| Definition | Vibrio splendidus LGP32 chromosome 1, complete genome. |
|---|---|
| Accession | NC_011753 |
| Length | 3,299,303 |
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The map label for this gene is 218709245
Identifier: 218709245
GI number: 218709245
Start: 1348238
End: 1350100
Strand: Direct
Name: 218709245
Synonym: VS_1252
Alternate gene names: NA
Gene position: 1348238-1350100 (Clockwise)
Preceding gene: 218709244
Following gene: 218709246
Centisome position: 40.86
GC content: 45.84
Gene sequence:
>1863_bases ATGCCTCAATCTCTTTTGCCAAATATTCTTCAATTTATCGGTCAGATAGATCCTTTCGATAAGATCCCTAAACAAGCACT TCGTGAACTTGCCTCCAATGTTCAGATCACTTATCTCGGCAAGGGGGATGTGGTTGATCTATGTGAGTCGGGTAAAGAAA AGTCGCTTTACATCATCCGAACCGGTTCTATGGAGCAAAGAAAGTCAGACGGTGTACTTCGTGCTCGTTTAGGCAGTGAA GACTTGTTCGGCTTTACGTTCTTAGATTCTGAAGTTAATGACGAGAAAGGCTACAGAGCGATCGCAATCGAAAATAGCTT ACTTTATGTGATTCCACATTCGGCGCTTCAAGCGTTGTTCAAGGCATTCCCAAGCTGCGCAGAACACTTTGCATCACAGG CGCAGGTTCGGTTGAAGTCGGCACTTGATGTTGTGTGGTCAAATAAAGAAAAAGGCTTGTTCATTCGTAAGGTTGAAGAA GTGGCAAGCGGGCAGGTGGCTATCGTTAAGTCTGAACAAACTATTCAGTCGGTCGCGGTTGAAATGCTTCATCAACGCTC GCCATGTGCCGTGATCTATGAGGGTGAAACCATTGTTGGTTTGATTACTGACCGTGACATGACTAAGCGAGTGATCGCCC ACGGTGTCAGCACTGATAGCCTGATCTCCGAGGTGATGACGCATTCTCCAGTGACGGTAAAACCGGATGATCTGGTGCTG CATGCTGCGTCTATCATGATGCAATTCAACATCCGTAACTTGCCCGTTGTGAAAGAGAATAAGGTCGTTGGTCTTCTCAC TACGTCTCACTTAGTTCAAAACCACCGTGTCCAAGCGATCTTCTTAATCGAGAAAATCAAATACGCGGGCAGTGTGAAAA CCATGTCTTCGTTTACCCCAGAGCGACAAGCTATTTTTGAAGCGCTGGTGGAAGGCAAGGTTGCACCGGAAACCGTAGGT AAGGTCATGACCATGATTATGGACGCCTACACACGCCGATTGATTCAGATAGCGATTGATAAGTTAGGCCCACCACCTTG TGATTTTTCTTGGATTGTTGCGGGCTCGCACGCTCGTAATGAAGTTCATATGCTGTCGGATCAAGATAGTGCGATTGTAC TCTCTGACGATGCGACAGACAGTGACCGTATTTACTTCAAACATTTAGCGATGATGGTGACTAACGGATTAGCGAGTTGT GATTATCCATTGTGTCCGGGTAAATTCATGGCTGCGACACCAAAATGGTGTCAGCCACTCAGCGTTTGGAAGCACTACTA CAAGAAGTGGGTGGCTAACCCTGAGTACGAACGCTTACTCAACATCAGTGTGTTCCTAGAAATTCGAACCATCTATGGCA ACAGTGAGTTCGAAGGCATTCTTCGTGATGAGTTGCATTCTAACATTCGCAGCAACCGTGAGTTTTTAAGCACACTAGTG AAAGATGCGGTAAACACCAACCCGCCATTGGGTATTTTCAATAGTTTGGTTCTAGAGAAATCGGGTGAGAACAAGAAAAC ACTCAATGTGAAGAAGTACGCCATTAACTTGATTATTGATCTTGCGCGTATTTACGGATTAGCGGTGGAATGTGATTTGT CAGCAACCGATGAACGTTTCGCAGCTGCCAATGAAAAAGGCATGCTGAGCGACGACGCATTCAAGAACATTCTGGGCTCT TACCAGTTCATTCTCTCTTTCCGATTTGGTCATCAACTTGAAGCGCTGAAGAACGGGGATGTGCCTGACAACAACATCAA CCCAGATAGCTTTGGTAGCTTTGAGCGTAAACACTTGAAAGATGCCTTTAGGATCATTGCTGACCTTCAAGAAGCCGCGA AAATCCGTTTCGGAGCACGCTAA
Upstream 100 bases:
>100_bases TCTAAAACTTGATCAATTCTGCTATTCAACCTAAAAATCAACTCGCAACTCGATATATTAATTATATAATAATACTAATC AAACAAATGCGAGTATGGTT
Downstream 100 bases:
>100_bases TGAAATCGTTTTTAAATTACTTTCATCCTCTTGAGAAAATTAAGCGCACACGAAAGCAATATTTGAATACGGTTAAGCTG CCAGAGGCGTTACATGCTCT
Product: hypothetical protein
Products: NA
Alternate protein names: Signal-Transduction Protein; Nucleotidyltransferase; Signal Transduction Protein With CBS Domains; Signal Transduction Protein; Signal-Transduction Protein With CBS Domains; Nucleotidyltransferase Family; CBS Domain Protein; Signal Protein; Inosine-5-Monophosphate Dehydrogenase; Nucleotidyltransferase Domain Family Protein; DNA Polymerase III Subunit Epsilon; Endonuclease/Nucleotidyltransferase; CBS Signal-Transduction Protein; Cyclic-Nucleotide Signal Transduction Protein; Multidomain-Containing Protein; Cyclic Nucleotide-Regulated Nucleotidyltransferase; Methyl-Accepting Chemotaxis Protein A; Nucleotidyltransferases
Number of amino acids: Translated: 620; Mature: 619
Protein sequence:
>620_residues MPQSLLPNILQFIGQIDPFDKIPKQALRELASNVQITYLGKGDVVDLCESGKEKSLYIIRTGSMEQRKSDGVLRARLGSE DLFGFTFLDSEVNDEKGYRAIAIENSLLYVIPHSALQALFKAFPSCAEHFASQAQVRLKSALDVVWSNKEKGLFIRKVEE VASGQVAIVKSEQTIQSVAVEMLHQRSPCAVIYEGETIVGLITDRDMTKRVIAHGVSTDSLISEVMTHSPVTVKPDDLVL HAASIMMQFNIRNLPVVKENKVVGLLTTSHLVQNHRVQAIFLIEKIKYAGSVKTMSSFTPERQAIFEALVEGKVAPETVG KVMTMIMDAYTRRLIQIAIDKLGPPPCDFSWIVAGSHARNEVHMLSDQDSAIVLSDDATDSDRIYFKHLAMMVTNGLASC DYPLCPGKFMAATPKWCQPLSVWKHYYKKWVANPEYERLLNISVFLEIRTIYGNSEFEGILRDELHSNIRSNREFLSTLV KDAVNTNPPLGIFNSLVLEKSGENKKTLNVKKYAINLIIDLARIYGLAVECDLSATDERFAAANEKGMLSDDAFKNILGS YQFILSFRFGHQLEALKNGDVPDNNINPDSFGSFERKHLKDAFRIIADLQEAAKIRFGAR
Sequences:
>Translated_620_residues MPQSLLPNILQFIGQIDPFDKIPKQALRELASNVQITYLGKGDVVDLCESGKEKSLYIIRTGSMEQRKSDGVLRARLGSE DLFGFTFLDSEVNDEKGYRAIAIENSLLYVIPHSALQALFKAFPSCAEHFASQAQVRLKSALDVVWSNKEKGLFIRKVEE VASGQVAIVKSEQTIQSVAVEMLHQRSPCAVIYEGETIVGLITDRDMTKRVIAHGVSTDSLISEVMTHSPVTVKPDDLVL HAASIMMQFNIRNLPVVKENKVVGLLTTSHLVQNHRVQAIFLIEKIKYAGSVKTMSSFTPERQAIFEALVEGKVAPETVG KVMTMIMDAYTRRLIQIAIDKLGPPPCDFSWIVAGSHARNEVHMLSDQDSAIVLSDDATDSDRIYFKHLAMMVTNGLASC DYPLCPGKFMAATPKWCQPLSVWKHYYKKWVANPEYERLLNISVFLEIRTIYGNSEFEGILRDELHSNIRSNREFLSTLV KDAVNTNPPLGIFNSLVLEKSGENKKTLNVKKYAINLIIDLARIYGLAVECDLSATDERFAAANEKGMLSDDAFKNILGS YQFILSFRFGHQLEALKNGDVPDNNINPDSFGSFERKHLKDAFRIIADLQEAAKIRFGAR >Mature_619_residues PQSLLPNILQFIGQIDPFDKIPKQALRELASNVQITYLGKGDVVDLCESGKEKSLYIIRTGSMEQRKSDGVLRARLGSED LFGFTFLDSEVNDEKGYRAIAIENSLLYVIPHSALQALFKAFPSCAEHFASQAQVRLKSALDVVWSNKEKGLFIRKVEEV ASGQVAIVKSEQTIQSVAVEMLHQRSPCAVIYEGETIVGLITDRDMTKRVIAHGVSTDSLISEVMTHSPVTVKPDDLVLH AASIMMQFNIRNLPVVKENKVVGLLTTSHLVQNHRVQAIFLIEKIKYAGSVKTMSSFTPERQAIFEALVEGKVAPETVGK VMTMIMDAYTRRLIQIAIDKLGPPPCDFSWIVAGSHARNEVHMLSDQDSAIVLSDDATDSDRIYFKHLAMMVTNGLASCD YPLCPGKFMAATPKWCQPLSVWKHYYKKWVANPEYERLLNISVFLEIRTIYGNSEFEGILRDELHSNIRSNREFLSTLVK DAVNTNPPLGIFNSLVLEKSGENKKTLNVKKYAINLIIDLARIYGLAVECDLSATDERFAAANEKGMLSDDAFKNILGSY QFILSFRFGHQLEALKNGDVPDNNINPDSFGSFERKHLKDAFRIIADLQEAAKIRFGAR
Specific function: Unknown
COG id: COG2905
COG function: function code T; Predicted signal-transduction protein containing cAMP-binding and CBS domains
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 69314; Mature: 69182
Theoretical pI: Translated: 6.92; Mature: 6.92
Prosite motif: PS50042 CNMP_BINDING_3
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 3.9 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 3.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPQSLLPNILQFIGQIDPFDKIPKQALRELASNVQITYLGKGDVVDLCESGKEKSLYIIR CCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHCCCCCEEEEEE TGSMEQRKSDGVLRARLGSEDLFGFTFLDSEVNDEKGYRAIAIENSLLYVIPHSALQALF CCCCHHHHCCCEEEEECCCCCCEEEEEECCCCCCCCCEEEEEEECCEEEEECHHHHHHHH KAFPSCAEHFASQAQVRLKSALDVVWSNKEKGLFIRKVEEVASGQVAIVKSEQTIQSVAV HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCEEEEECHHHHHHHHH EMLHQRSPCAVIYEGETIVGLITDRDMTKRVIAHGVSTDSLISEVMTHSPVTVKPDDLVL HHHHCCCCEEEEECCCEEEEEEECCHHHHHHHHCCCCHHHHHHHHHHCCCCEECCCHHHH HAASIMMQFNIRNLPVVKENKVVGLLTTSHLVQNHRVQAIFLIEKIKYAGSVKTMSSFTP HHHHHHHEECCCCCCEEECCCEEEEEEHHHHHHCCCEEEEEEEHHHHHCCCCHHHHHCCC ERQAIFEALVEGKVAPETVGKVMTMIMDAYTRRLIQIAIDKLGPPPCDFSWIVAGSHARN HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCC EVHMLSDQDSAIVLSDDATDSDRIYFKHLAMMVTNGLASCDYPLCPGKFMAATPKWCQPL CEEEECCCCCEEEEECCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHCCHH SVWKHYYKKWVANPEYERLLNISVFLEIRTIYGNSEFEGILRDELHSNIRSNREFLSTLV HHHHHHHHHHCCCCCHHHHEEEEEEEEEEEEECCCHHHHHHHHHHHHHHHCCHHHHHHHH KDAVNTNPPLGIFNSLVLEKSGENKKTLNVKKYAINLIIDLARIYGLAVECDLSATDERF HHHHCCCCCHHHHHHHHHHCCCCCCCEEEHHHHHHHHHHHHHHHHCEEEEECCCCCCHHH AAANEKGMLSDDAFKNILGSYQFILSFRFGHQLEALKNGDVPDNNINPDSFGSFERKHLK HCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHCCCCCCCCCCCCCCCCCHHHHHHH DAFRIIADLQEAAKIRFGAR HHHHHHHHHHHHHHHCCCCC >Mature Secondary Structure PQSLLPNILQFIGQIDPFDKIPKQALRELASNVQITYLGKGDVVDLCESGKEKSLYIIR CHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHCCCCCEEEEEE TGSMEQRKSDGVLRARLGSEDLFGFTFLDSEVNDEKGYRAIAIENSLLYVIPHSALQALF CCCCHHHHCCCEEEEECCCCCCEEEEEECCCCCCCCCEEEEEEECCEEEEECHHHHHHHH KAFPSCAEHFASQAQVRLKSALDVVWSNKEKGLFIRKVEEVASGQVAIVKSEQTIQSVAV HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCEEEEECHHHHHHHHH EMLHQRSPCAVIYEGETIVGLITDRDMTKRVIAHGVSTDSLISEVMTHSPVTVKPDDLVL HHHHCCCCEEEEECCCEEEEEEECCHHHHHHHHCCCCHHHHHHHHHHCCCCEECCCHHHH HAASIMMQFNIRNLPVVKENKVVGLLTTSHLVQNHRVQAIFLIEKIKYAGSVKTMSSFTP HHHHHHHEECCCCCCEEECCCEEEEEEHHHHHHCCCEEEEEEEHHHHHCCCCHHHHHCCC ERQAIFEALVEGKVAPETVGKVMTMIMDAYTRRLIQIAIDKLGPPPCDFSWIVAGSHARN HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCC EVHMLSDQDSAIVLSDDATDSDRIYFKHLAMMVTNGLASCDYPLCPGKFMAATPKWCQPL CEEEECCCCCEEEEECCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHCCHH SVWKHYYKKWVANPEYERLLNISVFLEIRTIYGNSEFEGILRDELHSNIRSNREFLSTLV HHHHHHHHHHCCCCCHHHHEEEEEEEEEEEEECCCHHHHHHHHHHHHHHHCCHHHHHHHH KDAVNTNPPLGIFNSLVLEKSGENKKTLNVKKYAINLIIDLARIYGLAVECDLSATDERF HHHHCCCCCHHHHHHHHHHCCCCCCCEEEHHHHHHHHHHHHHHHHCEEEEECCCCCCHHH AAANEKGMLSDDAFKNILGSYQFILSFRFGHQLEALKNGDVPDNNINPDSFGSFERKHLK HCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHCCCCCCCCCCCCCCCCCHHHHHHH DAFRIIADLQEAAKIRFGAR HHHHHHHHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA