Definition | Vibrio splendidus LGP32 chromosome 1, complete genome. |
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Accession | NC_011753 |
Length | 3,299,303 |
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The map label for this gene is 218709218
Identifier: 218709218
GI number: 218709218
Start: 1301023
End: 1302960
Strand: Direct
Name: 218709218
Synonym: VS_1225
Alternate gene names: NA
Gene position: 1301023-1302960 (Clockwise)
Preceding gene: 218709217
Following gene: 218709221
Centisome position: 39.43
GC content: 35.29
Gene sequence:
>1938_bases ATGCAAATTAAATATATCAGTGTTTATAGTCATGATGGAAAGCGAAACGACGTAAAATTAGAAACAGGTAAATTAAATAT CCTTACCGGTGGCTCTGGTCGTGGTAAGTCCCAGTTGGTGGATATTATTAGTTATTGTTTAGGATCGCGAGAGTGCACTG TTGCTAAAGGAATCATTACGAAATCTGTATCGTGGTATTCAATGGTTCTTGAGTTTAATGATTGCTCAGTATTTATAGCG AGAAAAGCGCCGTTGCTAGGGTTTAGCAGCAGTACTACATGTGACTTAAAAATGAATGTCAATGAACCGTTAGCATATGA AGATTTAGATGAGTCAACTAACATAACTGGCCTGTTAAAATATTTAACTAAAAAAATTGGCATATCAGAATACACTACCG ATGTTCCTAAAGAAAATTCTAGGCCTAATATTACTATTTCAATTAAACATGCTAAAGCATTTATTTTTCAGAGACAAACT GAAATCGCTTCAGATAATGTTCTTTTCCATAGACAGCATGATGGACCAGTAAAGCAAGCAATAAAAGATGTCCTTCCATA TTTTATGGGTGCTTCGAATGAAAGCCGACTTAACGATATTGAAAAGTTGAGAGAACTAAAGCGTAAGCGAGCTAAGTTAC TAAAAGAAATAAAGGAACAAGATCAGATTAAAGGTCAGGGTTTAAGCAAAGGTAGAATGCTTTTAATTGAAGCCATCGCA ACAGGATTAGTTGAAGACGATATTTATGTGTCAGATAAAGAGTTGGTCGAAATTTTAAAAAAACTTGCTGATGTACTTCC AGATAGCCCGAAAACGGAAGTATTTTCACTAGACCCGTTAATTAAATTAGAATTAGACAGAGACCAAATAAGAGACGAGA AAGTTGAAATTAACACTCAACTTCAAAGTATCCTAGAGTACGAACGTAACATAAATTCGATAGATCATGAATATGGTGAA CAACGAGCTAGATTAGAATCCATCAACTTGTTTAGTCGTCTTAATTCCGGTGATGTCAAGTTTTATGACTGTCTTGAGCA TATAAGAAATATAATTGAGAAAAATGCATCTATTTTAAACTTCGAGTTATCAGGGATTGAAAAAGCAAAGCCTAGTTTAT CGGGCGCTATTAAGGAACTAAAGGAAAAAGATGATTTACTGTCAATTAAATTAAAAGAAACTAGATCTGCAATATTTAGT ATTAAGTCAAAAAGAAATAAAGATAATAAGCTAAGAAATCTAGAGCAAAGACAATCTAAGGTAATTGGTAGAATATCATT GTATTTAGAAAGTGTAACGTGGGGGAGTGATACCAGTCCACTAACAAAAAAAATTGAAAAGTTGGAGCCTTTTATAACTG AGCTTGAGCTTAAGCTTGACCCGTCTCGAATAAATAGAATATTAGAATCTCAATTAAGTTGTTTAAGTGAAGATATGACT AAATGGGCGCGAGAATTACGTTTAGAGCATAGTAAGTATCCGATACGTCTAGATCCTAAAGTTTTGACAGTTGCCGCTGA CACTCCAAATGGTAGAACGGAGCTTTATCGTATGGGGAGTGGCGCCAATTGGGTAGGTTATCACTTGGTTACTTTAGTTG CTCTTGCTAAATGGTTTATAGAACATGGTAGGCCTGTACCTAATTTTATATTCTTTGATCAGCCTACTCAAGTGTACTTT CCATCAGACCCCACAGGTGATGGCTCTTTGTCTTCTATAAAAAAGGATGAAGACCGAATTAAGGTGGAAAGGATGTTTAA GTGGTTAGCTAAGATAGCTAAAGAGTTATCACCAAAATTACAAATTATTGTTACAGATCATGCTGATATTTATGAAGATT GGTTTCAAGACTGTACAGTGACTCCTAAGTGGAGAGGGGAGGAGCATGCACTTATCCCTTATAGTTGGATTCCTGAAGGC TATGACAGCGAAGAGTAA
Upstream 100 bases:
>100_bases ATATGAAAACAATACTGAAATCTGCAAAATTTATTGGTAAGTGGTTTTCACTAGTTAACTCAGATGCAACTATTTACGCA AAATTTGGAGTGAAACCATA
Downstream 100 bases:
>100_bases ATATAAAAAGCACTAGCTTCCCTTTTTAAGTCCTCAAATCATCCCGCGCTATTTCGCCCATTCAATGAACTCTTTGTATG GGCGTTTCCCTCTCATACCT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 645; Mature: 645
Protein sequence:
>645_residues MQIKYISVYSHDGKRNDVKLETGKLNILTGGSGRGKSQLVDIISYCLGSRECTVAKGIITKSVSWYSMVLEFNDCSVFIA RKAPLLGFSSSTTCDLKMNVNEPLAYEDLDESTNITGLLKYLTKKIGISEYTTDVPKENSRPNITISIKHAKAFIFQRQT EIASDNVLFHRQHDGPVKQAIKDVLPYFMGASNESRLNDIEKLRELKRKRAKLLKEIKEQDQIKGQGLSKGRMLLIEAIA TGLVEDDIYVSDKELVEILKKLADVLPDSPKTEVFSLDPLIKLELDRDQIRDEKVEINTQLQSILEYERNINSIDHEYGE QRARLESINLFSRLNSGDVKFYDCLEHIRNIIEKNASILNFELSGIEKAKPSLSGAIKELKEKDDLLSIKLKETRSAIFS IKSKRNKDNKLRNLEQRQSKVIGRISLYLESVTWGSDTSPLTKKIEKLEPFITELELKLDPSRINRILESQLSCLSEDMT KWARELRLEHSKYPIRLDPKVLTVAADTPNGRTELYRMGSGANWVGYHLVTLVALAKWFIEHGRPVPNFIFFDQPTQVYF PSDPTGDGSLSSIKKDEDRIKVERMFKWLAKIAKELSPKLQIIVTDHADIYEDWFQDCTVTPKWRGEEHALIPYSWIPEG YDSEE
Sequences:
>Translated_645_residues MQIKYISVYSHDGKRNDVKLETGKLNILTGGSGRGKSQLVDIISYCLGSRECTVAKGIITKSVSWYSMVLEFNDCSVFIA RKAPLLGFSSSTTCDLKMNVNEPLAYEDLDESTNITGLLKYLTKKIGISEYTTDVPKENSRPNITISIKHAKAFIFQRQT EIASDNVLFHRQHDGPVKQAIKDVLPYFMGASNESRLNDIEKLRELKRKRAKLLKEIKEQDQIKGQGLSKGRMLLIEAIA TGLVEDDIYVSDKELVEILKKLADVLPDSPKTEVFSLDPLIKLELDRDQIRDEKVEINTQLQSILEYERNINSIDHEYGE QRARLESINLFSRLNSGDVKFYDCLEHIRNIIEKNASILNFELSGIEKAKPSLSGAIKELKEKDDLLSIKLKETRSAIFS IKSKRNKDNKLRNLEQRQSKVIGRISLYLESVTWGSDTSPLTKKIEKLEPFITELELKLDPSRINRILESQLSCLSEDMT KWARELRLEHSKYPIRLDPKVLTVAADTPNGRTELYRMGSGANWVGYHLVTLVALAKWFIEHGRPVPNFIFFDQPTQVYF PSDPTGDGSLSSIKKDEDRIKVERMFKWLAKIAKELSPKLQIIVTDHADIYEDWFQDCTVTPKWRGEEHALIPYSWIPEG YDSEE >Mature_645_residues MQIKYISVYSHDGKRNDVKLETGKLNILTGGSGRGKSQLVDIISYCLGSRECTVAKGIITKSVSWYSMVLEFNDCSVFIA RKAPLLGFSSSTTCDLKMNVNEPLAYEDLDESTNITGLLKYLTKKIGISEYTTDVPKENSRPNITISIKHAKAFIFQRQT EIASDNVLFHRQHDGPVKQAIKDVLPYFMGASNESRLNDIEKLRELKRKRAKLLKEIKEQDQIKGQGLSKGRMLLIEAIA TGLVEDDIYVSDKELVEILKKLADVLPDSPKTEVFSLDPLIKLELDRDQIRDEKVEINTQLQSILEYERNINSIDHEYGE QRARLESINLFSRLNSGDVKFYDCLEHIRNIIEKNASILNFELSGIEKAKPSLSGAIKELKEKDDLLSIKLKETRSAIFS IKSKRNKDNKLRNLEQRQSKVIGRISLYLESVTWGSDTSPLTKKIEKLEPFITELELKLDPSRINRILESQLSCLSEDMT KWARELRLEHSKYPIRLDPKVLTVAADTPNGRTELYRMGSGANWVGYHLVTLVALAKWFIEHGRPVPNFIFFDQPTQVYF PSDPTGDGSLSSIKKDEDRIKVERMFKWLAKIAKELSPKLQIIVTDHADIYEDWFQDCTVTPKWRGEEHALIPYSWIPEG YDSEE
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 73771; Mature: 73771
Theoretical pI: Translated: 7.09; Mature: 7.09
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MQIKYISVYSHDGKRNDVKLETGKLNILTGGSGRGKSQLVDIISYCLGSRECTVAKGIIT CEEEEEEEEECCCCCCCEEEEECEEEEEECCCCCCHHHHHHHHHHHHCCCCCCHHHHHHH KSVSWYSMVLEFNDCSVFIARKAPLLGFSSSTTCDLKMNVNEPLAYEDLDESTNITGLLK HCCCEEEEEEEECCCEEEEEECCCEEECCCCCEEEEEECCCCCCCCCCCCCCCCHHHHHH YLTKKIGISEYTTDVPKENSRPNITISIKHAKAFIFQRQTEIASDNVLFHRQHDGPVKQA HHHHHCCCCHHCCCCCCCCCCCCEEEEEEHHHHHHHHHHHHHCCCCEEEEECCCCHHHHH IKDVLPYFMGASNESRLNDIEKLRELKRKRAKLLKEIKEQDQIKGQGLSKGRMLLIEAIA HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHH TGLVEDDIYVSDKELVEILKKLADVLPDSPKTEVFSLDPLIKLELDRDQIRDEKVEINTQ HHCCCCCCEECHHHHHHHHHHHHHHCCCCCCCCEEECCCEEEEECCHHHHCCHHHHHHHH LQSILEYERNINSIDHEYGEQRARLESINLFSRLNSGDVKFYDCLEHIRNIIEKNASILN HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCEEE FELSGIEKAKPSLSGAIKELKEKDDLLSIKLKETRSAIFSIKSKRNKDNKLRNLEQRQSK EEECCCCCCCCHHHHHHHHHHCCCCEEEEEEHHHHHHHHHHHHHCCCCHHHHHHHHHHHH VIGRISLYLESVTWGSDTSPLTKKIEKLEPFITELELKLDPSRINRILESQLSCLSEDMT HHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHEEEECHHHHHHHHHHHHHHHHHHHH KWARELRLEHSKYPIRLDPKVLTVAADTPNGRTELYRMGSGANWVGYHLVTLVALAKWFI HHHHHHHHCCCCCCEEECCEEEEEEECCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHH EHGRPVPNFIFFDQPTQVYFPSDPTGDGSLSSIKKDEDRIKVERMFKWLAKIAKELSPKL HCCCCCCCEEEECCCCEEECCCCCCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCE QIIVTDHADIYEDWFQDCTVTPKWRGEEHALIPYSWIPEGYDSEE EEEEECCHHHHHHHHHCCCCCCCCCCCCCEECCHHCCCCCCCCCC >Mature Secondary Structure MQIKYISVYSHDGKRNDVKLETGKLNILTGGSGRGKSQLVDIISYCLGSRECTVAKGIIT CEEEEEEEEECCCCCCCEEEEECEEEEEECCCCCCHHHHHHHHHHHHCCCCCCHHHHHHH KSVSWYSMVLEFNDCSVFIARKAPLLGFSSSTTCDLKMNVNEPLAYEDLDESTNITGLLK HCCCEEEEEEEECCCEEEEEECCCEEECCCCCEEEEEECCCCCCCCCCCCCCCCHHHHHH YLTKKIGISEYTTDVPKENSRPNITISIKHAKAFIFQRQTEIASDNVLFHRQHDGPVKQA HHHHHCCCCHHCCCCCCCCCCCCEEEEEEHHHHHHHHHHHHHCCCCEEEEECCCCHHHHH IKDVLPYFMGASNESRLNDIEKLRELKRKRAKLLKEIKEQDQIKGQGLSKGRMLLIEAIA HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHH TGLVEDDIYVSDKELVEILKKLADVLPDSPKTEVFSLDPLIKLELDRDQIRDEKVEINTQ HHCCCCCCEECHHHHHHHHHHHHHHCCCCCCCCEEECCCEEEEECCHHHHCCHHHHHHHH LQSILEYERNINSIDHEYGEQRARLESINLFSRLNSGDVKFYDCLEHIRNIIEKNASILN HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCEEE FELSGIEKAKPSLSGAIKELKEKDDLLSIKLKETRSAIFSIKSKRNKDNKLRNLEQRQSK EEECCCCCCCCHHHHHHHHHHCCCCEEEEEEHHHHHHHHHHHHHCCCCHHHHHHHHHHHH VIGRISLYLESVTWGSDTSPLTKKIEKLEPFITELELKLDPSRINRILESQLSCLSEDMT HHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHEEEECHHHHHHHHHHHHHHHHHHHH KWARELRLEHSKYPIRLDPKVLTVAADTPNGRTELYRMGSGANWVGYHLVTLVALAKWFI HHHHHHHHCCCCCCEEECCEEEEEEECCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHH EHGRPVPNFIFFDQPTQVYFPSDPTGDGSLSSIKKDEDRIKVERMFKWLAKIAKELSPKL HCCCCCCCEEEECCCCEEECCCCCCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCE QIIVTDHADIYEDWFQDCTVTPKWRGEEHALIPYSWIPEGYDSEE EEEEECCHHHHHHHHHCCCCCCCCCCCCCEECCHHCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA