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The map label for this gene is viuB [H]

Identifier: 218709116

GI number: 218709116

Start: 1187198

End: 1188013

Strand: Direct

Name: viuB [H]

Synonym: VS_1122

Alternate gene names: 218709116

Gene position: 1187198-1188013 (Clockwise)

Preceding gene: 218709115

Following gene: 218709117

Centisome position: 35.98

GC content: 45.22

Gene sequence:

>816_bases
ATGAGCGATCAACCAGTGCGTTTACATCCGATGTTGTTGGACTTTGTTCGTAAGGAGAAGATCTCAAAGCATCTACTGCG
AGTAACTGTTACGGGCGACTCTTTAAAAGGGTTCCCTGAAGATCAAAATGGTACACACATAAAAGTGTTTTTCCCCAATA
GAGCTAGTGGGATATTGCAGTTACCTTACCGAGAAGGTGAAACTGTGATTTGGCCTGAGCATAAACCCGTGCCCCGAGCC
TATACCGTAAGAAAGTATCGAGCTGATGTGAATGAGCTTGATATCGATTTCGTGATCCACGGAACCGATTCTCCCGGCGG
CGGGTGGGCAATTAAAGCAGAACAAGGTTTCCAAATTGGCCTTGTAGGTCCTGCTGGGCCTGACCCATTACTTGAACCCG
CAGATTGGCATATTATTGCGGGAGACTTAACAGCAGTACCAGCCATTAGTGCGATTTTGGAGAGCCTTCCCTCTGACACT
CAAGGCTATGTATTTATCGAGATAGAGGATGCCGCAGATAAGCATGATATTCAGCATCCGCAAGGTCTGGTTCTGAAGTG
GCTAATTAGAGACGAAAATAGCGATCAATCTCTATTGAGCGAAGCTATTTCCGGCTTAATTGCACCGAATGGATCTCACT
CGCTTTCGGCTTTCATTGCGGGTGAAAATGAAAGCGTGATTGCGTGTCGTAAAGCGCTTAAACAAGAGTACAAGCTGTCT
AAAAAAGATATGTATGCGATTCCTTACTGGAAACGAGGTAAGGATGAAGAAGCGTACCATGATGAACGTCATGAAGTTAT
GGATGAAGAGTACTAA

Upstream 100 bases:

>100_bases
TGGCGAAGACCCTATGAGTAAAACTCTGAACATTAGGAGAGGCTCCCACCAAAGTCATGCTTTCCCCTCAATACTGTAGA
TCTCTTTAAGAGGAAAATTG

Downstream 100 bases:

>100_bases
TCAGCTTTATTGAAGTTATTCGATAGATGTTTCAGCCATGATTTTTCTGATTTAGTAATCACCACAGCAAGTCCATCTTA
ATAATTAAACTCAGACTAAA

Product: vibriobactin utilization protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 271; Mature: 270

Protein sequence:

>271_residues
MSDQPVRLHPMLLDFVRKEKISKHLLRVTVTGDSLKGFPEDQNGTHIKVFFPNRASGILQLPYREGETVIWPEHKPVPRA
YTVRKYRADVNELDIDFVIHGTDSPGGGWAIKAEQGFQIGLVGPAGPDPLLEPADWHIIAGDLTAVPAISAILESLPSDT
QGYVFIEIEDAADKHDIQHPQGLVLKWLIRDENSDQSLLSEAISGLIAPNGSHSLSAFIAGENESVIACRKALKQEYKLS
KKDMYAIPYWKRGKDEEAYHDERHEVMDEEY

Sequences:

>Translated_271_residues
MSDQPVRLHPMLLDFVRKEKISKHLLRVTVTGDSLKGFPEDQNGTHIKVFFPNRASGILQLPYREGETVIWPEHKPVPRA
YTVRKYRADVNELDIDFVIHGTDSPGGGWAIKAEQGFQIGLVGPAGPDPLLEPADWHIIAGDLTAVPAISAILESLPSDT
QGYVFIEIEDAADKHDIQHPQGLVLKWLIRDENSDQSLLSEAISGLIAPNGSHSLSAFIAGENESVIACRKALKQEYKLS
KKDMYAIPYWKRGKDEEAYHDERHEVMDEEY
>Mature_270_residues
SDQPVRLHPMLLDFVRKEKISKHLLRVTVTGDSLKGFPEDQNGTHIKVFFPNRASGILQLPYREGETVIWPEHKPVPRAY
TVRKYRADVNELDIDFVIHGTDSPGGGWAIKAEQGFQIGLVGPAGPDPLLEPADWHIIAGDLTAVPAISAILESLPSDTQ
GYVFIEIEDAADKHDIQHPQGLVLKWLIRDENSDQSLLSEAISGLIAPNGSHSLSAFIAGENESVIACRKALKQEYKLSK
KDMYAIPYWKRGKDEEAYHDERHEVMDEEY

Specific function: Involved in intracellular removal of iron from iron- vibriobactin complex. Vibriobactin is an iron-chelating compound involved in the transport of iron from the bacterial environment into the cell cytoplasm [H]

COG id: COG2375

COG function: function code P; Siderophore-interacting protein

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To E.coli yqjH [H]

Homologues:

Organism=Escherichia coli, GI1789450, Length=242, Percent_Identity=27.2727272727273, Blast_Score=79, Evalue=4e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013113
- InterPro:   IPR017927
- InterPro:   IPR017938
- InterPro:   IPR007037 [H]

Pfam domain/function: PF08021 FAD_binding_9; PF04954 SIP [H]

EC number: NA

Molecular weight: Translated: 30358; Mature: 30226

Theoretical pI: Translated: 5.08; Mature: 5.08

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSDQPVRLHPMLLDFVRKEKISKHLLRVTVTGDSLKGFPEDQNGTHIKVFFPNRASGILQ
CCCCCEEEHHHHHHHHHHHHHHHEEEEEEEECCCCCCCCCCCCCCEEEEEECCCCCCEEE
LPYREGETVIWPEHKPVPRAYTVRKYRADVNELDIDFVIHGTDSPGGGWAIKAEQGFQIG
ECCCCCCEEECCCCCCCCCHHHHHHHHCCCCCEEEEEEEECCCCCCCCEEEEECCCCEEE
LVGPAGPDPLLEPADWHIIAGDLTAVPAISAILESLPSDTQGYVFIEIEDAADKHDIQHP
EECCCCCCCCCCCCCCEEEECCHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCCCC
QGLVLKWLIRDENSDQSLLSEAISGLIAPNGSHSLSAFIAGENESVIACRKALKQEYKLS
CCEEEEEEEECCCCCHHHHHHHHHHEECCCCCCCEEEEEECCCCCHHHHHHHHHHHHCCC
KKDMYAIPYWKRGKDEEAYHDERHEVMDEEY
CCCEEECCCCCCCCCCCHHHHHHHHHCCCCC
>Mature Secondary Structure 
SDQPVRLHPMLLDFVRKEKISKHLLRVTVTGDSLKGFPEDQNGTHIKVFFPNRASGILQ
CCCCEEEHHHHHHHHHHHHHHHEEEEEEEECCCCCCCCCCCCCCEEEEEECCCCCCEEE
LPYREGETVIWPEHKPVPRAYTVRKYRADVNELDIDFVIHGTDSPGGGWAIKAEQGFQIG
ECCCCCCEEECCCCCCCCCHHHHHHHHCCCCCEEEEEEEECCCCCCCCEEEEECCCCEEE
LVGPAGPDPLLEPADWHIIAGDLTAVPAISAILESLPSDTQGYVFIEIEDAADKHDIQHP
EECCCCCCCCCCCCCCEEEECCHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCCCC
QGLVLKWLIRDENSDQSLLSEAISGLIAPNGSHSLSAFIAGENESVIACRKALKQEYKLS
CCEEEEEEEECCCCCHHHHHHHHHHEECCCCCCCEEEEEECCCCCHHHHHHHHHHHHCCC
KKDMYAIPYWKRGKDEEAYHDERHEVMDEEY
CCCEEECCCCCCCCCCCHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8083157 [H]