Definition | Vibrio splendidus LGP32 chromosome 1, complete genome. |
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Accession | NC_011753 |
Length | 3,299,303 |
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The map label for this gene is gltX [H]
Identifier: 218708771
GI number: 218708771
Start: 792752
End: 794179
Strand: Direct
Name: gltX [H]
Synonym: VS_0769
Alternate gene names: 218708771
Gene position: 792752-794179 (Clockwise)
Preceding gene: 218708768
Following gene: 218708789
Centisome position: 24.03
GC content: 45.87
Gene sequence:
>1428_bases ATGACGGTTAAAACTCGTTTTGCTCCTAGCCCAACTGGCTATCTTCACGTTGGTGGTGCACGTACTGCACTTTACTCTTG GCTATTCGCTAAGAATCAAGGTGGTGAATTCGTTCTGCGTATCGAAGACACGGACCTTGAGCGTAACTCTCAAGAAGCGG TTGATGCAATTCTAGAAGGCATGCAATGGATGGGTATGGAATGGGATGAAGGTCCTTACTACCAATCTAAGCGTTTTGAC CGTTACAACGAAATGGTTGATAAGCTACTTGCTGAAGACAAAGCTTTCAAATGCTATGCGTCTAAAGAGCTGCTTGACGA AATTCGTGCAGAGCAAGAAGAAAACAAAGAGATGGCTCGTTACGATGCGAACCACCCTAAAATTGTTGCAGCAAACGAAG CAGCAAAAGAAGGTGATGCGTGCGTTATCCGTTTCCGTAACCCTAAAGAAGGCAGCGTAGTCTTTGATGACCAAATTCGT GGTCGCATTGAAATTTCTAACAGCCAACTTGATGACCTAATCATTCGTCGTACAGACGGTGCACCAACATACAACTTCGT TGTTGTAGTGGATGACTGGGACATGGGTATTACACACGTTGTACGTGGTGAAGACCACATCAACAACACACCTCGTCAAA TCAACATCTATGAAGCACTAGGCGCGCCAGTTCCAACTTTCGCTCACTGTGCAATGATTCTTGGTGATGACGGTGCGAAA CTTTCTAAGCGTCACGGTGCTGTTTCTGTAATGCAATACCGCGACGAAGGTTACCTACCAAATGCACTAAACAACTACCT AGTTCGTTTAGGTTGGTCTCACGGTGACCAAGAGATCTTCTCTCAAGAAGAGATGATTGAATTCTTCAGCCTGAACGCTA TCAGCAAGTCTGCTTCTGCATTCAACACTGATAAGCTACTTTGGTTGAACAACCACTACATCAAGACTTCTGAGCCTGAG TACGTTGCTAAATACCTGCAATGGCACCTAGATGCACAAAAGATCGATACAACAAATGGCCCGGCTATCACTGAAGTGAT CACGCTAGTTGGCGAGCGTTGTAATACGCTTATCGAACTTGCTGAACAGTCTCGTTACTTCTACGAAGATTTCTCTGAGT TTGAAGCTGGTGCAGCGAAGAAGCACCTACGTGGTGTTGCTAAAGGACCACTAGAGCTTGCTCTTGCTAAGGTTGAAGCG CTTGAGGATTTCACTACTGCAAACATCAAAGATGGTGTGATTGCAGCAGTATGTGAAGAGCTAGAGGTAGGCATGGGTAA AATCGGTATGCCACTTCGCGTAGCAGTAACAGGTGGCGGCCAGTCTCCTTCTGTTGATGCAGTGATGGAGCTTGTTGGTA AAGAGCGCGTAATCGCTCGCATCAAGATGGCTCTTGAGTTCATCGCTGAGCGTGAAGCTAATGCTTAA
Upstream 100 bases:
>100_bases GTGGTGATAAAATAGCGCCCAAAATTTAGTGATATTTTTCTGTTGCAGGCTTTGTAATGGCAATCACTAAAAGAATCACC TACATAATCAAGGTATTTAA
Downstream 100 bases:
>100_bases TTGAGCTTTTGCTAGATTCAAAAAAGGGTCAGTAACTTGGTTACTGACCCTTTTTATTTGTCTCGAGTTTTAGCTAATAA ATAGGCTTAAATCTTTTTGA
Product: glutamyl-tRNA synthetase
Products: NA
Alternate protein names: Glutamate--tRNA ligase; GluRS [H]
Number of amino acids: Translated: 475; Mature: 474
Protein sequence:
>475_residues MTVKTRFAPSPTGYLHVGGARTALYSWLFAKNQGGEFVLRIEDTDLERNSQEAVDAILEGMQWMGMEWDEGPYYQSKRFD RYNEMVDKLLAEDKAFKCYASKELLDEIRAEQEENKEMARYDANHPKIVAANEAAKEGDACVIRFRNPKEGSVVFDDQIR GRIEISNSQLDDLIIRRTDGAPTYNFVVVVDDWDMGITHVVRGEDHINNTPRQINIYEALGAPVPTFAHCAMILGDDGAK LSKRHGAVSVMQYRDEGYLPNALNNYLVRLGWSHGDQEIFSQEEMIEFFSLNAISKSASAFNTDKLLWLNNHYIKTSEPE YVAKYLQWHLDAQKIDTTNGPAITEVITLVGERCNTLIELAEQSRYFYEDFSEFEAGAAKKHLRGVAKGPLELALAKVEA LEDFTTANIKDGVIAAVCEELEVGMGKIGMPLRVAVTGGGQSPSVDAVMELVGKERVIARIKMALEFIAEREANA
Sequences:
>Translated_475_residues MTVKTRFAPSPTGYLHVGGARTALYSWLFAKNQGGEFVLRIEDTDLERNSQEAVDAILEGMQWMGMEWDEGPYYQSKRFD RYNEMVDKLLAEDKAFKCYASKELLDEIRAEQEENKEMARYDANHPKIVAANEAAKEGDACVIRFRNPKEGSVVFDDQIR GRIEISNSQLDDLIIRRTDGAPTYNFVVVVDDWDMGITHVVRGEDHINNTPRQINIYEALGAPVPTFAHCAMILGDDGAK LSKRHGAVSVMQYRDEGYLPNALNNYLVRLGWSHGDQEIFSQEEMIEFFSLNAISKSASAFNTDKLLWLNNHYIKTSEPE YVAKYLQWHLDAQKIDTTNGPAITEVITLVGERCNTLIELAEQSRYFYEDFSEFEAGAAKKHLRGVAKGPLELALAKVEA LEDFTTANIKDGVIAAVCEELEVGMGKIGMPLRVAVTGGGQSPSVDAVMELVGKERVIARIKMALEFIAEREANA >Mature_474_residues TVKTRFAPSPTGYLHVGGARTALYSWLFAKNQGGEFVLRIEDTDLERNSQEAVDAILEGMQWMGMEWDEGPYYQSKRFDR YNEMVDKLLAEDKAFKCYASKELLDEIRAEQEENKEMARYDANHPKIVAANEAAKEGDACVIRFRNPKEGSVVFDDQIRG RIEISNSQLDDLIIRRTDGAPTYNFVVVVDDWDMGITHVVRGEDHINNTPRQINIYEALGAPVPTFAHCAMILGDDGAKL SKRHGAVSVMQYRDEGYLPNALNNYLVRLGWSHGDQEIFSQEEMIEFFSLNAISKSASAFNTDKLLWLNNHYIKTSEPEY VAKYLQWHLDAQKIDTTNGPAITEVITLVGERCNTLIELAEQSRYFYEDFSEFEAGAAKKHLRGVAKGPLELALAKVEAL EDFTTANIKDGVIAAVCEELEVGMGKIGMPLRVAVTGGGQSPSVDAVMELVGKERVIARIKMALEFIAEREANA
Specific function: Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction:glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu) [H]
COG id: COG0008
COG function: function code J; Glutamyl- and glutaminyl-tRNA synthetases
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the class-I aminoacyl-tRNA synthetase family [H]
Homologues:
Organism=Homo sapiens, GI134288884, Length=492, Percent_Identity=30.6910569105691, Blast_Score=210, Evalue=3e-54, Organism=Homo sapiens, GI62241042, Length=335, Percent_Identity=24.7761194029851, Blast_Score=78, Evalue=2e-14, Organism=Escherichia coli, GI1788743, Length=472, Percent_Identity=67.7966101694915, Blast_Score=691, Evalue=0.0, Organism=Escherichia coli, GI226510925, Length=247, Percent_Identity=35.6275303643725, Blast_Score=134, Evalue=1e-32, Organism=Escherichia coli, GI1786895, Length=204, Percent_Identity=26.4705882352941, Blast_Score=71, Evalue=1e-13, Organism=Caenorhabditis elegans, GI71993394, Length=489, Percent_Identity=29.038854805726, Blast_Score=203, Evalue=1e-52, Organism=Caenorhabditis elegans, GI17511007, Length=329, Percent_Identity=25.2279635258359, Blast_Score=65, Evalue=9e-11, Organism=Saccharomyces cerevisiae, GI6324540, Length=494, Percent_Identity=30.7692307692308, Blast_Score=241, Evalue=3e-64, Organism=Saccharomyces cerevisiae, GI6321192, Length=215, Percent_Identity=28.8372093023256, Blast_Score=79, Evalue=1e-15, Organism=Saccharomyces cerevisiae, GI6324742, Length=214, Percent_Identity=26.1682242990654, Blast_Score=71, Evalue=4e-13, Organism=Drosophila melanogaster, GI24665321, Length=495, Percent_Identity=30.9090909090909, Blast_Score=231, Evalue=9e-61,
Paralogues:
None
Copy number: 1,800 Molecules/Cell In: Glucose minimal media [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR008925 - InterPro: IPR020751 - InterPro: IPR001412 - InterPro: IPR004527 - InterPro: IPR000924 - InterPro: IPR020061 - InterPro: IPR020058 - InterPro: IPR014729 [H]
Pfam domain/function: PF00749 tRNA-synt_1c [H]
EC number: =6.1.1.17 [H]
Molecular weight: Translated: 53271; Mature: 53140
Theoretical pI: Translated: 4.67; Mature: 4.67
Prosite motif: PS00178 AA_TRNA_LIGASE_I
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 2.9 %Met (Translated Protein) 4.0 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 2.7 %Met (Mature Protein) 3.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTVKTRFAPSPTGYLHVGGARTALYSWLFAKNQGGEFVLRIEDTDLERNSQEAVDAILEG CCCCCCCCCCCCCEEEECCHHHHHHHHHHEECCCCEEEEEEECCCCCCCHHHHHHHHHHH MQWMGMEWDEGPYYQSKRFDRYNEMVDKLLAEDKAFKCYASKELLDEIRAEQEENKEMAR HHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHHHHCHHHHH YDANHPKIVAANEAAKEGDACVIRFRNPKEGSVVFDDQIRGRIEISNSQLDDLIIRRTDG HCCCCCEEEECCCCCCCCCEEEEEECCCCCCCEEECCCCCCEEEECCCCCCCEEEEECCC APTYNFVVVVDDWDMGITHVVRGEDHINNTPRQINIYEALGAPVPTFAHCAMILGDDGAK CCCEEEEEEEECCCCCCEEEECCCHHCCCCCCEEEEHHHHCCCCCHHHHEEEEECCCCCH LSKRHGAVSVMQYRDEGYLPNALNNYLVRLGWSHGDQEIFSQEEMIEFFSLNAISKSASA HHHHCCCEEEEEECCCCCCCHHHHHHEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCC FNTDKLLWLNNHYIKTSEPEYVAKYLQWHLDAQKIDTTNGPAITEVITLVGERCNTLIEL CCCCEEEEEECCEECCCCHHHHHHHHHHHCCHHHCCCCCCCHHHHHHHHHHHHHHHHHHH AEQSRYFYEDFSEFEAGAAKKHLRGVAKGPLELALAKVEALEDFTTANIKDGVIAAVCEE HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHH LEVGMGKIGMPLRVAVTGGGQSPSVDAVMELVGKERVIARIKMALEFIAEREANA HHCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC >Mature Secondary Structure TVKTRFAPSPTGYLHVGGARTALYSWLFAKNQGGEFVLRIEDTDLERNSQEAVDAILEG CCCCCCCCCCCCEEEECCHHHHHHHHHHEECCCCEEEEEEECCCCCCCHHHHHHHHHHH MQWMGMEWDEGPYYQSKRFDRYNEMVDKLLAEDKAFKCYASKELLDEIRAEQEENKEMAR HHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHHHHCHHHHH YDANHPKIVAANEAAKEGDACVIRFRNPKEGSVVFDDQIRGRIEISNSQLDDLIIRRTDG HCCCCCEEEECCCCCCCCCEEEEEECCCCCCCEEECCCCCCEEEECCCCCCCEEEEECCC APTYNFVVVVDDWDMGITHVVRGEDHINNTPRQINIYEALGAPVPTFAHCAMILGDDGAK CCCEEEEEEEECCCCCCEEEECCCHHCCCCCCEEEEHHHHCCCCCHHHHEEEEECCCCCH LSKRHGAVSVMQYRDEGYLPNALNNYLVRLGWSHGDQEIFSQEEMIEFFSLNAISKSASA HHHHCCCEEEEEECCCCCCCHHHHHHEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCC FNTDKLLWLNNHYIKTSEPEYVAKYLQWHLDAQKIDTTNGPAITEVITLVGERCNTLIEL CCCCEEEEEECCEECCCCHHHHHHHHHHHCCHHHCCCCCCCHHHHHHHHHHHHHHHHHHH AEQSRYFYEDFSEFEAGAAKKHLRGVAKGPLELALAKVEALEDFTTANIKDGVIAAVCEE HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHH LEVGMGKIGMPLRVAVTGGGQSPSVDAVMELVGKERVIARIKMALEFIAEREANA HHCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA