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The map label for this gene is rutD [H]

Identifier: 218709078

GI number: 218709078

Start: 1143328

End: 1144125

Strand: Direct

Name: rutD [H]

Synonym: VS_1084

Alternate gene names: 218709078

Gene position: 1143328-1144125 (Clockwise)

Preceding gene: 218709077

Following gene: 218709085

Centisome position: 34.65

GC content: 41.98

Gene sequence:

>798_bases
ATGTCTGAGAGTTTATTATTTCATAAAACATTTACTCACCCTACGAGTGATGAGTGGGTTGTGTTTGTGCATGGCGCAGG
GGGCAGTTCCTCCATTTGGTTTAAGCAGATCAAAGCGTATAAACAGCATTTCAACTTGCTTCTCATTGACTTGAGAGGGC
ACGGTAAATCAGACAACATACTTAAAGATCTGATTTCGAACCGTTATACGTTCAAATCAGTAACGCTCGATATTCTTAAA
GTGTTAGATCATCTAAAAATCCGATCCGCACACTTTGTGGGTATGTCTTTGGGTACAATTATCGTTCGTAACGTGGCCGA
ACTGGCGGCAAGCAGAGTACGTTCGATGGTGCTTGGTGGTGCTGTCACTAAACTCAACACTCGATCTCAAGTCTTAATCA
AATTAGGAAACCTGAGTAAGCACATCATTCCTTATATGTGGCTATACAGCCTTTTTGCTTATGTTGTGATGCCGCAAAAA
AGTCAGAAAGAATCACGTCACCTGTTTATCCGCGAAGCGAAAAAGCTGTGCCAAAAAGAGTTCAAGCGCTGGTTTATCCT
CACGGCTGATGTGAACCCATTGATGAAATACTTTAAAGACAGGGAGTTGCCGATTCCGACTTTGTATTTGATGGGCGAGC
GCGATTACATGTTCATCAAACCCGTTAAAGAAATGGTCGAAGCGCACGAGTCGAGCGAGTTGGTAGAAATTGCCAACTGT
GGGCATGTATGTAATGTAGAAAACCCTGAAGAATTCAATCAACAATCAATCGCTTTTATCCAAAAACAAATTCAGTGA

Upstream 100 bases:

>100_bases
AATTCTTAATTGCGTGATATCCTTAGTCATCGCCTTGTGATGAGGCTTAGCTCCATAAATAAATAAATAAATAAATAAAT
AAATAAATTAAGCGATAGGT

Downstream 100 bases:

>100_bases
TTATCTAGGTTGGTTATCAGGCTAGATGATCCAATAGAATTAAAATAAAACGGGAAGCTAATTTAGCTTCCCGTTTTTAT
TTGGAGGAGGTATTTGATCG

Product: beta-ketoadipate enol-lactone hydrolase

Products: NA

Alternate protein names: Aminohydrolase [H]

Number of amino acids: Translated: 265; Mature: 264

Protein sequence:

>265_residues
MSESLLFHKTFTHPTSDEWVVFVHGAGGSSSIWFKQIKAYKQHFNLLLIDLRGHGKSDNILKDLISNRYTFKSVTLDILK
VLDHLKIRSAHFVGMSLGTIIVRNVAELAASRVRSMVLGGAVTKLNTRSQVLIKLGNLSKHIIPYMWLYSLFAYVVMPQK
SQKESRHLFIREAKKLCQKEFKRWFILTADVNPLMKYFKDRELPIPTLYLMGERDYMFIKPVKEMVEAHESSELVEIANC
GHVCNVENPEEFNQQSIAFIQKQIQ

Sequences:

>Translated_265_residues
MSESLLFHKTFTHPTSDEWVVFVHGAGGSSSIWFKQIKAYKQHFNLLLIDLRGHGKSDNILKDLISNRYTFKSVTLDILK
VLDHLKIRSAHFVGMSLGTIIVRNVAELAASRVRSMVLGGAVTKLNTRSQVLIKLGNLSKHIIPYMWLYSLFAYVVMPQK
SQKESRHLFIREAKKLCQKEFKRWFILTADVNPLMKYFKDRELPIPTLYLMGERDYMFIKPVKEMVEAHESSELVEIANC
GHVCNVENPEEFNQQSIAFIQKQIQ
>Mature_264_residues
SESLLFHKTFTHPTSDEWVVFVHGAGGSSSIWFKQIKAYKQHFNLLLIDLRGHGKSDNILKDLISNRYTFKSVTLDILKV
LDHLKIRSAHFVGMSLGTIIVRNVAELAASRVRSMVLGGAVTKLNTRSQVLIKLGNLSKHIIPYMWLYSLFAYVVMPQKS
QKESRHLFIREAKKLCQKEFKRWFILTADVNPLMKYFKDRELPIPTLYLMGERDYMFIKPVKEMVEAHESSELVEIANCG
HVCNVENPEEFNQQSIAFIQKQIQ

Specific function: May increase the rate of spontaneous hydrolysis of aminoacrylate to malonic semialdehyde. Required to remove a toxic intermediate produce in the pyrimidine nitrogen degradation [H]

COG id: COG0596

COG function: function code R; Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the AB hydrolase superfamily. Hydrolase RutD family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000073
- InterPro:   IPR019913 [H]

Pfam domain/function: PF00561 Abhydrolase_1 [H]

EC number: NA

Molecular weight: Translated: 30616; Mature: 30485

Theoretical pI: Translated: 9.95; Mature: 9.95

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSESLLFHKTFTHPTSDEWVVFVHGAGGSSSIWFKQIKAYKQHFNLLLIDLRGHGKSDNI
CCCCEEEEEECCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCEEEEEECCCCCCCHH
LKDLISNRYTFKSVTLDILKVLDHLKIRSAHFVGMSLGTIIVRNVAELAASRVRSMVLGG
HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
AVTKLNTRSQVLIKLGNLSKHIIPYMWLYSLFAYVVMPQKSQKESRHLFIREAKKLCQKE
HHHCCCCCHHEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHH
FKRWFILTADVNPLMKYFKDRELPIPTLYLMGERDYMFIKPVKEMVEAHESSELVEIANC
HHHEEEEEECHHHHHHHHCCCCCCCCEEEEECCCCEEEHHHHHHHHHHHCCCCHHHHHCC
GHVCNVENPEEFNQQSIAFIQKQIQ
CCCCCCCCHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
SESLLFHKTFTHPTSDEWVVFVHGAGGSSSIWFKQIKAYKQHFNLLLIDLRGHGKSDNI
CCCEEEEEECCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCEEEEEECCCCCCCHH
LKDLISNRYTFKSVTLDILKVLDHLKIRSAHFVGMSLGTIIVRNVAELAASRVRSMVLGG
HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
AVTKLNTRSQVLIKLGNLSKHIIPYMWLYSLFAYVVMPQKSQKESRHLFIREAKKLCQKE
HHHCCCCCHHEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHH
FKRWFILTADVNPLMKYFKDRELPIPTLYLMGERDYMFIKPVKEMVEAHESSELVEIANC
HHHEEEEEECHHHHHHHHCCCCCCCCEEEEECCCCEEEHHHHHHHHHHHCCCCHHHHHCC
GHVCNVENPEEFNQQSIAFIQKQIQ
CCCCCCCCHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA