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The map label for this gene is cph2 [H]

Identifier: 218709149

GI number: 218709149

Start: 1227843

End: 1229048

Strand: Direct

Name: cph2 [H]

Synonym: VS_1156

Alternate gene names: 218709149

Gene position: 1227843-1229048 (Clockwise)

Preceding gene: 218709148

Following gene: 218709150

Centisome position: 37.22

GC content: 40.8

Gene sequence:

>1206_bases
ATGAACCAGCATGTTGTAGTGATAGAAGATCACCCTTTTCAATTGAATGTAATGGGGATGGTTTTAAAAAGTTTGGGTAT
GGAAAATGTCCAACCTTTTGAATGTGGATATAAGGCTCTAGAGTTTATTGAAGCCTCTTCTGTCGATTTGATCTTATGTG
ATCTGAATATGCCGATGATCGATGGTATCGAACTCCTAAAACGCCTTGCTGAGGCCGATTTTCAAGGCAATATCATCATC
ACAAGTGCGGAAAGCAAAACAGTGCTCGATGCCGCAAGGAAGATGTGTAAAGCGTTTAACCTGAATTTGCTTGGTGTTCT
TGAGAAGCCAATAGCAAAAGAGTCGCTGTCAAAGTTAATTAACCTTAACTCTACAAAAGAAGCGGCTGCTTCTAATTCTA
ATAGCGACATCGTTATTACGGATGAAGACATAGCAAAAGCGGTAAGCAACCAAGAGTTTATGTTCTATTACCAACCGATA
GTGTGTATCCATAGTGGTGAATGGCGAGAAAGTGAATCGCTAATTCGATGGCAGCACCCTCGTTATGGCGTACTCAGCCC
TTTTTTCTTTTTGTCTCGGTTACTTGAGTCAGGAAAAATGGGAGAGGTGATGAAGTATTTAATCAATCAAGCGATCAATG
AGAAGTCATTTCTCGGAGAGCGGAGATTTGCAATAAACCTGACAGCTAAAGATATTATTGACGGTGATATTGTTGATTAT
ATCTTCGCTTTGATCGACCAAGGTGAACTTGAGACAGAGCAGATAAAATTGGAATTAACAGAATCTGATTTAGTTGAAAG
TGTCGCTCTTGCTTTAGCGTCCACCACGAGGATATGCATGCGTGGTATTCCCCTGGCGATTGACGACTTTGGAACAGGTT
ACTCTTCACTCAAGCAATTAGATGACCTGCCATTTTCAGCACTGAAACTGGATATCGACTTTGTGAAAAACATTCAGAGC
AGTCGTTCAAGCCATGCCATTGTTCGCGCTACTCTCTACTTGGCTCACTTATTAGAACTGAGTACGGTTGCTGAAGGGGT
TGAGGATCATTCTCTTTGGATGGACATTCGTGAAATCAGTAATGTCGACACATTGGTTCAGGGCTATTTTATCGCTCGTC
CAATGCCTGCTCGTAAACTATTAGAGTGGAAAGAAGACTGGGACAGCAAAATTAAAGAGCTGAACTTAATTAAAGAAATT
AAATAA

Upstream 100 bases:

>100_bases
ACTTAGATGGTATTCAAGCACATTACGATAACCTCGAACAGCTGACGAACCAATTGAAGACTTATTGTTCAGAATCAATC
AAACCATTTAAGGAGCTACC

Downstream 100 bases:

>100_bases
GCGGGCTTTGAACATAACGGTAAATTTGTTTAGTGAATGTGTTCGCTATTAAATATGAACAAACGTTACCATCAGCCACA
ACCAGCGCTAATGAAAAAAC

Product: hypothetical protein

Products: NA

Alternate protein names: Bacteriophytochrome cph2 [H]

Number of amino acids: Translated: 401; Mature: 401

Protein sequence:

>401_residues
MNQHVVVIEDHPFQLNVMGMVLKSLGMENVQPFECGYKALEFIEASSVDLILCDLNMPMIDGIELLKRLAEADFQGNIII
TSAESKTVLDAARKMCKAFNLNLLGVLEKPIAKESLSKLINLNSTKEAAASNSNSDIVITDEDIAKAVSNQEFMFYYQPI
VCIHSGEWRESESLIRWQHPRYGVLSPFFFLSRLLESGKMGEVMKYLINQAINEKSFLGERRFAINLTAKDIIDGDIVDY
IFALIDQGELETEQIKLELTESDLVESVALALASTTRICMRGIPLAIDDFGTGYSSLKQLDDLPFSALKLDIDFVKNIQS
SRSSHAIVRATLYLAHLLELSTVAEGVEDHSLWMDIREISNVDTLVQGYFIARPMPARKLLEWKEDWDSKIKELNLIKEI
K

Sequences:

>Translated_401_residues
MNQHVVVIEDHPFQLNVMGMVLKSLGMENVQPFECGYKALEFIEASSVDLILCDLNMPMIDGIELLKRLAEADFQGNIII
TSAESKTVLDAARKMCKAFNLNLLGVLEKPIAKESLSKLINLNSTKEAAASNSNSDIVITDEDIAKAVSNQEFMFYYQPI
VCIHSGEWRESESLIRWQHPRYGVLSPFFFLSRLLESGKMGEVMKYLINQAINEKSFLGERRFAINLTAKDIIDGDIVDY
IFALIDQGELETEQIKLELTESDLVESVALALASTTRICMRGIPLAIDDFGTGYSSLKQLDDLPFSALKLDIDFVKNIQS
SRSSHAIVRATLYLAHLLELSTVAEGVEDHSLWMDIREISNVDTLVQGYFIARPMPARKLLEWKEDWDSKIKELNLIKEI
K
>Mature_401_residues
MNQHVVVIEDHPFQLNVMGMVLKSLGMENVQPFECGYKALEFIEASSVDLILCDLNMPMIDGIELLKRLAEADFQGNIII
TSAESKTVLDAARKMCKAFNLNLLGVLEKPIAKESLSKLINLNSTKEAAASNSNSDIVITDEDIAKAVSNQEFMFYYQPI
VCIHSGEWRESESLIRWQHPRYGVLSPFFFLSRLLESGKMGEVMKYLINQAINEKSFLGERRFAINLTAKDIIDGDIVDY
IFALIDQGELETEQIKLELTESDLVESVALALASTTRICMRGIPLAIDDFGTGYSSLKQLDDLPFSALKLDIDFVKNIQS
SRSSHAIVRATLYLAHLLELSTVAEGVEDHSLWMDIREISNVDTLVQGYFIARPMPARKLLEWKEDWDSKIKELNLIKEI
K

Specific function: Photoreceptor which exists in two forms that are reversibly interconvertible by light:the R form that absorbs maximally in the red region of the spectrum and the FR form that absorbs maximally in the far-red region [H]

COG id: COG2200

COG function: function code T; FOG: EAL domain

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 GGDEF domains [H]

Homologues:

Organism=Escherichia coli, GI1787541, Length=247, Percent_Identity=34.8178137651822, Blast_Score=139, Evalue=2e-34,
Organism=Escherichia coli, GI1790496, Length=258, Percent_Identity=29.4573643410853, Blast_Score=115, Evalue=4e-27,
Organism=Escherichia coli, GI87081921, Length=248, Percent_Identity=28.2258064516129, Blast_Score=112, Evalue=4e-26,
Organism=Escherichia coli, GI87081845, Length=240, Percent_Identity=30.4166666666667, Blast_Score=106, Evalue=3e-24,
Organism=Escherichia coli, GI1786507, Length=271, Percent_Identity=30.6273062730627, Blast_Score=105, Evalue=7e-24,
Organism=Escherichia coli, GI1788502, Length=251, Percent_Identity=31.0756972111554, Blast_Score=99, Evalue=6e-22,
Organism=Escherichia coli, GI226510982, Length=245, Percent_Identity=28.5714285714286, Blast_Score=94, Evalue=1e-20,
Organism=Escherichia coli, GI87081980, Length=250, Percent_Identity=27.6, Blast_Score=91, Evalue=1e-19,
Organism=Escherichia coli, GI87081743, Length=248, Percent_Identity=28.6290322580645, Blast_Score=89, Evalue=6e-19,
Organism=Escherichia coli, GI1788849, Length=247, Percent_Identity=28.3400809716599, Blast_Score=88, Evalue=8e-19,
Organism=Escherichia coli, GI1787055, Length=241, Percent_Identity=25.3112033195021, Blast_Score=83, Evalue=4e-17,
Organism=Escherichia coli, GI87082096, Length=284, Percent_Identity=25.3521126760563, Blast_Score=78, Evalue=1e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR003018
- InterPro:   IPR016132
- InterPro:   IPR001294
- InterPro:   IPR013515 [H]

Pfam domain/function: PF00563 EAL; PF01590 GAF; PF00990 GGDEF; PF00360 Phytochrome [H]

EC number: NA

Molecular weight: Translated: 45220; Mature: 45220

Theoretical pI: Translated: 4.58; Mature: 4.58

Prosite motif: PS50110 RESPONSE_REGULATORY ; PS50883 EAL

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNQHVVVIEDHPFQLNVMGMVLKSLGMENVQPFECGYKALEFIEASSVDLILCDLNMPMI
CCCCEEEEECCCCEEHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCHH
DGIELLKRLAEADFQGNIIITSAESKTVLDAARKMCKAFNLNLLGVLEKPIAKESLSKLI
HHHHHHHHHHHCCCCCCEEEECCCCHHHHHHHHHHHHHHCCCHHHHHHCHHHHHHHHHHH
NLNSTKEAAASNSNSDIVITDEDIAKAVSNQEFMFYYQPIVCIHSGEWRESESLIRWQHP
CCCCCHHHHCCCCCCEEEEECHHHHHHHCCCCEEEEECCEEEEECCCCCCCCCHHEECCC
RYGVLSPFFFLSRLLESGKMGEVMKYLINQAINEKSFLGERRFAINLTAKDIIDGDIVDY
CCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHCCHHHHCCCCEEEEEECHHHHCCHHHHHH
IFALIDQGELETEQIKLELTESDLVESVALALASTTRICMRGIPLAIDDFGTGYSSLKQL
HHHHHCCCCCCCEEEEEEECHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHH
DDLPFSALKLDIDFVKNIQSSRSSHAIVRATLYLAHLLELSTVAEGVEDHSLWMDIREIS
HCCCHHHHEEEHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHC
NVDTLVQGYFIARPMPARKLLEWKEDWDSKIKELNLIKEIK
CHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MNQHVVVIEDHPFQLNVMGMVLKSLGMENVQPFECGYKALEFIEASSVDLILCDLNMPMI
CCCCEEEEECCCCEEHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCHH
DGIELLKRLAEADFQGNIIITSAESKTVLDAARKMCKAFNLNLLGVLEKPIAKESLSKLI
HHHHHHHHHHHCCCCCCEEEECCCCHHHHHHHHHHHHHHCCCHHHHHHCHHHHHHHHHHH
NLNSTKEAAASNSNSDIVITDEDIAKAVSNQEFMFYYQPIVCIHSGEWRESESLIRWQHP
CCCCCHHHHCCCCCCEEEEECHHHHHHHCCCCEEEEECCEEEEECCCCCCCCCHHEECCC
RYGVLSPFFFLSRLLESGKMGEVMKYLINQAINEKSFLGERRFAINLTAKDIIDGDIVDY
CCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHCCHHHHCCCCEEEEEECHHHHCCHHHHHH
IFALIDQGELETEQIKLELTESDLVESVALALASTTRICMRGIPLAIDDFGTGYSSLKQL
HHHHHCCCCCCCEEEEEEECHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHH
DDLPFSALKLDIDFVKNIQSSRSSHAIVRATLYLAHLLELSTVAEGVEDHSLWMDIREIS
HCCCHHHHEEEHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHC
NVDTLVQGYFIARPMPARKLLEWKEDWDSKIKELNLIKEIK
CHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231; 10978170; 11063585 [H]