Definition | Vibrio splendidus LGP32 chromosome 1, complete genome. |
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Accession | NC_011753 |
Length | 3,299,303 |
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The map label for this gene is 218709253
Identifier: 218709253
GI number: 218709253
Start: 1356721
End: 1357851
Strand: Direct
Name: 218709253
Synonym: VS_1260
Alternate gene names: NA
Gene position: 1356721-1357851 (Clockwise)
Preceding gene: 218709250
Following gene: 218709254
Centisome position: 41.12
GC content: 46.15
Gene sequence:
>1131_bases GTGAGCGTTACTCTAAACATGTTTGATCAAATAAAAGACTTCATTAATCCGAGCAAGAATCCTGATCTTACTCAGGCCCA TGAATATCAGCGTAAGCATCTTCCTACATTGTGGCTGTTGGGCAAAACGGGCGCGGGCAAGTCATCGTTTATTCAAGCGG TTACTGGTGACTCTTCTGTTGAAGTCGGCAATGGATTTGCTCCGTGTACCATGACGGCGATGTCATATGAGTTTCCGCAA GACAAACCCGTGATGCGCTTTCTCGATACCAGAGGTCTAAGTGAAGCGAATTATGATGCGAAAGAAGATCTGGAAGAGAT TGGTCAGGCAGGTAATGCGCTCGTTGTGGTGATGAAAGCCGACGAGCCTGAACAATCCGCCGTGCTTACGGCTCTAAAAC AGATTAAGAAACAGAAGAAAATTAAACACTTGCTGCTTGTTCATACCGCTGTGTTGTCTTCCAATGAAGCAGACCGCGCA AGGCAAATTCAATTCAACACCAACCAAGTAGAGAAGGCTTGGGGTAAAGAGTTTGAATCGGTAGCGGTCGATTTCGAAAC GGATGAGTCGAGCAATAACAGTGGTTCAATTTACAACTATGACATCTTGTTAGAAAAGCTGACCAGTATTCTTCCTGTTA TTGGAATGATGGTGCAAGACAAAGAGCACTCCACACAGGAAGAAGCCAACTTTGATCAAGTAGAAAACGAAGTGCTTTGG TATGCGGGAAGTGCGGCAGCGAGCGACCTAATTCCGGGTGTTGGGTTGGTGTCGGTACCTGCGATTCAAGCGAAAATGCT TCATAGCTTGGCGAATCAATATGGGGTCGAGTGGAACAAGAGAGTCTTCAGTGAGTTGATAGGCACTCTGGGAAGCAGCT TTGCGTTGCAATACGGAATGAAGCTGGGCACTCGACAGTTGATAAAGCTGATTCCAGTTTATGGTCAAACGGTAGGGGCG GTGGCTGCAGCGGCAATGAGTTTCGGCACCTCTTATGGTTTAGGTCGCGCGGCTTGTTTTTACTTCTATCATAAGAACAA AGGCGAAGAAGTGTCTGAGCAAGAGATGCAGAAGATCTACAAAGAATCCCTGAAAAAAGGAAAGGCGGTGTCGGGTTATG AAGAAAATTAG
Upstream 100 bases:
>100_bases GGCATTGTAAACCTGTGCGACTGAACAAACATAAGTTTAATATGATTTGTGGTTATATAAGTCAGTATTGCTTTGTCATC AACCCGAATCTCAACATCAA
Downstream 100 bases:
>100_bases AAACCTATTTCGATTACTGGCGGTGTTATCGAGCGGCCGTTGGGGCATTGCCCTGATTTCGGCTATCTTCCCAAGCATTA TCATGATGGGTTTTGGTGTC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 376; Mature: 375
Protein sequence:
>376_residues MSVTLNMFDQIKDFINPSKNPDLTQAHEYQRKHLPTLWLLGKTGAGKSSFIQAVTGDSSVEVGNGFAPCTMTAMSYEFPQ DKPVMRFLDTRGLSEANYDAKEDLEEIGQAGNALVVVMKADEPEQSAVLTALKQIKKQKKIKHLLLVHTAVLSSNEADRA RQIQFNTNQVEKAWGKEFESVAVDFETDESSNNSGSIYNYDILLEKLTSILPVIGMMVQDKEHSTQEEANFDQVENEVLW YAGSAAASDLIPGVGLVSVPAIQAKMLHSLANQYGVEWNKRVFSELIGTLGSSFALQYGMKLGTRQLIKLIPVYGQTVGA VAAAAMSFGTSYGLGRAACFYFYHKNKGEEVSEQEMQKIYKESLKKGKAVSGYEEN
Sequences:
>Translated_376_residues MSVTLNMFDQIKDFINPSKNPDLTQAHEYQRKHLPTLWLLGKTGAGKSSFIQAVTGDSSVEVGNGFAPCTMTAMSYEFPQ DKPVMRFLDTRGLSEANYDAKEDLEEIGQAGNALVVVMKADEPEQSAVLTALKQIKKQKKIKHLLLVHTAVLSSNEADRA RQIQFNTNQVEKAWGKEFESVAVDFETDESSNNSGSIYNYDILLEKLTSILPVIGMMVQDKEHSTQEEANFDQVENEVLW YAGSAAASDLIPGVGLVSVPAIQAKMLHSLANQYGVEWNKRVFSELIGTLGSSFALQYGMKLGTRQLIKLIPVYGQTVGA VAAAAMSFGTSYGLGRAACFYFYHKNKGEEVSEQEMQKIYKESLKKGKAVSGYEEN >Mature_375_residues SVTLNMFDQIKDFINPSKNPDLTQAHEYQRKHLPTLWLLGKTGAGKSSFIQAVTGDSSVEVGNGFAPCTMTAMSYEFPQD KPVMRFLDTRGLSEANYDAKEDLEEIGQAGNALVVVMKADEPEQSAVLTALKQIKKQKKIKHLLLVHTAVLSSNEADRAR QIQFNTNQVEKAWGKEFESVAVDFETDESSNNSGSIYNYDILLEKLTSILPVIGMMVQDKEHSTQEEANFDQVENEVLWY AGSAAASDLIPGVGLVSVPAIQAKMLHSLANQYGVEWNKRVFSELIGTLGSSFALQYGMKLGTRQLIKLIPVYGQTVGAV AAAAMSFGTSYGLGRAACFYFYHKNKGEEVSEQEMQKIYKESLKKGKAVSGYEEN
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 41498; Mature: 41367
Theoretical pI: Translated: 5.30; Mature: 5.30
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 3.2 %Met (Translated Protein) 3.7 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 2.9 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSVTLNMFDQIKDFINPSKNPDLTQAHEYQRKHLPTLWLLGKTGAGKSSFIQAVTGDSSV CCEEHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCEEEEEECCCCCHHHHHEEECCCCCE EVGNGFAPCTMTAMSYEFPQDKPVMRFLDTRGLSEANYDAKEDLEEIGQAGNALVVVMKA ECCCCCCCHHHHHHCCCCCCCCHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCEEEEEEEC DEPEQSAVLTALKQIKKQKKIKHLLLVHTAVLSSNEADRARQIQFNTNQVEKAWGKEFES CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHEEECCHHHHHHHHCCHHHH VAVDFETDESSNNSGSIYNYDILLEKLTSILPVIGMMVQDKEHSTQEEANFDQVENEVLW EEEEEECCCCCCCCCCEEHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHCCHHHHCCCEEE YAGSAAASDLIPGVGLVSVPAIQAKMLHSLANQYGVEWNKRVFSELIGTLGSSFALQYGM EECCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCHHHHHHHHH KLGTRQLIKLIPVYGQTVGAVAAAAMSFGTSYGLGRAACFYFYHKNKGEEVSEQEMQKIY HHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCCCCCHHHEEEEEECCCCCCCCHHHHHHHH KESLKKGKAVSGYEEN HHHHHCCCCCCCCCCC >Mature Secondary Structure SVTLNMFDQIKDFINPSKNPDLTQAHEYQRKHLPTLWLLGKTGAGKSSFIQAVTGDSSV CEEHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCEEEEEECCCCCHHHHHEEECCCCCE EVGNGFAPCTMTAMSYEFPQDKPVMRFLDTRGLSEANYDAKEDLEEIGQAGNALVVVMKA ECCCCCCCHHHHHHCCCCCCCCHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCEEEEEEEC DEPEQSAVLTALKQIKKQKKIKHLLLVHTAVLSSNEADRARQIQFNTNQVEKAWGKEFES CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHEEECCHHHHHHHHCCHHHH VAVDFETDESSNNSGSIYNYDILLEKLTSILPVIGMMVQDKEHSTQEEANFDQVENEVLW EEEEEECCCCCCCCCCEEHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHCCHHHHCCCEEE YAGSAAASDLIPGVGLVSVPAIQAKMLHSLANQYGVEWNKRVFSELIGTLGSSFALQYGM EECCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCHHHHHHHHH KLGTRQLIKLIPVYGQTVGAVAAAAMSFGTSYGLGRAACFYFYHKNKGEEVSEQEMQKIY HHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCCCCCHHHEEEEEECCCCCCCCHHHHHHHH KESLKKGKAVSGYEEN HHHHHCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA