| Definition | Vibrio splendidus LGP32 chromosome 1, complete genome. |
|---|---|
| Accession | NC_011753 |
| Length | 3,299,303 |
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The map label for this gene is 218709151
Identifier: 218709151
GI number: 218709151
Start: 1230784
End: 1232049
Strand: Direct
Name: 218709151
Synonym: VS_1158
Alternate gene names: NA
Gene position: 1230784-1232049 (Clockwise)
Preceding gene: 218709150
Following gene: 218709152
Centisome position: 37.3
GC content: 43.76
Gene sequence:
>1266_bases ATGACTAACTCCTCTTTTCGCTTATTGCCGTTAGCGGTAGCACTTGCGACTTCATTCGCTGCACACGCTACAGATGAGCA AAAATTGGCTGAGCTTGAAAACAAGGTCGCTATTCTTGAAGCAAAAGAACTAAATTCAGTCGCTGATAAGTTTAACTTCA ACGGTTTTGCGTCTTTGAACATGCAACTTGGCAACCATAGCCATGGTTTCATGAAGTCAGAAAACAAAGTACGCTTTGAA GAAGGTTCTCTAATTGGTTTGCAGGGTGAGTTTGAAGTTAACGAATCTACTTCAGCTGTAGTGCAAATGGTTGCTCGAGG CACTAAGAAAGAAAACTGGACACCGGATGTTGAGTGGGCATTTCTAAGCCATAAAGTAACACCAAACCTGACACTTCGTG GCGGTAAGCTGCGTCTTCCTCTTTTCATGTACTCTGACTACCTAGAGGTGGGTTACGCTCAAACAAGCGTTCGCGTACCT AGCGAAGTATACGGCCCAGTCGTTCTTACATCACTGACTGGTGGGGATTTCATTTACGATATTGAGTTGGAAGATAGCAC AGCATCATTCCAAGGGTTTGTAGGAGCACAAAAGCTTTCAGCTTCTAAGCATACCTATAGTGCCGATACTCAGTTCGATG ATATCGTTGGTGGGGTGATCAACTGGACCGACGACACTTGGACATTACGTGCGGTTTACGCTCAAGCAACAGTTAGCTCA AGCACTAATTGGATCTTAGATAATGACCCACTAAATCCGGGGAATTCGTATGAAATGCAGAATACTAAATTCAATGATGA AAAAGCGAAATTTTACGGTATTGGTGGTCGATACGACAACGGTAACCTAGCGCTTGTTTCAGAAGTGACTCGCACTACAG TAGAAGGTTTTTACCAAGATGTAGATGCAGCTTACCTGACAGTATCTTACCGTGTGAACGAATTCACACCTTACGTGACT GCTGCGCATATGGAGACAACAGACGATGCTGAGCGCAATGGCCAAGTGAAAAGTACAGGTATGAAAGCGCTATTAGGCAC CGGAAGCCCGAATGATTACAAGTCAGCAAAATACGTTGCAAGTGGCTTAAATGTTCAACGCACAACTTACAGCATCGGTA CTCGTTGGGACTTTATGCCTAATATCGCGCTGAAAGGTGATGTTAGCTACCTAACCAACTTCGGTTCAACTAATGGTGGT GTTAACGCATCTTACAAGAACGAAGACAACATCTTGTACACAGTTAAAGTTGACGCGGTATTTTAA
Upstream 100 bases:
>100_bases GTCGACAGATCAACTCGAAGCTCTAAGTCACCAACTGAGTGGCATCGTTACAGAGCTGAGTAAATCAACATCACAATTTA AAGTATAACGGAGAACAACA
Downstream 100 bases:
>100_bases GGAAGAGAATTATGTTTAAAAAAGCACTGGTAGCCGCTGCTCTTCTTAGCAGCATGAACGCTTTCGCTGGTTTGGTTGTT GTTGGCAACCCATCAATGAA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 421; Mature: 420
Protein sequence:
>421_residues MTNSSFRLLPLAVALATSFAAHATDEQKLAELENKVAILEAKELNSVADKFNFNGFASLNMQLGNHSHGFMKSENKVRFE EGSLIGLQGEFEVNESTSAVVQMVARGTKKENWTPDVEWAFLSHKVTPNLTLRGGKLRLPLFMYSDYLEVGYAQTSVRVP SEVYGPVVLTSLTGGDFIYDIELEDSTASFQGFVGAQKLSASKHTYSADTQFDDIVGGVINWTDDTWTLRAVYAQATVSS STNWILDNDPLNPGNSYEMQNTKFNDEKAKFYGIGGRYDNGNLALVSEVTRTTVEGFYQDVDAAYLTVSYRVNEFTPYVT AAHMETTDDAERNGQVKSTGMKALLGTGSPNDYKSAKYVASGLNVQRTTYSIGTRWDFMPNIALKGDVSYLTNFGSTNGG VNASYKNEDNILYTVKVDAVF
Sequences:
>Translated_421_residues MTNSSFRLLPLAVALATSFAAHATDEQKLAELENKVAILEAKELNSVADKFNFNGFASLNMQLGNHSHGFMKSENKVRFE EGSLIGLQGEFEVNESTSAVVQMVARGTKKENWTPDVEWAFLSHKVTPNLTLRGGKLRLPLFMYSDYLEVGYAQTSVRVP SEVYGPVVLTSLTGGDFIYDIELEDSTASFQGFVGAQKLSASKHTYSADTQFDDIVGGVINWTDDTWTLRAVYAQATVSS STNWILDNDPLNPGNSYEMQNTKFNDEKAKFYGIGGRYDNGNLALVSEVTRTTVEGFYQDVDAAYLTVSYRVNEFTPYVT AAHMETTDDAERNGQVKSTGMKALLGTGSPNDYKSAKYVASGLNVQRTTYSIGTRWDFMPNIALKGDVSYLTNFGSTNGG VNASYKNEDNILYTVKVDAVF >Mature_420_residues TNSSFRLLPLAVALATSFAAHATDEQKLAELENKVAILEAKELNSVADKFNFNGFASLNMQLGNHSHGFMKSENKVRFEE GSLIGLQGEFEVNESTSAVVQMVARGTKKENWTPDVEWAFLSHKVTPNLTLRGGKLRLPLFMYSDYLEVGYAQTSVRVPS EVYGPVVLTSLTGGDFIYDIELEDSTASFQGFVGAQKLSASKHTYSADTQFDDIVGGVINWTDDTWTLRAVYAQATVSSS TNWILDNDPLNPGNSYEMQNTKFNDEKAKFYGIGGRYDNGNLALVSEVTRTTVEGFYQDVDAAYLTVSYRVNEFTPYVTA AHMETTDDAERNGQVKSTGMKALLGTGSPNDYKSAKYVASGLNVQRTTYSIGTRWDFMPNIALKGDVSYLTNFGSTNGGV NASYKNEDNILYTVKVDAVF
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 46351; Mature: 46220
Theoretical pI: Translated: 4.67; Mature: 4.67
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 2.1 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 1.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTNSSFRLLPLAVALATSFAAHATDEQKLAELENKVAILEAKELNSVADKFNFNGFASLN CCCCCEEHHHHHHHHHHHHHHCCCCHHHHHHHHCCEEEEEHHHHHHHHHHCCCCCEEEEE MQLGNHSHGFMKSENKVRFEEGSLIGLQGEFEVNESTSAVVQMVARGTKKENWTPDVEWA EEECCCCCCCCCCCCCEEEECCCEEEEECCEEECCHHHHHHHHHHCCCCCCCCCCCCEEE FLSHKVTPNLTLRGGKLRLPLFMYSDYLEVGYAQTSVRVPSEVYGPVVLTSLTGGDFIYD EEEEECCCCEEEECCEEEEEHEEEHHHHHHCCCEEEEECCHHHCCCEEEEEECCCCEEEE IELEDSTASFQGFVGAQKLSASKHTYSADTQFDDIVGGVINWTDDTWTLRAVYAQATVSS EEECCCCCCHHHCCCHHHHCCCCCCCCCCCCHHHHHCCEEECCCCCEEEEEEEEEEEECC STNWILDNDPLNPGNSYEMQNTKFNDEKAKFYGIGGRYDNGNLALVSEVTRTTVEGFYQD CCCEEEECCCCCCCCCEEECCCCCCCCCEEEEECCCEECCCCEEEEHHHHHHHHHHHHHC VDAAYLTVSYRVNEFTPYVTAAHMETTDDAERNGQVKSTGMKALLGTGSPNDYKSAKYVA CCEEEEEEEEEECCCCCEEEEEEECCCCCHHHCCEEECCCCEEEEECCCCCCCCCHHHHH SGLNVQRTTYSIGTRWDFMPNIALKGDVSYLTNFGSTNGGVNASYKNEDNILYTVKVDAV CCCCEEEEEEEECCEECCCCCEEEECCHHHHHCCCCCCCCCCCEECCCCCEEEEEEEEEE F C >Mature Secondary Structure TNSSFRLLPLAVALATSFAAHATDEQKLAELENKVAILEAKELNSVADKFNFNGFASLN CCCCEEHHHHHHHHHHHHHHCCCCHHHHHHHHCCEEEEEHHHHHHHHHHCCCCCEEEEE MQLGNHSHGFMKSENKVRFEEGSLIGLQGEFEVNESTSAVVQMVARGTKKENWTPDVEWA EEECCCCCCCCCCCCCEEEECCCEEEEECCEEECCHHHHHHHHHHCCCCCCCCCCCCEEE FLSHKVTPNLTLRGGKLRLPLFMYSDYLEVGYAQTSVRVPSEVYGPVVLTSLTGGDFIYD EEEEECCCCEEEECCEEEEEHEEEHHHHHHCCCEEEEECCHHHCCCEEEEEECCCCEEEE IELEDSTASFQGFVGAQKLSASKHTYSADTQFDDIVGGVINWTDDTWTLRAVYAQATVSS EEECCCCCCHHHCCCHHHHCCCCCCCCCCCCHHHHHCCEEECCCCCEEEEEEEEEEEECC STNWILDNDPLNPGNSYEMQNTKFNDEKAKFYGIGGRYDNGNLALVSEVTRTTVEGFYQD CCCEEEECCCCCCCCCEEECCCCCCCCCEEEEECCCEECCCCEEEEHHHHHHHHHHHHHC VDAAYLTVSYRVNEFTPYVTAAHMETTDDAERNGQVKSTGMKALLGTGSPNDYKSAKYVA CCEEEEEEEEEECCCCCEEEEEEECCCCCHHHCCEEECCCCEEEEECCCCCCCCCHHHHH SGLNVQRTTYSIGTRWDFMPNIALKGDVSYLTNFGSTNGGVNASYKNEDNILYTVKVDAV CCCCEEEEEEEECCEECCCCCEEEECCHHHHHCCCCCCCCCCCEECCCCCEEEEEEEEEE F C
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA