAQLSDVFSGYRIMSHRFVKTVPIFSDGFQIETELTVHAL CCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEHHHHHHHH HHNMPIKEVSTQYQSRPEGTVSKLNTFSDGLKILNFILFLLRDVKPMFFFGVLSMLLCFI HCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH SLVLGIPVIIDFIDTGLVERVPTAILSSSIALIAVMSFFCGLILDNVSRGRREMRILSIL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH RTSDKTLSE HHCCHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 7507920; 12384590; 12704152 [H]